data_3AEC # _model_server_result.job_id wBg1kPfth5FtELBCML2h8A _model_server_result.datetime_utc '2025-03-01 00:28:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3aec # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":700}' # _entry.id 3AEC # _exptl.entry_id 3AEC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AEC _cell.length_a 70.966 _cell.length_b 83.994 _cell.length_c 295.254 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AEC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 F FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 F FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc3 B SG CYS 158 B CYS 158 1_555 G FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc4 B SG CYS 161 B CYS 161 1_555 G FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc5 B SG CYS 164 B CYS 164 1_555 G FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc6 B SG CYS 168 B CYS 168 1_555 H FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc7 B SG CYS 215 B CYS 215 1_555 H FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc8 B SG CYS 221 B CYS 221 1_555 H FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc9 B SG CYS 225 B CYS 225 1_555 G FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc10 C NE2 HIS 98 C HIS 101 1_555 I FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc11 I FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 233 n n PA O2A FAD sing 234 n n PA O5B FAD sing 235 n n PA O3P FAD sing 236 n n O2A HOA2 FAD sing 237 n n O5B C5B FAD sing 238 n n C5B C4B FAD sing 239 n n C5B H51A FAD sing 240 n n C5B H52A FAD sing 241 n n C4B O4B FAD sing 242 n n C4B C3B FAD sing 243 n n C4B H4B FAD sing 244 n n O4B C1B FAD sing 245 n n C3B O3B FAD sing 246 n n C3B C2B FAD sing 247 n n C3B H3B FAD sing 248 n n O3B HO3A FAD sing 249 n n C2B O2B FAD sing 250 n n C2B C1B FAD sing 251 n n C2B H2B FAD sing 252 n n O2B HO2A FAD sing 253 n n C1B N9A FAD sing 254 n n C1B H1B FAD sing 255 n n N9A C8A FAD sing 256 n y N9A C4A FAD sing 257 n y C8A N7A FAD doub 258 n y C8A H8A FAD sing 259 n n N7A C5A FAD sing 260 n y C5A C6A FAD sing 261 n y C5A C4A FAD doub 262 n y C6A N6A FAD sing 263 n n C6A N1A FAD doub 264 n y N6A H61A FAD sing 265 n n N6A H62A FAD sing 266 n n N1A C2A FAD sing 267 n y C2A N3A FAD doub 268 n y C2A H2A FAD sing 269 n n N3A C4A FAD sing 270 n y N1 C2 FAD sing 271 n n N1 C10 FAD doub 272 n n C2 O2 FAD doub 273 n n C2 N3 FAD sing 274 n n N3 C4 FAD sing 275 n n N3 HN3 FAD sing 276 n n C4 O4 FAD doub 277 n n C4 C4X FAD sing 278 n n C4X N5 FAD doub 279 n n C4X C10 FAD sing 280 n n N5 C5X FAD sing 281 n n C5X C6 FAD doub 282 n y C5X C9A FAD sing 283 n y C6 C7 FAD sing 284 n y C6 H6 FAD sing 285 n n C7 C7M FAD sing 286 n n C7 C8 FAD doub 287 n y C7M HM71 