data_3AED # _model_server_result.job_id 71KgWjb0p77or6FcMHopcw _model_server_result.datetime_utc '2025-01-25 11:30:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3aed # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1201}' # _entry.id 3AED # _exptl.entry_id 3AED _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 323.129 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-iodo-N-phenylbenzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AED _cell.length_a 71.523 _cell.length_b 84.074 _cell.length_c 295.087 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AED _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 11 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 H FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc6 B SG CYS 161 B CYS 161 1_555 H FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc7 B SG CYS 164 B CYS 164 1_555 H FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc8 B SG CYS 168 B CYS 168 1_555 I FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc9 B SG CYS 215 B CYS 215 1_555 I FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc10 B SG CYS 221 B CYS 221 1_555 I FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc11 B SG CYS 225 B CYS 225 1_555 H FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc12 C NE2 HIS 98 C HIS 101 1_555 J FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc13 J FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? # _chem_comp.formula 'C13 H10 I N O' _chem_comp.formula_weight 323.129 _chem_comp.id BOL _chem_comp.mon_nstd_flag . _chem_comp.name 2-iodo-N-phenylbenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag I C1 BOL sing 70 n n N C7 BOL sing 71 n n N C8 BOL sing 72 n n O C7 BOL doub 73 n n C1 C2 BOL doub 74 n y C1 C6 BOL sing 75 n y C2 C3 BOL sing 76 n y C2 C7 BOL sing 77 n n C3 C4 BOL doub 78 n y C4 C5 BOL sing 79 n y C5 C6 BOL doub 80 n y C8 C9 BOL doub 81 n y C8 C13 BOL sing 82 n y C9 C10 BOL sing 83 n y C10 C11 BOL doub 84 n y C11 C12 BOL sing 85 n y C12 C13 BOL doub 86 n y N HN BOL sing 87 n n C3 H3 BOL sing 88 n n C4 H4 BOL sing 89 n n C5 H5 BOL sing 90 n n C6 H6 BOL sing 91 n n C9 H9 BOL sing 92 n n C10 H10 BOL sing 93 n n C11 H11 BOL sing 94 n n C12 H12 BOL sing 95 n n C13 H13 BOL sing 96 n n # _atom_sites.entry_id 3AED _atom_sites.fract_transf_matrix[1][1] 0.013982 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011894 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003389 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 FAD A 1 700 700 FAD FAD . F 6 MLI A 1 701 701 MLI MLI . G 7 FES B 1 302 302 FES FES . H 8 SF4 B 1 303 303 SF4 SF4 . I 9 F3S B 1 304 304 F3S F3S . J 10 HEM C 1 1305 1305 HEM HEM . K 11 BOL C 1 1201 1201 BOL BOL . L 12 EPH D 1 1306 1306 EPH EPH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 I I BOL . . . K 11 -23.691 -27.412 58.717 1 87.01 ? I BOL 1201 C 1 HETATM 2 N N BOL . . . K 11 -21.057 -25.163 61.696 1 85.11 ? N BOL 1201 C 1 HETATM 3 O O BOL . . . K 11 -21.552 -26.63 60.113 1 85.1 ? O BOL 1201 C 1 HETATM 4 C C1 BOL . . . K 11 -24.317 -26.036 60.16 1 85.99 ? C1 BOL 1201 C 1 HETATM 5 C C2 BOL . . . K 11 -23.375 -25.401 60.975 1 85.42 ? C2 BOL 1201 C 1 HETATM 6 C C3 BOL . . . K 11 -23.807 -24.48 61.933 1 85.46 ? C3 BOL 1201 C 1 HETATM 7 C C4 BOL . . . K 11 -25.166 -24.199 62.073 1 85.62 ? C4 BOL 1201 C 1 HETATM 8 C C5 BOL . . . K 11 -26.103 -24.835 61.259 1 85.77 ? C5 BOL 1201 C 1 HETATM 9 C C6 BOL . . . K 11 -25.677 -25.754 60.301 1 85.96 ? C6 BOL 1201 C 1 HETATM 10 C C7 BOL . . . K 11 -21.906 -25.705 60.827 1 85.17 ? C7 BOL 1201 C 1 HETATM 11 C C8 BOL . . . K 11 -20.153 -24.086 61.345 1 85.05 ? C8 BOL 1201 C 1 HETATM 12 C C9 BOL . . . K 11 -20.689 -22.892 60.858 1 85.14 ? C9 BOL 1201 C 1 HETATM 13 C C10 BOL . . . K 11 -19.792 -21.874 60.532 1 85.13 ? C10 BOL 1201 C 1 HETATM 14 C C11 BOL . . . K 11 -18.417 -22.076 60.704 1 85.09 ? C11 BOL 1201 C 1 HETATM 15 C C12 BOL . . . K 11 -17.917 -23.287 61.199 1 84.94 ? C12 BOL 1201 C 1 HETATM 16 C C13 BOL . . . K 11 -18.795 -24.319 61.53 1 84.92 ? C13 BOL 1201 C 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 16 #