data_3AEB
#
_model_server_result.job_id            FSDVUBPlpfqE5bEapQHDfA 
_model_server_result.datetime_utc      '2024-11-05 04:49:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3aeb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":700}' 
#
_entry.id    3AEB 
#
_exptl.entry_id    3AEB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3AEB 
_cell.length_a            71.708 
_cell.length_b            84.255 
_cell.length_c            294.707 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3AEB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? 
metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 I FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc6 B SG CYS 161 B CYS 161 1_555 I FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc7 B SG CYS 164 B CYS 164 1_555 I FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc8 B SG CYS 168 B CYS 168 1_555 H FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? 
metalc ? metalc9 B SG CYS 215 B CYS 215 1_555 H FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc10 B SG CYS 221 B CYS 221 1_555 H FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc11 B SG CYS 225 B CYS 225 1_555 I FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc12 C NE2 HIS 98 C HIS 101 1_555 J FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc13 J FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 250 n n 
PA O2A FAD sing 251 n n 
PA O5B FAD sing 252 n n 
PA O3P FAD sing 253 n n 
O2A HOA2 FAD sing 254 n n 
O5B C5B FAD sing 255 n n 
C5B C4B FAD sing 256 n n 
C5B H51A FAD sing 257 n n 
C5B H52A FAD sing 258 n n 
C4B O4B FAD sing 259 n n 
C4B C3B FAD sing 260 n n 
C4B H4B FAD sing 261 n n 
O4B C1B FAD sing 262 n n 
C3B O3B FAD sing 263 n n 
C3B C2B FAD sing 264 n n 
C3B H3B FAD sing 265 n n 
O3B HO3A FAD sing 266 n n 
C2B O2B FAD sing 267 n n 
C2B C1B FAD sing 268 n n 
C2B H2B FAD sing 269 n n 
O2B HO2A FAD sing 270 n n 
C1B N9A FAD sing 271 n n 
C1B H1B FAD sing 272 n n 
N9A C8A FAD sing 273 n y 
N9A C4A FAD sing 274 n y 
C8A N7A FAD doub 275 n y 
C8A H8A FAD sing 276 n n 
N7A C5A FAD sing 277 n y 
C5A C6A FAD sing 278 n y 
C5A C4A FAD doub 279 n y 
C6A N6A FAD sing 280 n n 
C6A N1A FAD doub 281 n y 
N6A H61A FAD sing 282 n n 
N6A H62A FAD sing 283 n n 
N1A C2A FAD sing 284 n y 
C2A N3A FAD doub 285 n y 
C2A H2A FAD sing 286 n n 
N3A C4A FAD sing 287 n y 
N1 C2 FAD sing 288 n n 
N1 C10 FAD doub 289 n n 
C2 O2 FAD doub 290 n n 
C2 N3 FAD sing 291 n n 
N3 C4 FAD sing 292 n n 
N3 HN3 FAD sing 293 n n 
C4 O4 FAD doub 294 n n 
C4 C4X FAD sing 295 n n 
C4X N5 FAD doub 296 n n 
C4X C10 FAD sing 297 n n 
N5 C5X FAD sing 298 n n 
C5X C6 FAD doub 299 n y 
C5X C9A FAD sing 300 n y 
C6 C7 FAD sing 301 n y 
C6 H6 FAD sing 302 n n 
C7 C7M FAD sing 303 n n 
C7 C8 FAD doub 304 n y 
C7M HM71 FAD sing 305 n n 
C7M HM72 FAD sing 306 n n 
C7M HM73 FAD sing 307 n n 
C8 C8M FAD sing 308 n n 
C8 C9 FAD sing 309 n y 
C8M HM81 FAD sing 310 n n 
C8M HM82 FAD sing 311 n n 
C8M HM83 FAD sing 312 n n 
C9 C9A FAD doub 313 n y 
C9 H9 FAD sing 314 n n 
C9A N10 FAD sing 315 n n 
N10 C10 FAD sing 316 n n 
N10 C1' FAD sing 317 n n 
C1' C2' FAD sing 318 n n 
C1' "H1'1" FAD sing 319 n n 
C1' "H1'2" FAD sing 320 n n 
C2' O2' FAD sing 321 n n 
C2' C3' FAD sing 322 n n 
C2' H2' FAD sing 323 n n 
O2' HO2' FAD sing 324 n n 
C3' O3' FAD sing 325 n n 
C3' C4' FAD sing 326 n n 
C3' H3' FAD sing 327 n n 
O3' HO3' FAD sing 328 n n 
C4' O4' FAD sing 329 n n 
C4' C5' FAD sing 330 n n 
C4' H4' FAD sing 331 n n 
O4' HO4' FAD sing 332 n n 
C5' O5' FAD sing 333 n n 
C5' "H5'1" FAD sing 334 n n 
C5' "H5'2" FAD sing 335 n n 
O5' P FAD sing 336 n n 
P O1P FAD doub 337 n n 
P O2P FAD sing 338 n n 
P O3P FAD sing 339 n n 
O2P HOP2 FAD sing 340 n n 
#
_atom_sites.entry_id                     3AEB 
_atom_sites.fract_transf_matrix[1][1]    0.013945 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011869 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003393 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 FAD A 1 700 700 FAD FAD . 
F 6 MLI A 1 701 701 MLI MLI . 
G 7 FES B 1 302 302 FES FES . 
H 8 F3S B 1 304 304 F3S F3S . 
I 9 SF4 B 1 303 303 SF4 SF4 . 
J 10 HEM C 1 1305 1305 HEM HEM . 
K 11 F7A C 1 1201 1201 F7A F7A . 
L 12 EPH D 1 1306 1306 EPH EPH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . E 5 -12.601 -16.231 22.507 1 50.74 ? PA FAD 700 A 1 
HETATM 2 O O1A FAD . . . E 5 -13.741 -15.591 23.253 1 50.67 ? O1A FAD 700 A 1 
HETATM 3 O O2A FAD . . . E 5 -11.635 -15.186 22.004 1 51.5 ? O2A FAD 700 A 1 
HETATM 4 O O5B FAD . . . E 5 -11.854 -17.266 23.475 1 51.26 ? O5B FAD 700 A 1 
HETATM 5 C C5B FAD . . . E 5 -10.732 -17.969 22.989 1 51.7 ? C5B FAD 700 A 1 
HETATM 6 C C4B FAD . . . E 5 -10.823 -19.443 23.365 1 51.91 ? C4B FAD 700 A 1 
HETATM 7 O O4B FAD . . . E 5 -9.729 -20.14 22.801 1 52.23 ? O4B FAD 700 A 1 
HETATM 8 C C3B FAD . . . E 5 -10.743 -19.64 24.869 1 52.2 ? C3B FAD 700 A 1 
HETATM 9 O O3B FAD . . . E 5 -11.688 -20.618 25.229 1 52.36 ? O3B FAD 700 A 1 
HETATM 10 C C2B FAD . . . E 5 -9.339 -20.142 25.124 1 52.06 ? C2B FAD 700 A 1 
HETATM 11 O O2B FAD . . . E 5 -9.301 -21.08 26.172 1 52.16 ? O2B FAD 700 A 1 
HETATM 12 C C1B FAD . . . E 5 -8.972 -20.795 23.804 1 52.08 ? C1B FAD 700 A 1 
HETATM 13 N N9A FAD . . . E 5 -7.521 -20.711 23.55 1 51.75 ? N9A FAD 700 A 1 
HETATM 14 C C8A FAD . . . E 5 -6.794 -19.602 23.199 1 51.72 ? C8A FAD 700 A 1 
HETATM 15 N N7A FAD . . . E 5 -5.499 -19.968 23.063 1 51.65 ? N7A FAD 700 A 1 
HETATM 16 C C5A FAD . . . E 5 -5.389 -21.29 23.321 1 51.52 ? C5A FAD 700 A 1 
HETATM 17 C C6A FAD . . . E 5 -4.304 -22.165 23.332 1 51.58 ? C6A FAD 700 A 1 
HETATM 18 N N6A FAD . . . E 5 -3.092 -21.675 23.569 1 51.71 ? N6A FAD 700 A 1 
HETATM 19 N N1A FAD . . . E 5 -4.522 -23.495 23.638 1 51.56 ? N1A FAD 700 A 1 
HETATM 20 C C2A FAD . . . E 5 -5.789 -23.954 23.94 1 51.44 ? C2A FAD 700 A 1 
HETATM 21 N N3A FAD . . . E 5 -6.852 -23.074 23.932 1 51.37 ? N3A FAD 700 A 1 
HETATM 22 C C4A FAD . . . E 5 -6.656 -21.767 23.629 1 51.45 ? C4A FAD 700 A 1 
HETATM 23 N N1 FAD . . . E 5 -18.859 -8.997 19.677 1 55.66 ? N1 FAD 700 A 1 
HETATM 24 C C2 FAD . . . E 5 -20.211 -8.892 19.41 1 55.75 ? C2 FAD 700 A 1 
HETATM 25 O O2 FAD . . . E 5 -20.65 -9.311 18.336 1 55.57 ? O2 FAD 700 A 1 
