data_3AEF # _model_server_result.job_id XOl9CKC6AlSDowCMUkE75w _model_server_result.datetime_utc '2024-11-27 22:00:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3aef # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1306}' # _entry.id 3AEF # _exptl.entry_id 3AEF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 709.933 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AEF _cell.length_a 71.222 _cell.length_b 84.209 _cell.length_c 293.319 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AEF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 F FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 F FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 F FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 F FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 G FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc6 B SG CYS 161 B CYS 161 1_555 G FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc7 B SG CYS 164 B CYS 164 1_555 G FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc8 B SG CYS 168 B CYS 168 1_555 H FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc9 B SG CYS 215 B CYS 215 1_555 H FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc10 B SG CYS 221 B CYS 221 1_555 H FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc11 B SG CYS 225 B CYS 225 1_555 G FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc12 C NE2 HIS 98 C HIS 101 1_555 I FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc13 I FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? # _chem_comp.formula 'C39 H68 N O8 P' _chem_comp.formula_weight 709.933 _chem_comp.id EPH _chem_comp.mon_nstd_flag . _chem_comp.name L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 EPH sing 83 n n C1 O2 EPH sing 84 n n C1 H11 EPH sing 85 n n C1 H12A EPH sing 86 n n C2 C37 EPH sing 87 n n C2 O1 EPH sing 88 n n C2 H2 EPH sing 89 n n C4 O2 EPH sing 90 n n C4 O4 EPH doub 91 n n C4 C18 EPH sing 92 n n C18 C19 EPH sing 93 n n C18 H181 EPH sing 94 n n C18 H182 EPH sing 95 n n C19 C20 EPH sing 96 n n C19 H191 EPH sing 97 n n C19 H192 EPH sing 98 n n C20 C21 EPH sing 99 n n C20 H201 EPH sing 100 n n C20 H202 EPH sing 101 n n C21 C22 EPH sing 102 n n C21 H211 EPH sing 103 n n C21 H212 EPH sing 104 n n C22 C23 EPH sing 105 n n C22 H221 EPH sing 106 n n C22 H222 EPH sing 107 n n C23 C24 EPH sing 108 n n C23 H231 EPH sing 109 n n C23 H232 EPH sing 110 n n C24 C25 EPH doub 111 e n C24 H24 EPH sing 112 n n C25 C26 EPH sing 113 n n C25 H25 EPH sing 114 n n C26 C27 EPH sing 115 n n C26 H261 EPH sing 116 n n C26 H262 EPH sing 117 n n C27 C28 EPH sing 118 n n C27 H271 EPH sing 119 n n C27 H272 EPH sing 120 n n C28 C29 EPH doub 121 e n C28 H28 EPH sing 122 n n C29 C30 EPH sing 123 n n C29 H29 EPH sing 124 n n C30 C31 EPH sing 125 n n C30 H301 EPH sing 126 n n C30 H302 EPH sing 127 n n C31 C32 EPH sing 128 n n C31 H311 EPH sing 129 n n C31 H312 EPH sing 130 n n C32 C33 EPH doub 131 e n C32 H32 EPH sing 132 n n C33 C34 EPH sing 133 n n C33 H33 EPH sing 134 n n C34 H341 EPH sing 135 n n C34 H342 EPH sing 136 n n C34 H343 EPH sing 137 n n C37 O5 EPH sing 138 n n C37 H371 EPH sing 139 n n C37 H372 EPH sing 140 n n O5 P1 EPH sing 141 n n C3 O1 EPH sing 142 n n C3 O3 EPH doub 143 n n C3 C5 EPH sing 144 n n C5 C6 EPH sing 145 n n C5 H51 EPH sing 146 n n C5 H52 EPH sing 147 n n C6 C7 EPH sing 148 n n C6 H61 EPH sing 149 n n C6 H62 EPH sing 150 n n C7 C8 EPH sing 151 n n C7 H71 EPH sing 152 n n C7 H72 EPH sing 153 n n C8 C9 EPH sing 154 n n C8 H81 EPH sing 155 n n C8 H82 EPH sing 156 n n C9 C10 EPH sing 157 n n C9 H91 EPH sing 158 n n C9 H92 EPH sing 159 n n C10 C11 EPH sing 160 n n C10 H101 EPH sing 161 n n C10 H102 EPH sing 162 n n C11 C12 EPH sing 163 n n C11 H111 EPH sing 164 n n C11 H112 EPH sing 165 n n C12 C13 EPH doub 166 e n C12 H12 EPH sing 167 n n C13 C14 EPH sing 168 n n C13 H13 EPH sing 169 n n C14 C15 EPH sing 170 n n C14 H141 EPH sing 171 n n C14 H142 EPH sing 172 n n C15 C16 EPH doub 173 e n C15 H15 EPH sing 174 n n C16 C17 EPH sing 175 n n C16 H16 EPH sing 176 n n C17 C35 EPH sing 177 n n C17 H171 EPH sing 178 n n C17 H172 EPH sing 179 n n C35 C36 EPH sing 180 n n C35 H351 EPH sing 181 n n C35 H352 EPH sing 182 n n C36 H361 EPH sing 183 n n C36 H362 EPH sing 184 n n C36 H363 EPH sing 185 n n P1 O6 EPH sing 186 n n P1 O7 EPH doub 187 n n P1 O8 EPH sing 188 n n O6 HO6 EPH sing 189 n n O8 C38 EPH sing 190 n n C38 C39 EPH sing 191 n n C38 H381 EPH sing 192 n n C38 H382 EPH sing 193 n n C39 N1 EPH sing 194 n n C39 H391 EPH sing 195 n n C39 H392 EPH sing 196 n n N1 HN11 EPH sing 197 n n N1 HN12 EPH sing 198 n n # _atom_sites.entry_id 3AEF _atom_sites.fract_transf_matrix[1][1] 0.014041 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003409 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 FAD A 1 700 700 FAD FAD . F 6 FES B 1 302 302 FES FES . G 7 SF4 B 1 303 303 SF4 SF4 . H 8 F3S B 1 304 304 F3S F3S . I 9 HEM C 1 1305 1305 HEM HEM . J 10 EPH D 1 1306 1306 EPH EPH . K 11 HOH A 1 623 2 HOH HOH . K 11 HOH A 2 624 3 HOH HOH . L 11 HOH B 1 253 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EPH . . . J 10 -45.228 -20.807 84.67 1 82.15 ? C1 EPH 1306 D 1 HETATM 2 C C2 EPH . . . J 10 -45.802 -22.123 85.159 1 83.71 ? C2 EPH 1306 D 1 HETATM 3 C C4 EPH . . . J 10 -42.779 -20.879 84.305 1 78.75 ? C4 EPH 1306 D 1 HETATM 4 O O2 EPH . . . J 10 -44.127 -21.079 83.81 1 80.77 ? O2 EPH 1306 D 1 HETATM 5 O O4 EPH . . . J 10 -42.597 -21.063 85.497 1 78.38 ? O4 EPH 1306 D 1 HETATM 6 C C18 EPH . . . J 10 -41.653 -20.452 83.38 1 76.56 ? C18 EPH 1306 D 1 HETATM 7 C C19 EPH . . . J 10 -41.696 -21.223 82.063 1 74.21 ? C19 EPH 1306 D 1 HETATM 8 C C20 EPH . . . J 10 -40.337 -21.234 81.372 1 72.71 ? C20 EPH 1306 D 1 HETATM 9 C C21 EPH . . . J 10 -40.119 -22.516 