data_3AED
#
_model_server_result.job_id            Qcb9ykG6ViYj6GAGRCpsvQ 
_model_server_result.datetime_utc      '2025-01-10 12:51:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3aed 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":700}' 
#
_entry.id    3AED 
#
_exptl.entry_id    3AED 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3AED 
_cell.length_a            71.523 
_cell.length_b            84.074 
_cell.length_c            295.087 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3AED 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? 
metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? 
metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 H FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc6 B SG CYS 161 B CYS 161 1_555 H FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc7 B SG CYS 164 B CYS 164 1_555 H FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc8 B SG CYS 168 B CYS 168 1_555 I FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? 
metalc ? metalc9 B SG CYS 215 B CYS 215 1_555 I FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? 
metalc ? metalc10 B SG CYS 221 B CYS 221 1_555 I FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? 
metalc ? metalc11 B SG CYS 225 B CYS 225 1_555 H FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? 
metalc ? metalc12 C NE2 HIS 98 C HIS 101 1_555 J FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc13 J FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 235 n n 
PA O2A FAD sing 236 n n 
PA O5B FAD sing 237 n n 
PA O3P FAD sing 238 n n 
O2A HOA2 FAD sing 239 n n 
O5B C5B FAD sing 240 n n 
C5B C4B FAD sing 241 n n 
C5B H51A FAD sing 242 n n 
C5B H52A FAD sing 243 n n 
C4B O4B FAD sing 244 n n 
C4B C3B FAD sing 245 n n 
C4B H4B FAD sing 246 n n 
O4B C1B FAD sing 247 n n 
C3B O3B FAD sing 248 n n 
C3B C2B FAD sing 249 n n 
C3B H3B FAD sing 250 n n 
O3B HO3A FAD sing 251 n n 
C2B O2B FAD sing 252 n n 
C2B C1B FAD sing 253 n n 
C2B H2B FAD sing 254 n n 
O2B HO2A FAD sing 255 n n 
C1B N9A FAD sing 256 n n 
C1B H1B FAD sing 257 n n 
N9A C8A FAD sing 258 n y 
N9A C4A FAD sing 259 n y 
C8A N7A FAD doub 260 n y 
C8A H8A FAD sing 261 n n 
N7A C5A FAD sing 262 n y 
C5A C6A FAD sing 263 n y 
C5A C4A FAD doub 264 n y 
C6A N6A FAD sing 265 n n 
C6A N1A FAD doub 266 n y 
N6A H61A FAD sing 267 n n 
N6A H62A FAD sing 268 n n 
N1A C2A FAD sing 269 n y 
C2A N3A FAD doub 270 n y 
C2A H2A FAD sing 271 n n 
N3A C4A FAD sing 272 n y 
N1 C2 FAD sing 273 n n 
N1 C10 FAD doub 274 n n 
C2 O2 FAD doub 275 n n 
C2 N3 FAD sing 276 n n 
N3 C4 FAD sing 277 n n 
N3 HN3 FAD sing 278 n n 
C4 O4 FAD doub 279 n n 
C4 C4X FAD sing 280 n n 
C4X N5 FAD doub 281 n n 
C4X C10 FAD sing 282 n n 
N5 C5X FAD sing 283 n n 
C5X C6 FAD doub 284 n y 
C5X C9A FAD sing 285 n y 
C6 C7 FAD sing 286 n y 
C6 H6 FAD sing 287 n n 
C7 C7M FAD sing 288 n n 
C7 C8 FAD doub 289 n y 
C7M HM71 FAD sing 290 n n 
C7M HM72 FAD sing 291 n n 
C7M HM73 FAD sing 292 n n 
C8 C8M FAD sing 293 n n 
C8 C9 FAD sing 294 n y 
C8M HM81 FAD sing 295 n n 
C8M HM82 FAD sing 296 n n 
C8M HM83 FAD sing 297 n n 
C9 C9A FAD doub 298 n y 
C9 H9 FAD sing 299 n n 
C9A N10 FAD sing 300 n n 
N10 C10 FAD sing 301 n n 
N10 C1' FAD sing 302 n n 
C1' C2' FAD sing 303 n n 
C1' "H1'1" FAD sing 304 n n 
C1' "H1'2" FAD sing 305 n n 
C2' O2' FAD sing 306 n n 
C2' C3' FAD sing 307 n n 
C2' H2' FAD sing 308 n n 
O2' HO2' FAD sing 309 n n 
C3' O3' FAD sing 310 n n 
C3' C4' FAD sing 311 n n 
C3' H3' FAD sing 312 n n 
O3' HO3' FAD sing 313 n n 
C4' O4' FAD sing 314 n n 
C4' C5' FAD sing 315 n n 
C4' H4' FAD sing 316 n n 
O4' HO4' FAD sing 317 n n 
C5' O5' FAD sing 318 n n 
C5' "H5'1" FAD sing 319 n n 
C5' "H5'2" FAD sing 320 n n 
O5' P FAD sing 321 n n 
P O1P FAD doub 322 n n 
P O2P FAD sing 323 n n 
P O3P FAD sing 324 n n 
O2P HOP2 FAD sing 325 n n 
#
_atom_sites.entry_id                     3AED 
_atom_sites.fract_transf_matrix[1][1]    0.013982 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011894 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003389 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 FAD A 1 700 700 FAD FAD . 