FAD sing 288 n n C7M HM72 FAD sing 289 n n C7M HM73 FAD sing 290 n n C8 C8M FAD sing 291 n n C8 C9 FAD sing 292 n y C8M HM81 FAD sing 293 n n C8M HM82 FAD sing 294 n n C8M HM83 FAD sing 295 n n C9 C9A FAD doub 296 n y C9 H9 FAD sing 297 n n C9A N10 FAD sing 298 n n N10 C10 FAD sing 299 n n N10 C1' FAD sing 300 n n C1' C2' FAD sing 301 n n C1' "H1'1" FAD sing 302 n n C1' "H1'2" FAD sing 303 n n C2' O2' FAD sing 304 n n C2' C3' FAD sing 305 n n C2' H2' FAD sing 306 n n O2' HO2' FAD sing 307 n n C3' O3' FAD sing 308 n n C3' C4' FAD sing 309 n n C3' H3' FAD sing 310 n n O3' HO3' FAD sing 311 n n C4' O4' FAD sing 312 n n C4' C5' FAD sing 313 n n C4' H4' FAD sing 314 n n O4' HO4' FAD sing 315 n n C5' O5' FAD sing 316 n n C5' "H5'1" FAD sing 317 n n C5' "H5'2" FAD sing 318 n n O5' P FAD sing 319 n n P O1P FAD doub 320 n n P O2P FAD sing 321 n n P O3P FAD sing 322 n n O2P HOP2 FAD sing 323 n n # _atom_sites.entry_id 3AEC _atom_sites.fract_transf_matrix[1][1] 0.014091 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011906 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 FAD A 1 700 700 FAD FAD . F 6 FES B 1 302 302 FES FES . G 7 SF4 B 1 303 303 SF4 SF4 . H 8 F3S B 1 304 304 F3S F3S . I 9 HEM C 1 1305 1305 HEM HEM . J 10 EBM C 1 1201 1201 EBM EBM . K 11 EPH D 1 1306 1306 EPH EPH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . E 5 -12.186 -16.675 22.832 1 71.28 ? PA FAD 700 A 1 HETATM 2 O O1A FAD . . . E 5 -13.586 -16.351 23.288 1 71.27 ? O1A FAD 700 A 1 HETATM 3 O O2A FAD . . . E 5 -11.209 -15.607 23.259 1 71.39 ? O2A FAD 700 A 1 HETATM 4 O O5B FAD . . . E 5 -11.769 -18.109 23.427 1 71.44 ? O5B FAD 700 A 1 HETATM 5 C C5B FAD . . . E 5 -10.413 -18.485 23.468 1 71.8 ? C5B FAD 700 A 1 HETATM 6 C C4B FAD . . . E 5 -10.313 -19.952 23.858 1 71.95 ? C4B FAD 700 A 1 HETATM 7 O O4B FAD . . . E 5 -9.183 -20.538 23.24 1 71.92 ? O4B FAD 700 A 1 HETATM 8 C C3B FAD . . . E 5 -10.15 -20.103 25.362 1 72.09 ? C3B FAD 700 A 1 HETATM 9 O O3B FAD . . . E 5 -11.217 -20.873 25.863 1 72.33 ? O3B FAD 700 A 1 HETATM 10 C C2B FAD . . . E 5 -8.822 -20.812 25.557 1 72.04 ? C2B FAD 700 A 1 HETATM 11 O O2B FAD . . . E 5 -8.922 -21.895 26.451 1 72.19 ? O2B FAD 700 A 1 HETATM 12 C C1B FAD . . . E 5 -8.453 -21.312 24.171 1 71.83 ? C1B FAD 700 A 1 HETATM 13 N N9A FAD . . . E 5 -6.997 -21.211 23.949 1 71.52 ? N9A FAD 700 A 1 HETATM 14 C C8A FAD . . . E 5 -6.268 -20.085 23.663 1 71.35 ? C8A FAD 700 A 1 HETATM 15 N N7A FAD . . . E 5 -4.968 -20.439 23.539 1 71.19 ? N7A FAD 700 A 1 HETATM 16 C C5A FAD . . . E 5 -4.859 -21.771 23.739 1 71.27 ? C5A FAD 700 A 1 HETATM 17 C C6A FAD . . . E 5 -3.774 -22.643 23.729 1 71.37 ? C6A FAD 700 A 1 HETATM 18 N N6A FAD . . . E 5 -2.547 -22.156 23.874 1 71.51 ? N6A FAD 700 A 1 HETATM 19 N N1A FAD . . . E 5 -3.984 -23.987 23.974 1 71.38 ? N1A FAD 700 A 1 HETATM 20 C C2A FAD . . . E 5 -5.254 -24.467 24.231 1 71.3 ? C2A FAD 700 A 1 HETATM 21 N N3A FAD . . . E 5 -6.322 -23.592 24.24 1 71.28 ? N3A FAD 700 A 1 HETATM 22 C C4A FAD . . . E 5 -6.129 -22.269 23.999 1 71.34 ? C4A FAD 700 A 1 HETATM 23 N N1 FAD . . . E 5 -18.365 -9.346 19.965 1 73.2 ? N1 FAD 700 A 1 HETATM 24 C C2 FAD . . . E 5 -19.726 -9.204 19.778 1 73.22 ? C2 FAD 700 A 1 HETATM 25 O O2 FAD . . . E 5 -20.247 -9.633 18.75 1 73.42 ? O2 FAD 700 A 1 HETATM 26 N N3 FAD . . . E 5 -20.496 -8.591 20.748 1 73.03 ? N3 FAD 700 A 1 HETATM 27 C C4 FAD . . . E 5 -19.898 -8.118 21.9 1 73.02 ? C4 FAD 700 A 1 HETATM 28 O O4 FAD . . . E 5 -20.588 -7.575 22.757 1 73.09 ? O4 FAD 700 A 1 HETATM 29 C C4X FAD . . . E 5 -18.524 -8.257 22.091 1 72.98 ? C4X FAD 700 A 1 HETATM 30 N N5 FAD . . . E 5 -17.924 -7.784 23.241 1 73 ? N5 FAD 700 A 1 HETATM 31 C C5X FAD . . . E 5 -16.564 -7.925 23.429 1 72.9 ? C5X FAD 700 A 1 HETATM 32 C C6 FAD . . . E 5 -15.974 -7.446 24.597 1 73.01 ? C6 FAD 700 A 1 HETATM 33 C C7 FAD . . . E 5 -14.602 -7.577 24.799 1 73.09 ? C7 FAD 700 A 1 HETATM 34 C C7M FAD . . . E 5 -14.002 -7.044 26.07 1 73.06 ? C7M FAD 700 A 1 HETATM 35 C C8 FAD . . . E 5 -13.82 -8.2 23.818 1 73.14 ? C8 FAD 700 A 1 HETATM 36 C C8M FAD . . . E 5 -12.337 -8.364 23.968 1 73.22 ? C8M FAD 700 A 1 HETATM 37 C C9 FAD . . . E 5 -14.414 -8.678 22.654 1 72.98 ? C9 FAD 700 A 1 HETATM 38 C C9A FAD . . . E 5 -15.786 -8.546 22.451 1 72.79 ? C9A FAD 700 A 1 HETATM 39 N N10 FAD . . . E 5 -16.381 -9.022 21.294 1 72.71 ? N10 FAD 700 A 1 HETATM 40 C C10 FAD . . . E 5 -17.75 -8.874 21.112 1 72.93 ? C10 FAD 700 A 1 HETATM 41 C C1' FAD . . . E 5 -15.541 -9.7 20.241 1 72.55 ? C1' FAD 700 A 1 HETATM 42 C C2' FAD . . . E 5 -15.673 -11.231 20.315 1 72.28 ? C2' FAD 700 A 1 HETATM 43 O O2' FAD . . . E 5 -16.859 -11.612 20.985 1 72.3 ? O2' FAD 700 A 1 HETATM 44 C C3' FAD . . . E 5 -14.479 -11.908 20.985 1 72.06 ? C3' FAD 700 A 1 HETATM 45 O O3' FAD . . . E 5 -13.33 -11.723 20.19 1 72.2 ? O3' FAD 700 A 1 HETATM 46 C C4' FAD . . . E 5 -14.767 -13.393 21.231 1 71.77 ? C4' FAD 700 A 1 HETATM 47 O O4' FAD . . . E 5 -14.664 -13.652 22.612 1 71.94 ? O4' FAD 700 A 1 HETATM 48 C C5' FAD . . . E 5 -13.853 -14.352 20.473 1 71.46 ? C5' FAD 700 A 1 HETATM 49 O O5' FAD . . . E 5 -14.309 -15.668 20.695 1 71.12 ? O5' FAD 700 A 1 HETATM 50 P P FAD . . . E 5 -13.424 -16.954 20.298 1 71.12 ? P FAD 700 A 1 HETATM 51 O O1P FAD . . . E 5 -14.191 -18.217 20.614 1 71.06 ? O1P FAD 700 A 1 HETATM 52 O O2P FAD . . . E 5 -13.027 -16.916 18.841 1 71.06 ? O2P FAD 700 A 1 HETATM 53 O O3P FAD . . . E 5 -12.117 -16.871 21.234 1 71.18 ? O3P FAD 700 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #