data_3AEF
#
_model_server_result.job_id            xi6StrN9EDDAAQqYtod2pg 
_model_server_result.datetime_utc      '2024-11-27 22:12:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3aef 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1305}' 
#
_entry.id    3AEF 
#
_exptl.entry_id    3AEF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3AEF 
_cell.length_a            71.222 
_cell.length_b            84.209 
_cell.length_c            293.319 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3AEF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      9 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? 
metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 F FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 F FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 F FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 F FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 G FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc6 B SG CYS 161 B CYS 161 1_555 G FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? 
metalc ? metalc7 B SG CYS 164 B CYS 164 1_555 G FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc8 B SG CYS 168 B CYS 168 1_555 H FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc9 B SG CYS 215 B CYS 215 1_555 H FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc10 B SG CYS 221 B CYS 221 1_555 H FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc11 B SG CYS 225 B CYS 225 1_555 G FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc12 C NE2 HIS 98 C HIS 101 1_555 I FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc13 I FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 349 n n 
CHA C4D HEM doub 350 n n 
CHA HHA HEM sing 351 n n 
CHB C4A HEM sing 352 n n 
CHB C1B HEM doub 353 n n 
CHB HHB HEM sing 354 n n 
CHC C4B HEM sing 355 n n 
CHC C1C HEM doub 356 n n 
CHC HHC HEM sing 357 n n 
CHD C4C HEM doub 358 n n 
CHD C1D HEM sing 359 n n 
CHD HHD HEM sing 360 n n 
C1A C2A HEM doub 361 n y 
C1A NA HEM sing 362 n y 
C2A C3A HEM sing 363 n y 
C2A CAA HEM sing 364 n n 
C3A C4A HEM doub 365 n y 
C3A CMA HEM sing 366 n n 
C4A NA HEM sing 367 n y 
CMA HMA HEM sing 368 n n 
CMA HMAA HEM sing 369 n n 
CMA HMAB HEM sing 370 n n 
CAA CBA HEM sing 371 n n 
CAA HAA HEM sing 372 n n 
CAA HAAA HEM sing 373 n n 
CBA CGA HEM sing 374 n n 
CBA HBA HEM sing 375 n n 
CBA HBAA HEM sing 376 n n 
CGA O1A HEM doub 377 n n 
CGA O2A HEM sing 378 n n 
C1B C2B HEM sing 379 n n 
C1B NB HEM sing 380 n n 
C2B C3B HEM doub 381 n n 
C2B CMB HEM sing 382 n n 
C3B C4B HEM sing 383 n n 
C3B CAB HEM sing 384 n n 
C4B NB HEM doub 385 n n 
CMB HMB HEM sing 386 n n 
CMB HMBA HEM sing 387 n n 
CMB HMBB HEM sing 388 n n 
CAB CBB HEM doub 389 n n 
CAB HAB HEM sing 390 n n 
CBB HBB HEM sing 391 n n 
CBB HBBA HEM sing 392 n n 
C1C C2C HEM sing 393 n y 
C1C NC HEM sing 394 n y 
C2C C3C HEM doub 395 n y 
C2C CMC HEM sing 396 n n 
C3C C4C HEM sing 397 n y 
C3C CAC HEM sing 398 n n 
C4C NC HEM sing 399 n y 
CMC HMC HEM sing 400 n n 
CMC HMCA HEM sing 401 n n 
CMC HMCB HEM sing 402 n n 
CAC CBC HEM doub 403 n n 
CAC HAC HEM sing 404 n n 
CBC HBC HEM sing 405 n n 
CBC HBCA HEM sing 406 n n 
C1D C2D HEM sing 407 n n 
C1D ND HEM doub 408 n n 
C2D C3D HEM doub 409 n n 
C2D CMD HEM sing 410 n n 
C3D C4D HEM sing 411 n n 
C3D CAD HEM sing 412 n n 
C4D ND HEM sing 413 n n 
CMD HMD HEM sing 414 n n 
CMD HMDA HEM sing 415 n n 
CMD HMDB HEM sing 416 n n 
CAD CBD HEM sing 417 n n 
CAD HAD HEM sing 418 n n 
CAD HADA HEM sing 419 n n 
CBD CGD HEM sing 420 n n 
CBD HBD HEM sing 421 n n 
CBD HBDA HEM sing 422 n n 
CGD O1D HEM doub 423 n n 
CGD O2D HEM sing 424 n n 
O2A H2A HEM sing 425 n n 
O2D H2D HEM sing 426 n n 
FE NA HEM sing 427 n n 
FE NB HEM sing 428 n n 
FE NC HEM sing 429 n n 
FE ND HEM sing 430 n n 
#
_atom_sites.entry_id                     3AEF 
_atom_sites.fract_transf_matrix[1][1]    0.014041 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011875 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003409 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 FAD A 1 700 700 FAD FAD . 
F 6 FES B 1 302 302 FES FES . 
G 7 SF4 B 1 303 303 SF4 SF4 . 
H 8 F3S B 1 304 304 F3S F3S . 
I 9 HEM C 1 1305 1305 HEM HEM . 
J 10 EPH D 1 1306 1306 EPH EPH . 
K 11 HOH A 1 623 2 HOH HOH . 
K 11 HOH A 2 624 3 HOH HOH . 