80.57 1 71.15 ? C21 EPH 1306 D 1 HETATM 10 C C22 EPH . . . J 10 -38.736 -23.113 80.822 1 69.85 ? C22 EPH 1306 D 1 HETATM 11 C C23 EPH . . . J 10 -38.789 -24.634 80.922 1 69.16 ? C23 EPH 1306 D 1 HETATM 12 C C24 EPH . . . J 10 -37.597 -25.167 81.709 1 69 ? C24 EPH 1306 D 1 HETATM 13 C C25 EPH . . . J 10 -37.932 -26.447 82.477 1 68.37 ? C25 EPH 1306 D 1 HETATM 14 C C26 EPH . . . J 10 -37.223 -27.659 81.868 1 68 ? C26 EPH 1306 D 1 HETATM 15 C C27 EPH . . . J 10 -37.181 -28.866 82.81 1 66.98 ? C27 EPH 1306 D 1 HETATM 16 C C28 EPH . . . J 10 -38.204 -29.934 82.422 1 65.93 ? C28 EPH 1306 D 1 HETATM 17 C C29 EPH . . . J 10 -37.695 -30.812 81.281 1 65.44 ? C29 EPH 1306 D 1 HETATM 18 C C30 EPH . . . J 10 -38.633 -30.777 80.08 1 64.98 ? C30 EPH 1306 D 1 HETATM 19 C C31 EPH . . . J 10 -38.283 -31.859 79.081 1 64.48 ? C31 EPH 1306 D 1 HETATM 20 C C37 EPH . . . J 10 -46.177 -21.942 86.626 1 88.18 ? C37 EPH 1306 D 1 HETATM 21 O O5 EPH . . . J 10 -47.593 -21.956 86.8 1 93.43 ? O5 EPH 1306 D 1 HETATM 22 C C3 EPH . . . J 10 -46.797 -23.747 83.646 1 78.79 ? C3 EPH 1306 D 1 HETATM 23 O O1 EPH . . . J 10 -46.927 -22.467 84.347 1 80.99 ? O1 EPH 1306 D 1 HETATM 24 O O3 EPH . . . J 10 -47.748 -24.513 83.691 1 79.14 ? O3 EPH 1306 D 1 HETATM 25 C C5 EPH . . . J 10 -45.531 -24.13 82.889 1 75.95 ? C5 EPH 1306 D 1 HETATM 26 C C6 EPH . . . J 10 -45.801 -24.672 81.485 1 72.35 ? C6 EPH 1306 D 1 HETATM 27 C C7 EPH . . . J 10 -44.646 -24.332 80.544 1 69.77 ? C7 EPH 1306 D 1 HETATM 28 C C8 EPH . . . J 10 -44.364 -25.434 79.523 1 67.27 ? C8 EPH 1306 D 1 HETATM 29 C C9 EPH . . . J 10 -42.978 -25.282 78.896 1 65.05 ? C9 EPH 1306 D 1 HETATM 30 C C10 EPH . . . J 10 -42.141 -26.559 78.973 1 62.65 ? C10 EPH 1306 D 1 HETATM 31 C C11 EPH . . . J 10 -41.204 -26.681 77.77 1 60.68 ? C11 EPH 1306 D 1 HETATM 32 C C12 EPH . . . J 10 -39.985 -27.556 78.058 1 59.2 ? C12 EPH 1306 D 1 HETATM 33 C C13 EPH . . . J 10 -38.753 -27.1 77.276 1 57.79 ? C13 EPH 1306 D 1 HETATM 34 C C14 EPH . . . J 10 -37.618 -28.123 77.345 1 56.8 ? C14 EPH 1306 D 1 HETATM 35 C C15 EPH . . . J 10 -36.243 -27.472 77.5 1 55.6 ? C15 EPH 1306 D 1 HETATM 36 C C16 EPH . . . J 10 -35.288 -28.34 78.324 1 54.44 ? C16 EPH 1306 D 1 HETATM 37 C C17 EPH . . . J 10 -34.133 -27.531 78.89 1 52.96 ? C17 EPH 1306 D 1 HETATM 38 P P1 EPH . . . J 10 -48.481 -20.603 86.856 1 97.05 ? P1 EPH 1306 D 1 HETATM 39 O O6 EPH . . . J 10 -47.726 -19.415 86.284 1 97.06 ? O6 EPH 1306 D 1 HETATM 40 O O7 EPH . . . J 10 -49.814 -20.972 86.231 1 96.97 ? O7 EPH 1306 D 1 HETATM 41 O O8 EPH . . . J 10 -48.657 -20.359 88.457 1 96.96 ? O8 EPH 1306 D 1 HETATM 42 C C38 EPH . . . J 10 -47.664 -19.727 89.274 1 96.14 ? C38 EPH 1306 D 1 HETATM 43 C C39 EPH . . . J 10 -48.303 -18.642 90.135 1 95.81 ? C39 EPH 1306 D 1 HETATM 44 N N1 EPH . . . J 10 -48.541 -17.464 89.321 1 95.73 ? N1 EPH 1306 D 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #