data_3AED
#
_model_server_result.job_id            -6E3mMlZx89_RHDRQVPQKA 
_model_server_result.datetime_utc      '2025-01-10 12:52:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3aed 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1305}' 
#
_entry.id    3AED 
#
_exptl.entry_id    3AED 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3AED 
_cell.length_a            71.523 
_cell.length_b            84.074 
_cell.length_c            295.087 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3AED 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      10 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? 
metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? 
metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 H FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc6 B SG CYS 161 B CYS 161 1_555 H FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc7 B SG CYS 164 B CYS 164 1_555 H FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc8 B SG CYS 168 B CYS 168 1_555 I FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? 
metalc ? metalc9 B SG CYS 215 B CYS 215 1_555 I FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? 
metalc ? metalc10 B SG CYS 221 B CYS 221 1_555 I FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? 
metalc ? metalc11 B SG CYS 225 B CYS 225 1_555 H FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? 
metalc ? metalc12 C NE2 HIS 98 C HIS 101 1_555 J FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc13 J FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 376 n n 
CHA C4D HEM doub 377 n n 
CHA HHA HEM sing 378 n n 
CHB C4A HEM sing 379 n n 
CHB C1B HEM doub 380 n n 
CHB HHB HEM sing 381 n n 
CHC C4B HEM sing 382 n n 
CHC C1C HEM doub 383 n n 
CHC HHC HEM sing 384 n n 
CHD C4C HEM doub 385 n n 
CHD C1D HEM sing 386 n n 
CHD HHD HEM sing 387 n n 
C1A C2A HEM doub 388 n y 
C1A NA HEM sing 389 n y 
C2A C3A HEM sing 390 n y 
C2A CAA HEM sing 391 n n 
C3A C4A HEM doub 392 n y 
C3A CMA HEM sing 393 n n 
C4A NA HEM sing 394 n y 
CMA HMA HEM sing 395 n n 
CMA HMAA HEM sing 396 n n 
CMA HMAB HEM sing 397 n n 
CAA CBA HEM sing 398 n n 
CAA HAA HEM sing 399 n n 
CAA HAAA HEM sing 400 n n 
CBA CGA HEM sing 401 n n 
CBA HBA HEM sing 402 n n 
CBA HBAA HEM sing 403 n n 
CGA O1A HEM doub 404 n n 
CGA O2A HEM sing 405 n n 
C1B C2B HEM sing 406 n n 
C1B NB HEM sing 407 n n 
C2B C3B HEM doub 408 n n 
C2B CMB HEM sing 409 n n 
C3B C4B HEM sing 410 n n 
C3B CAB HEM sing 411 n n 
C4B NB HEM doub 412 n n 
CMB HMB HEM sing 413 n n 
CMB HMBA HEM sing 414 n n 
CMB HMBB HEM sing 415 n n 
CAB CBB HEM doub 416 n n 
CAB HAB HEM sing 417 n n 
CBB HBB HEM sing 418 n n 
CBB HBBA HEM sing 419 n n 
C1C C2C HEM sing 420 n y 
C1C NC HEM sing 421 n y 
C2C C3C HEM doub 422 n y 
C2C CMC HEM sing 423 n n 
C3C C4C HEM sing 424 n y 
C3C CAC HEM sing 425 n n 
C4C NC HEM sing 426 n y 
CMC HMC HEM sing 427 n n 
CMC HMCA HEM sing 428 n n 
CMC HMCB HEM sing 429 n n 
CAC CBC HEM doub 430 n n 
CAC HAC HEM sing 431 n n 
CBC HBC HEM sing 432 n n 
CBC HBCA HEM sing 433 n n 
C1D C2D HEM sing 434 n n 
C1D ND HEM doub 435 n n 
C2D C3D HEM doub 436 n n 
C2D CMD HEM sing 437 n n 
C3D C4D HEM sing 438 n n 
C3D CAD HEM sing 439 n n 
C4D ND HEM sing 440 n n 
CMD HMD HEM sing 441 n n 
CMD HMDA HEM sing 442 n n 
CMD HMDB HEM sing 443 n n 
CAD CBD HEM sing 444 n n 
CAD HAD HEM sing 445 n n 
CAD HADA HEM sing 446 n n 
CBD CGD HEM sing 447 n n 
CBD HBD HEM sing 448 n n 
CBD HBDA HEM sing 449 n n 
CGD O1D HEM doub 450 n n 
CGD O2D HEM sing 451 n n 
O2A H2A HEM sing 452 n n 
O2D H2D HEM sing 453 n n 
FE NA HEM sing 454 n n 
FE NB HEM sing 455 n n 
FE NC HEM sing 456 n n 
FE ND HEM sing 457 n n 
#
_atom_sites.entry_id                     3AED 
_atom_sites.fract_transf_matrix[1][1]    0.013982 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011894 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003389 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 FAD A 1 700 700 FAD FAD . 
F 6 MLI A 1 701 701 MLI MLI . 
G 7 FES B 1 302 302 FES FES . 
H 8 SF4 B 1 303 303 SF4 SF4 . 
I 9 F3S B 1 304 304 F3S F3S . 
J 10 HEM C 1 1305 1305 HEM HEM . 
K 11 BOL C 1 1201 1201 BOL BOL . 
L 12 EPH D 1 1306 1306 EPH EPH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . J 10 -33.519 -26.897 65.276 1 82.78 ? CHA HEM 1305 C 1 
HETATM 2 C CHB HEM . . . J 10 -37.685 -24.47 65.75 1 83.34 ? CHB HEM 1305 C 1 
HETATM 3 C CHC HEM . . . J 10 -37.771 -25.662 70.459 1 83.07 ? CHC HEM 1305 C 1 
HETATM 4 C CHD HEM . . . J 10 -34.2 -28.868 69.7 1 82.66 ? CHD HEM 1305 C 1 
HETATM 5 C C1A HEM . . . J 10 -34.658 -26.188 64.967 1 83.08 ? C1A HEM 1305 C 1 
HETATM 6 C C2A HEM . . . J 10 -35.094 -25.79 63.642 1 83.37 ? C2A HEM 1305 C 1 
HETATM 7 C C3A HEM . . . J 10 -36.248 -25.119 63.77 1 83.37 ? C3A HEM 1305 C 1 
HETATM 8 C C4A HEM . . . J 10 -36.578 -25.067 65.183 1 83.27 ? C4A HEM 1305 C 1 
HETATM 9 C CMA HEM . . . J 10 -37.094 -24.501 62.629 1 83.43 ? CMA HEM 1305 C 1 
HETATM 10 C CAA HEM . . . J 10 -34.34 -26.109 62.328 1 83.74 ? CAA HEM 1305 C 1 
HETATM 11 C CBA HEM . . . J 10 -33.463 -24.932 61.918 1 84.13 ? CBA HEM 1305 C 1 
HETATM 12 C CGA HEM . . . J 10 -33.464 -24.839 60.416 1 84.44 ? CGA HEM 1305 C 1 
HETATM 13 O O1A HEM . . . J 10 -34.404 -24.22 59.848 1 84.56 ? O1A HEM 1305 C 1 
HETATM 14 O O2A HEM . . . J 10 -32.523 -25.39 59.789 1 84.56 ? O2A HEM 1305 C 1 
HETATM 15 C C1B HEM . . . J 10 -38.002 -24.471 67.094 1 83.38 ? C1B HEM 1305 C 1 
HETATM 16 C C2B HEM . . . J 10 -38.926 -23.573 67.77 1 83.41 ? C2B HEM 1305 C 1 
HETATM 17 C C3B HEM . . . J 10 -38.942 -23.906 69.067 1 83.36 ? C3B HEM 1305 C 1 
HETATM 18 C C4B HEM . . . J 10 -38.037 -25.024 69.265 1 83.22 ? C4B HEM 1305 C 1 
HETATM 19 C CMB HEM . . . J 10 -39.744 -22.434 67.111 1 83.12 ? CMB HEM 1305 C 1 
HETATM 20 C CAB HEM . . . J 10 -39.785 -23.228 70.17 1 83.41 ? CAB HEM 1305 C 1 
HETATM 21 C CBB HEM . . . J 10 -40.968 -23.752 70.505 1 83.36 ? CBB HEM 1305 C 1 
HETATM 22 C C1C HEM . . . J 10 -36.852 -26.671 70.663 1 83.04 ? C1C HEM 1305 C 1 
HETATM 23 C C2C HEM . . . J 10 -36.657 -27.426 71.888 1 82.98 ? C2C HEM 1305 C 1 
HETATM 24 C C3C HEM . . . J 10 -35.671 -28.31 71.675 1 82.98 ? C3C HEM 1305 C 1 
HETATM 25 C C4C HEM . . . J 10 -35.204 -28.147 70.311 1 82.91 ? C4C HEM 1305 C 1 
HETATM 26 C CMC HEM . . . J 10 -37.453 -27.235 73.201 1 82.84 ? CMC HEM 1305 C 1 
HETATM 27 C CAC HEM . . . J 10 -35.115 -29.335 72.691 1 83 ? CAC HEM 1305 C 1 
HETATM 28 C CBC HEM . . . J 10 -35.763 -30.486 72.902 1 83.23 ? CBC HEM 1305 C 1 
HETATM 29 C C1D HEM . . . J 10 -33.666 -28.654 68.446 1 82.45 ? C1D HEM 1305 C 1 
HETATM 30 C C2D HEM . . . J 10 -32.577 -29.399 67.856 1 82.25 ? C2D HEM 1305 C 1 
HETATM 31 C C3D HEM . . . J 10 -32.356 -28.782 66.47 1 82.23 ? C3D HEM 1305 C 1 
HETATM 32 C C4D HEM . . . J 10 -33.343 -27.73 66.361 1 82.51 ? C4D HEM 1305 C 1 
HETATM 33 C CMD HEM . . . J 10 -31.795 -30.571 68.489 1 82.28 ? CMD HEM 1305 C 1 
HETATM 34 C CAD HEM . . . J 10 -31.308 -29.213 65.419 1 82.3 ? CAD HEM 1305 C 1 
HETATM 35 C CBD HEM . . . J 10 -30.26 -28.131 65.176 1 82.32 ? CBD HEM 1305 C 1 
HETATM 36 C CGD HEM . . . J 10 -30.092 -27.887 63.695 1 82.45 ? CGD HEM 1305 C 1 
HETATM 37 O O1D HEM . . . J 10 -30.544 -28.719 62.862 1 82.2 ? O1D HEM 1305 C 1 
HETATM 38 O O2D HEM . . . J 10 -29.494 -26.842 63.339 1 82.73 ? O2D HEM 1305 C 1 
HETATM 39 N NA HEM . . . J 10 -35.584 -25.729 65.88 1 83.09 ? NA HEM 1305 C 1 
HETATM 40 N NB HEM . . . J 10 -37.479 -25.338 68.04 1 83.16 ? NB HEM 1305 C 1 
HETATM 41 N NC HEM . . . J 10 -35.947 -27.14 69.728 1 83.03 ? NC HEM 1305 C 1 
HETATM 42 N ND HEM . . . J 10 -34.084 -27.69 67.537 1 82.68 ? ND HEM 1305 C 1 
HETATM 43 FE FE HEM . . . J 10 -35.812 -26.516 67.78 1 82.93 ? FE HEM 1305 C 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#