L 11 HOH B 1 253 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . I 9 -33.309 -27.159 64.712 1 43.14 ? CHA HEM 1305 C 1 
HETATM 2 C CHB HEM . . . I 9 -37.391 -24.677 65.446 1 43.92 ? CHB HEM 1305 C 1 
HETATM 3 C CHC HEM . . . I 9 -37.25 -25.695 70.157 1 42.65 ? CHC HEM 1305 C 1 
HETATM 4 C CHD HEM . . . I 9 -34.052 -29.148 69.028 1 43 ? CHD HEM 1305 C 1 
HETATM 5 C C1A HEM . . . I 9 -34.436 -26.406 64.486 1 44.32 ? C1A HEM 1305 C 1 
HETATM 6 C C2A HEM . . . I 9 -34.891 -25.899 63.196 1 45.95 ? C2A HEM 1305 C 1 
HETATM 7 C C3A HEM . . . I 9 -36.023 -25.204 63.412 1 44.47 ? C3A HEM 1305 C 1 
HETATM 8 C C4A HEM . . . I 9 -36.307 -25.259 64.834 1 44.07 ? C4A HEM 1305 C 1 
HETATM 9 C CMA HEM . . . I 9 -36.905 -24.477 62.376 1 43.11 ? CMA HEM 1305 C 1 
HETATM 10 C CAA HEM . . . I 9 -34.176 -26.135 61.837 1 48.72 ? CAA HEM 1305 C 1 
HETATM 11 C CBA HEM . . . I 9 -32.788 -25.488 61.87 1 51.75 ? CBA HEM 1305 C 1 
HETATM 12 C CGA HEM . . . I 9 -32.119 -25.501 60.515 1 53.72 ? CGA HEM 1305 C 1 
HETATM 13 O O1A HEM . . . I 9 -32.82 -25.348 59.465 1 53.21 ? O1A HEM 1305 C 1 
HETATM 14 O O2A HEM . . . I 9 -30.862 -25.656 60.507 1 54.82 ? O2A HEM 1305 C 1 
HETATM 15 C C1B HEM . . . I 9 -37.662 -24.656 66.794 1 43.19 ? C1B HEM 1305 C 1 
HETATM 16 C C2B HEM . . . I 9 -38.634 -23.791 67.436 1 42.85 ? C2B HEM 1305 C 1 
HETATM 17 C C3B HEM . . . I 9 -38.6 -24.069 68.743 1 43.64 ? C3B HEM 1305 C 1 
HETATM 18 C C4B HEM . . . I 9 -37.609 -25.11 68.97 1 43.18 ? C4B HEM 1305 C 1 
HETATM 19 C CMB HEM . . . I 9 -39.537 -22.755 66.72 1 40.98 ? CMB HEM 1305 C 1 
HETATM 20 C CAB HEM . . . I 9 -39.473 -23.401 69.821 1 44.98 ? CAB HEM 1305 C 1 
HETATM 21 C CBB HEM . . . I 9 -40.728 -23.834 69.961 1 46.01 ? CBB HEM 1305 C 1 
HETATM 22 C C1C HEM . . . I 9 -36.412 -26.787 70.248 1 43.09 ? C1C HEM 1305 C 1 
HETATM 23 C C2C HEM . . . I 9 -36.183 -27.63 71.423 1 43.58 ? C2C HEM 1305 C 1 
HETATM 24 C C3C HEM . . . I 9 -35.294 -28.575 71.067 1 44.44 ? C3C HEM 1305 C 1 
HETATM 25 C C4C HEM . . . I 9 -34.942 -28.356 69.689 1 43.29 ? C4C HEM 1305 C 1 
HETATM 26 C CMC HEM . . . I 9 -36.837 -27.471 72.814 1 41.56 ? CMC HEM 1305 C 1 
HETATM 27 C CAC HEM . . . I 9 -34.68 -29.73 71.895 1 44.73 ? CAC HEM 1305 C 1 
HETATM 28 C CBC HEM . . . I 9 -35.361 -30.306 72.887 1 46.5 ? CBC HEM 1305 C 1 
HETATM 29 C C1D HEM . . . I 9 -33.467 -28.899 67.828 1 42.01 ? C1D HEM 1305 C 1 
HETATM 30 C C2D HEM . . . I 9 -32.3 -29.568 67.316 1 41.82 ? C2D HEM 1305 C 1 
HETATM 31 C C3D HEM . . . I 9 -32.056 -28.933 65.948 1 41.59 ? C3D HEM 1305 C 1 
HETATM 32 C C4D HEM . . . I 9 -33.113 -27.967 65.797 1 41.99 ? C4D HEM 1305 C 1 
HETATM 33 C CMD HEM . . . I 9 -31.475 -30.684 68 1 41.84 ? CMD HEM 1305 C 1 
HETATM 34 C CAD HEM . . . I 9 -30.927 -29.29 64.958 1 41.28 ? CAD HEM 1305 C 1 
HETATM 35 C CBD HEM . . . I 9 -29.821 -28.253 64.978 1 41.93 ? CBD HEM 1305 C 1 
HETATM 36 C CGD HEM . . . I 9 -29.471 -27.983 63.547 1 43.83 ? CGD HEM 1305 C 1 
HETATM 37 O O1D HEM . . . I 9 -29.887 -28.805 62.674 1 43.43 ? O1D HEM 1305 C 1 
HETATM 38 O O2D HEM . . . I 9 -28.794 -26.941 63.286 1 44.55 ? O2D HEM 1305 C 1 
HETATM 39 N NA HEM . . . I 9 -35.324 -26 65.463 1 43.22 ? NA HEM 1305 C 1 
HETATM 40 N NB HEM . . . I 9 -37.054 -25.445 67.755 1 42.94 ? NB HEM 1305 C 1 
HETATM 41 N NC HEM . . . I 9 -35.631 -27.266 69.208 1 42.35 ? NC HEM 1305 C 1 
HETATM 42 N ND HEM . . . I 9 -33.912 -27.967 66.929 1 42.2 ? ND HEM 1305 C 1 
HETATM 43 FE FE HEM . . . I 9 -35.491 -26.674 67.384 1 42.17 ? FE HEM 1305 C 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           353 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           43 
#