F 6 MLI A 1 701 701 MLI MLI . 
G 7 FES B 1 302 302 FES FES . 
H 8 SF4 B 1 303 303 SF4 SF4 . 
I 9 F3S B 1 304 304 F3S F3S . 
J 10 HEM C 1 1305 1305 HEM HEM . 
K 11 BOL C 1 1201 1201 BOL BOL . 
L 12 EPH D 1 1306 1306 EPH EPH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . E 5 -12.677 -16.269 22.734 1 78.55 ? PA FAD 700 A 1 
HETATM 2 O O1A FAD . . . E 5 -11.547 -15.314 23.051 1 78.74 ? O1A FAD 700 A 1 
HETATM 3 O O2A FAD . . . E 5 -13.978 -15.718 23.245 1 78.52 ? O2A FAD 700 A 1 
HETATM 4 O O5B FAD . . . E 5 -12.352 -17.702 23.385 1 78.31 ? O5B FAD 700 A 1 
HETATM 5 C C5B FAD . . . E 5 -11.048 -18.214 23.247 1 78.27 ? C5B FAD 700 A 1 
HETATM 6 C C4B FAD . . . E 5 -10.998 -19.672 23.67 1 78.17 ? C4B FAD 700 A 1 
HETATM 7 O O4B FAD . . . E 5 -9.883 -20.301 23.065 1 78.12 ? O4B FAD 700 A 1 
HETATM 8 C C3B FAD . . . E 5 -10.829 -19.792 25.174 1 78.07 ? C3B FAD 700 A 1 
HETATM 9 O O3B FAD . . . E 5 -11.797 -20.691 25.651 1 77.96 ? O3B FAD 700 A 1 
HETATM 10 C C2B FAD . . . E 5 -9.436 -20.352 25.378 1 77.97 ? C2B FAD 700 A 1 
HETATM 11 O O2B FAD . . . E 5 -9.401 -21.326 26.395 1 78.22 ? O2B FAD 700 A 1 
HETATM 12 C C1B FAD . . . E 5 -9.103 -20.974 24.034 1 77.75 ? C1B FAD 700 A 1 
HETATM 13 N N9A FAD . . . E 5 -7.663 -20.859 23.751 1 77.27 ? N9A FAD 700 A 1 
HETATM 14 C C8A FAD . . . E 5 -6.958 -19.736 23.398 1 77.2 ? C8A FAD 700 A 1 
HETATM 15 N N7A FAD . . . E 5 -5.66 -20.079 23.237 1 77.08 ? N7A FAD 700 A 1 
HETATM 16 C C5A FAD . . . E 5 -5.529 -21.404 23.482 1 77.19 ? C5A FAD 700 A 1 
HETATM 17 C C6A FAD . . . E 5 -4.431 -22.265 23.468 1 77.25 ? C6A FAD 700 A 1 
HETATM 18 N N6A FAD . . . E 5 -3.217 -21.767 23.676 1 77.25 ? N6A FAD 700 A 1 
HETATM 19 N N1A FAD . . . E 5 -4.633 -23.6 23.767 1 77.25 ? N1A FAD 700 A 1 
HETATM 20 C C2A FAD . . . E 5 -5.89 -24.079 24.087 1 77.05 ? C2A FAD 700 A 1 
HETATM 21 N N3A FAD . . . E 5 -6.966 -23.215 24.105 1 76.85 ? N3A FAD 700 A 1 
HETATM 22 C C4A FAD . . . E 5 -6.786 -21.903 23.808 1 77.07 ? C4A FAD 700 A 1 
HETATM 23 N N1 FAD . . . E 5 -18.927 -8.958 19.832 1 82.54 ? N1 FAD 700 A 1 
HETATM 24 C C2 FAD . . . E 5 -20.281 -8.882 19.568 1 82.69 ? C2 FAD 700 A 1 
HETATM 25 O O2 FAD . . . E 5 -20.723 -9.341 18.516 1 82.89 ? O2 FAD 700 A 1 
HETATM 26 N N3 FAD . . . E 5 -21.127 -8.298 20.492 1 82.63 ? N3 FAD 700 A 1 
HETATM 27 C C4 FAD . . . E 5 -20.614 -7.791 21.674 1 82.55 ? C4 FAD 700 A 1 
HETATM 28 O O4 FAD . . . E 5 -21.379 -7.275 22.483 1 82.53 ? O4 FAD 700 A 1 
HETATM 29 C C4X FAD . . . E 5 -19.244 -7.865 21.943 1 82.34 ? C4X FAD 700 A 1 
HETATM 30 N N5 FAD . . . E 5 -18.714 -7.358 23.121 1 82.26 ? N5 FAD 700 A 1 
HETATM 31 C C5X FAD . . . E 5 -17.356 -7.44 23.374 1 82.08 ? C5X FAD 700 A 1 
HETATM 32 C C6 FAD . . . E 5 -16.826 -6.936 24.563 1 82.3 ? C6 FAD 700 A 1 
HETATM 33 C C7 FAD . . . E 5 -15.454 -7.016 24.816 1 82.35 ? C7 FAD 700 A 1 
HETATM 34 C C7M FAD . . . E 5 -14.906 -6.46 26.103 1 82.35 ? C7M FAD 700 A 1 
HETATM 35 C C8 FAD . . . E 5 -14.612 -7.61 23.869 1 82.22 ? C8 FAD 700 A 1 
HETATM 36 C C8M FAD . . . E 5 -13.131 -7.711 24.076 1 82.06 ? C8M FAD 700 A 1 
HETATM 37 C C9 FAD . . . E 5 -15.143 -8.115 22.689 1 81.99 ? C9 FAD 700 A 1 
HETATM 38 C C9A FAD . . . E 5 -16.511 -8.031 22.437 1 81.77 ? C9A FAD 700 A 1 
HETATM 39 N N10 FAD . . . E 5 -17.033 -8.527 21.257 1 81.48 ? N10 FAD 700 A 1 
HETATM 40 C C10 FAD . . . E 5 -18.398 -8.453 21.008 1 82.08 ? C10 FAD 700 A 1 
HETATM 41 C C1' FAD . . . E 5 -16.121 -9.188 20.263 1 80.63 ? C1' FAD 700 A 1 
HETATM 42 C C2' FAD . . . E 5 -16.361 -10.694 20.413 1 79.67 ? C2' FAD 700 A 1 
HETATM 43 O O2' FAD . . . E 5 -16.885 -10.966 21.698 1 79.54 ? O2' FAD 700 A 1 
HETATM 44 C C3' FAD . . . E 5 -15.128 -11.563 20.2 1 79.14 ? C3' FAD 700 A 1 
HETATM 45 O O3' FAD . . . E 5 -14.579 -11.304 18.929 1 79.09 ? O3' FAD 700 A 1 
HETATM 46 C C4' FAD . . . E 5 -15.52 -13.035 20.279 1 78.68 ? C4' FAD 700 A 1 
HETATM 47 O O4' FAD . . . E 5 -16.296 -13.268 21.434 1 78.4 ? O4' FAD 700 A 1 
HETATM 48 C C5' FAD . . . E 5 -14.323 -13.974 20.314 1 78.52 ? C5' FAD 700 A 1 
HETATM 49 O O5' FAD . . . E 5 -14.813 -15.258 20.618 1 78.3 ? O5' FAD 700 A 1 
HETATM 50 P P FAD . . . E 5 -14.016 -16.593 20.216 1 78.4 ? P FAD 700 A 1 
HETATM 51 O O1P FAD . . . E 5 -14.869 -17.802 20.529 1 78.3 ? O1P FAD 700 A 1 
HETATM 52 O O2P FAD . . . E 5 -13.623 -16.572 18.755 1 78.17 ? O2P FAD 700 A 1 
HETATM 53 O O3P FAD . . . E 5 -12.696 -16.57 21.146 1 78.6 ? O3P FAD 700 A 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           53 
#