HETATM 26 N N3 FAD . . . E 5 -21.054 -8.325 20.352 1 55.58 ? N3 FAD 700 A 1 
HETATM 27 C C4 FAD . . . E 5 -20.534 -7.865 21.551 1 55.54 ? C4 FAD 700 A 1 
HETATM 28 O O4 FAD . . . E 5 -21.278 -7.363 22.388 1 55.37 ? O4 FAD 700 A 1 
HETATM 29 C C4X FAD . . . E 5 -19.17 -7.969 21.815 1 55.47 ? C4X FAD 700 A 1 
HETATM 30 N N5 FAD . . . E 5 -18.651 -7.505 23.008 1 55.65 ? N5 FAD 700 A 1 
HETATM 31 C C5X FAD . . . E 5 -17.3 -7.612 23.27 1 55.45 ? C5X FAD 700 A 1 
HETATM 32 C C6 FAD . . . E 5 -16.793 -7.148 24.481 1 55.66 ? C6 FAD 700 A 1 
HETATM 33 C C7 FAD . . . E 5 -15.431 -7.243 24.757 1 55.69 ? C7 FAD 700 A 1 
HETATM 34 C C7M FAD . . . E 5 -14.91 -6.733 26.072 1 55.7 ? C7M FAD 700 A 1 
HETATM 35 C C8 FAD . . . E 5 -14.582 -7.815 23.807 1 55.5 ? C8 FAD 700 A 1 
HETATM 36 C C8M FAD . . . E 5 -13.113 -7.925 24.049 1 55.36 ? C8M FAD 700 A 1 
HETATM 37 C C9 FAD . . . E 5 -15.089 -8.281 22.599 1 55.28 ? C9 FAD 700 A 1 
HETATM 38 C C9A FAD . . . E 5 -16.45 -8.181 22.325 1 55.05 ? C9A FAD 700 A 1 
HETATM 39 N N10 FAD . . . E 5 -16.963 -8.637 21.124 1 54.86 ? N10 FAD 700 A 1 
HETATM 40 C C10 FAD . . . E 5 -18.324 -8.536 20.869 1 55.2 ? C10 FAD 700 A 1 
HETATM 41 C C1' FAD . . . E 5 -16.041 -9.27 20.114 1 54.58 ? C1' FAD 700 A 1 
HETATM 42 C C2' FAD . . . E 5 -16.232 -10.79 20.213 1 53.9 ? C2' FAD 700 A 1 
HETATM 43 O O2' FAD . . . E 5 -16.897 -11.107 21.423 1 54.07 ? O2' FAD 700 A 1 
HETATM 44 C C3' FAD . . . E 5 -14.948 -11.611 20.167 1 53.26 ? C3' FAD 700 A 1 
HETATM 45 O O3' FAD . . . E 5 -14.256 -11.382 18.961 1 53.06 ? O3' FAD 700 A 1 
HETATM 46 C C4' FAD . . . E 5 -15.34 -13.083 20.3 1 52.68 ? C4' FAD 700 A 1 
HETATM 47 O O4' FAD . . . E 5 -15.846 -13.301 21.599 1 52.5 ? O4' FAD 700 A 1 
HETATM 48 C C5' FAD . . . E 5 -14.208 -14.072 20.058 1 51.94 ? C5' FAD 700 A 1 
HETATM 49 O O5' FAD . . . E 5 -14.668 -15.327 20.503 1 51.21 ? O5' FAD 700 A 1 
HETATM 50 P P FAD . . . E 5 -13.974 -16.702 20.045 1 51.51 ? P FAD 700 A 1 
HETATM 51 O O1P FAD . . . E 5 -15.026 -17.758 19.798 1 51.58 ? O1P FAD 700 A 1 
HETATM 52 O O2P FAD . . . E 5 -13.117 -16.509 18.811 1 51.48 ? O2P FAD 700 A 1 
HETATM 53 O O3P FAD . . . E 5 -13.114 -17.188 21.318 1 51.14 ? O3P FAD 700 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           53 
#