data_3AEE # _model_server_result.job_id HSpOpWCLgAGNTeISY1eubA _model_server_result.datetime_utc '2024-11-24 13:02:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3aee # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1201}' # _entry.id 3AEE # _exptl.entry_id 3AEE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 366.237 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[(2S,4S,5R)-5,6-DICHLORO-2,4-DIMETHYL-1-OXOHEXYL]-4-HYDROXY-5,6-DIMETHOXY-2(1H)-PYRIDINONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AEE _cell.length_a 70.751 _cell.length_b 83.841 _cell.length_c 293.735 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AEE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 F FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 F FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 F FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 F FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 H FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc6 B SG CYS 168 B CYS 168 1_555 G FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc7 B SG CYS 215 B CYS 215 1_555 G FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc8 B SG CYS 221 B CYS 221 1_555 G FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc9 B SG CYS 225 B CYS 225 1_555 H FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc10 C NE2 HIS 98 C HIS 101 1_555 I FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc11 I FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? # _chem_comp.formula 'C15 H21 Cl2 N O5' _chem_comp.formula_weight 366.237 _chem_comp.id AT5 _chem_comp.mon_nstd_flag . _chem_comp.name 3-[(2S,4S,5R)-5,6-DICHLORO-2,4-DIMETHYL-1-OXOHEXYL]-4-HYDROXY-5,6-DIMETHOXY-2(1H)-PYRIDINONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ATPENIN A5;AA5' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C7 AT5 doub 70 n n C7 C8 AT5 sing 71 n n C7 C6 AT5 sing 72 n n C8 C11 AT5 sing 73 n n C8 C10 AT5 sing 74 n n C8 H8 AT5 sing 75 n n C11 C12 AT5 sing 76 n n C11 H111 AT5 sing 77 n n C11 H112 AT5 sing 78 n n C12 C17 AT5 sing 79 n n C12 C13 AT5 sing 80 n n C12 H12 AT5 sing 81 n n C17 H171 AT5 sing 82 n n C17 H172 AT5 sing 83 n n C17 H173 AT5 sing 84 n n C13 CL12 AT5 sing 85 n n C13 C14 AT5 sing 86 n n C13 H13 AT5 sing 87 n n C14 CL16 AT5 sing 88 n n C14 H141 AT5 sing 89 n n C14 H142 AT5 sing 90 n n C10 H101 AT5 sing 91 n n C10 H102 AT5 sing 92 n n C10 H103 AT5 sing 93 n n C6 C5 AT5 sing 94 n y C6 C1 AT5 doub 95 n y C5 N4 AT5 sing 96 n y C5 O4 AT5 doub 97 n n N4 C3 AT5 sing 98 n y N4 HN4 AT5 sing 99 n n C3 C2 AT5 doub 100 n y C3 O3 AT5 sing 101 n n C2 C1 AT5 sing 102 n y C2 O2 AT5 sing 103 n n C1 O1 AT5 sing 104 n n O1 HO1 AT5 sing 105 n n O2 CM2 AT5 sing 106 n n CM2 HM21 AT5 sing 107 n n CM2 HM22 AT5 sing 108 n n CM2 HM23 AT5 sing 109 n n O3 CM3 AT5 sing 110 n n CM3 HM31 AT5 sing 111 n n CM3 HM32 AT5 sing 112 n n CM3 HM33 AT5 sing 113 n n # _atom_sites.entry_id 3AEE _atom_sites.fract_transf_matrix[1][1] 0.014134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011927 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003404 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 FAD A 1 700 700 FAD FAD . F 6 FES B 1 302 302 FES FES . G 7 F3S B 1 304 304 F3S F3S . H 8 SF4 B 1 303 303 SF4 SF4 . I 9 HEM C 1 1305 1305 HEM HEM . J 10 AT5 C 1 1201 1201 AT5 AT5 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 AT5 . . . J 10 -20.043 -21.757 61.249 1 80.45 ? O5 AT5 1201 C 1 HETATM 2 C C7 AT5 . . . J 10 -20.074 -22.95 61.017 1 81.47 ? C7 AT5 1201 C 1 HETATM 3 C C8 AT5 . . . J 10 -18.77 -23.692 60.874 1 83.15 ? C8 AT5 1201 C 1 HETATM 4 C C11 AT5 . . . J 10 -18.027 -24.062 62.167 1 84.87 ? C11 AT5 1201 C 1 HETATM 5 C C12 AT5 . . . J 10 -18.652 -23.735 63.521 1 86.23 ? C12 AT5 1201 C 1 HETATM 6 C C17 AT5 . . . J 10 -17.546 -23.465 64.544 1 86.16 ? C17 AT5 1201 C 1 HETATM 7 C C13 AT5 . . . J 10 -19.564 -24.878 63.967 0.6 86.98 ? C13 AT5 1201 C 1 HETATM 8 CL CL12 AT5 . . . J 10 -18.608 -26.386 64.029 0.6 86.89 ? CL12 AT5 1201 C 1 HETATM 9 C C14 AT5 . . . J 10 -20.225 -24.635 65.322 0.6 87.54 ? C14 AT5 1201 C 1 HETATM 10 CL CL16 AT5 . . . J 10 -21.992 -24.875 65.155 0.6 88.65 ? CL16 AT5 1201 C 1 HETATM 11 C C10 AT5 . . . J 10 -17.845 -22.864 59.987 1 83.73 ? C10 AT5 1201 C 1 HETATM 12 C C6 AT5 . . . J 10 -21.406 -23.635 60.811 1 80.61 ? C6 AT5 1201 C 1 HETATM 13 C C5 AT5 . . . J 10 -22.669 -22.831 60.841 1 80.01 ? C5 AT5 1201 C 1 HETATM 14 N N4 AT5 . . . J 10 -23.888 -23.389 60.656 1 79.96 ? N4 AT5 1201 C 1 HETATM 15 C C3 AT5 . . . J 10 -24.069 -24.71 60.424 1 79.96 ? C3 AT5 1201 C 1 HETATM 16 C C2 AT5 . . . J 10 -22.906 -25.633 60.36 1 80.31 ? C2 AT5 1201 C 1 HETATM 17 C C1 AT5 . . . J 10 -21.532 -25.102 60.551 1 80.79 ? C1 AT5 1201 C 1 HETATM 18 O O1 AT5 . . . J 10 -20.46 -25.951 60.49 1 80.62 ? O1 AT5 1201 C 1 HETATM 19 O O2 AT5 . . . J 10 -23.108 -26.958 60.11 1 80.73 ? O2 AT5 1201 C 1 HETATM 20 C CM2 AT5 . . . J 10 -23.197 -27.374 58.747 1 81.03 ? CM2 AT5 1201 C 1 HETATM 21 O O3 AT5 . . . J 10 -25.328 -25.221 60.236 1 79.68 ? O3 AT5 1201 C 1 HETATM 22 C CM3 AT5 . . . J 10 -26.484 -24.581 60.77 1 79.82 ? CM3 AT5 1201 C 1 HETATM 23 O O4 AT5 . . . J 10 -22.623 -21.494 61.069 1 79.85 ? O4 AT5 1201 C 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 731 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #