data_3AEC # _model_server_result.job_id HjmUqBmaVUFXGtExYOuPpg _model_server_result.datetime_utc '2025-03-01 00:36:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3aec # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1305}' # _entry.id 3AEC # _exptl.entry_id 3AEC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AEC _cell.length_a 70.966 _cell.length_b 83.994 _cell.length_c 295.254 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AEC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 F FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 F FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc3 B SG CYS 158 B CYS 158 1_555 G FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc4 B SG CYS 161 B CYS 161 1_555 G FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc5 B SG CYS 164 B CYS 164 1_555 G FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc6 B SG CYS 168 B CYS 168 1_555 H FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc7 B SG CYS 215 B CYS 215 1_555 H FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc8 B SG CYS 221 B CYS 221 1_555 H FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc9 B SG CYS 225 B CYS 225 1_555 G FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc10 C NE2 HIS 98 C HIS 101 1_555 I FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc11 I FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 374 n n CHA C4D HEM doub 375 n n CHA HHA HEM sing 376 n n CHB C4A HEM sing 377 n n CHB C1B HEM doub 378 n n CHB HHB HEM sing 379 n n CHC C4B HEM sing 380 n n CHC C1C HEM doub 381 n n CHC HHC HEM sing 382 n n CHD C4C HEM doub 383 n n CHD C1D HEM sing 384 n n CHD HHD HEM sing 385 n n C1A C2A HEM doub 386 n y C1A NA HEM sing 387 n y C2A C3A HEM sing 388 n y C2A CAA HEM sing 389 n n C3A C4A HEM doub 390 n y C3A CMA HEM sing 391 n n C4A NA HEM sing 392 n y CMA HMA HEM sing 393 n n CMA HMAA HEM sing 394 n n CMA HMAB HEM sing 395 n n CAA CBA HEM sing 396 n n CAA HAA HEM sing 397 n n CAA HAAA HEM sing 398 n n CBA CGA HEM sing 399 n n CBA HBA HEM sing 400 n n CBA HBAA HEM sing 401 n n CGA O1A HEM doub 402 n n CGA O2A HEM sing 403 n n C1B C2B HEM sing 404 n n C1B NB HEM sing 405 n n C2B C3B HEM doub 406 n n C2B CMB HEM sing 407 n n C3B C4B HEM sing 408 n n C3B CAB HEM sing 409 n n C4B NB HEM doub 410 n n CMB HMB HEM sing 411 n n CMB HMBA HEM sing 412 n n CMB HMBB HEM sing 413 n n CAB CBB HEM doub 414 n n CAB HAB HEM sing 415 n n CBB HBB HEM sing 416 n n CBB HBBA HEM sing 417 n n C1C C2C HEM sing 418 n y C1C NC HEM sing 419 n y C2C C3C HEM doub 420 n y C2C CMC HEM sing 421 n n C3C C4C HEM sing 422 n y C3C CAC HEM sing 423 n n C4C NC HEM sing 424 n y CMC HMC HEM sing 425 n n CMC HMCA HEM sing 426 n n CMC HMCB HEM sing 427 n n CAC CBC HEM doub 428 n n CAC HAC HEM sing 429 n n CBC HBC HEM sing 430 n n CBC HBCA HEM sing 431 n n C1D C2D HEM sing 432 n n C1D ND HEM doub 433 n n C2D C3D HEM doub 434 n n C2D CMD HEM sing 435 n n C3D C4D HEM sing 436 n n C3D CAD HEM sing 437 n n C4D ND HEM sing 438 n n CMD HMD HEM sing 439 n n CMD HMDA HEM sing 440 n n CMD HMDB HEM sing 441 n n CAD CBD HEM sing 442 n n CAD HAD HEM sing 443 n n CAD HADA HEM sing 444 n n CBD CGD HEM sing 445 n n CBD HBD HEM sing 446 n n CBD HBDA HEM sing 447 n n CGD O1D HEM doub 448 n n CGD O2D HEM sing 449 n n O2A H2A HEM sing 450 n n O2D H2D HEM sing 451 n n FE NA HEM sing 452 n n FE NB HEM sing 453 n n FE NC HEM sing 454 n n FE ND HEM sing 455 n n # _atom_sites.entry_id 3AEC _atom_sites.fract_transf_matrix[1][1] 0.014091 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011906 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 FAD A 1 700 700 FAD FAD . F 6 FES B 1 302 302 FES FES . G 7 SF4 B 1 303 303 SF4 SF4 . H 8 F3S B 1 304 304 F3S F3S . I 9 HEM C 1 1305 1305 HEM HEM . J 10 EBM C 1 1201 1201 EBM EBM . K 11 EPH D 1 1306 1306 EPH EPH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . I 9 -33.262 -26.994 65.184 1 83.25 ? CHA HEM 1305 C 1 HETATM 2 C CHB HEM . . . I 9 -37.307 -24.466 66.023 1 83.33 ? CHB HEM 1305 C 1 HETATM 3 C CHC HEM . . . I 9 -37.245 -25.975 70.638 1 83.23 ? CHC HEM 1305 C 1 HETATM 4 C CHD HEM . . . I 9 -33.747 -29.169 69.533 1 83.06 ? CHD HEM 1305 C 1 HETATM 5 C C1A HEM . . . I 9 -34.406 -26.255 64.977 1 83.31 ? C1A HEM 1305 C 1 HETATM 6 C C2A HEM . . . I 9 -34.949 -25.845 63.695 1 83.49 ? C2A HEM 1305 C 1 HETATM 7 C C3A HEM . . . I 9 -36.068 -25.146 63.927 1 83.42 ? C3A HEM 1305 C 1 HETATM 8 C C4A HEM . . . I 9 -36.27 -25.091 65.363 1 83.31 ? C4A HEM 1305 C 1 HETATM 9 C CMA HEM . . . I 9 -36.988 -24.505 62.86 1 83.46 ? CMA HEM 1305 C 1 HETATM 10 C CAA HEM . . . I 9 -34.334 -26.163 62.31 1 83.81 ? CAA HEM 1305 C 1 HETATM 11 C CBA HEM . . . I 9 -33.212 -25.171 62.017 1 84.22 ? CBA HEM 1305 C 1 HETATM 12 C CGA HEM . . . I 9 -32.844 -25.233 60.558 1 84.48 ? CGA HEM 1305 C 1 HETATM 13 O O1A HEM . . . I 9 -33.438 -24.465 59.757 1 84.52 ? O1A HEM 1305 C 1 HETATM 14 O O2A HEM . . . I 9 -31.955 -26.048 60.199 1 84.73 ? O2A HEM 1305 C 1 HETATM 15 C C1B HEM . . . I 9 -37.614 -24.597 67.362 1 83.33 ? C1B HEM 1305 C 1 HETATM 16 C C2B HEM . . . I 9 -38.635 -23.86 68.085 1 83.36 ? C2B HEM 1305 C 1 HETATM 17 C C3B HEM . . . I 9 -38.616 -24.277 69.357 1 83.33 ? C3B HEM 1305 C 1 HETATM 18 C C4B HEM . . . I 9 -37.586 -25.292 69.488 1 83.24 ? C4B HEM 1305 C 1 HETATM 19 C CMB HEM . . . I 9 -39.571 -22.785 67.481 1 83.3 ? CMB HEM 1305 C 1 HETATM 20 C CAB HEM . . . I 9 -39.535 -23.773 70.493 1 83.41 ? CAB HEM 1305 C 1 HETATM 21 C CBB HEM . . . I 9 -40.795 -24.215 70.567 1 83.44 ? CBB HEM 1305 C 1 HETATM 22 C C1C HEM . . . I 9 -36.338 -27.013 70.738 1 83.19 ? C1C HEM 1305 C 1 HETATM 23 C C2C HEM . . . I 9 -36.124 -27.87 71.891 1 83.1 ? C2C HEM 1305 C 1 HETATM 24 C C3C HEM . . . I 9 -35.16 -28.746 71.583 1 83.08 ? C3C HEM 1305 C 1 HETATM 25 C C4C HEM . . . I 9 -34.725 -28.482 70.224 1 83.11 ? C4C HEM 1305 C 1 HETATM 26 C CMC HEM . . . I 9 -36.878 -27.782 73.238 1 82.97 ? CMC HEM 1305 C 1 HETATM 27 C CAC HEM . . . I 9 -34.604 -29.855 72.504 1 83.06 ? CAC HEM 1305 C 1 HETATM 28 C CBC HEM . . . I 9 -35.078 -31.101 72.392 1 83.14 ? CBC HEM 1305 C 1 HETATM 29 C C1D HEM . . . I 9 -33.251 -28.884 68.276 1 82.94 ? C1D HEM 1305 C 1 HETATM 30 C C2D HEM . . . I 9 -32.147 -29.56 67.629 1 82.92 ? C2D HEM 1305 C 1 HETATM 31 C C3D HEM . . . I 9 -31.983 -28.88 66.262 1 82.98 ? C3D HEM 1305 C 1 HETATM 32 C C4D HEM . . . I 9 -33.018 -27.864 66.225 1 83.07 ? C4D HEM 1305 C 1 HETATM 33 C CMD HEM . . . I 9 -31.301 -30.724 68.19 1 82.97 ? CMD HEM 1305 C 1 HETATM 34 C CAD HEM . . . I 9 -30.939 -29.242 65.175 1 83.05 ? CAD HEM 1305 C 1 HETATM 35 C CBD HEM . . . I 9 -30.12 -28.037 64.716 1 83.18 ? CBD HEM 1305 C 1 HETATM 36 C CGD HEM . . . I 9 -30.15 -27.894 63.208 1 83.37 ? CGD HEM 1305 C 1 HETATM 37 O O1D HEM . . . I 9 -30.438 -28.885 62.485 1 83.31 ? O1D HEM 1305 C 1 HETATM 38 O O2D HEM . . . I 9 -29.872 -26.769 62.715 1 83.52 ? O2D HEM 1305 C 1 HETATM 39 N NA HEM . . . I 9 -35.238 -25.78 65.97 1 83.22 ? NA HEM 1305 C 1 HETATM 40 N NB HEM . . . I 9 -36.996 -25.459 68.249 1 83.21 ? NB HEM 1305 C 1 HETATM 41 N NC HEM . . . I 9 -35.465 -27.42 69.744 1 83.13 ? NC HEM 1305 C 1 HETATM 42 N ND HEM . . . I 9 -33.731 -27.902 67.42 1 83.01 ? ND HEM 1305 C 1 HETATM 43 FE FE HEM . . . I 9 -35.317 -26.617 67.867 1 83.05 ? FE HEM 1305 C 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #