data_3AEF # _model_server_result.job_id hmLJQs_6whW6EOU-qEWI3g _model_server_result.datetime_utc '2024-11-27 22:10:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3aef # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":304}' # _entry.id 3AEF # _exptl.entry_id 3AEF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 295.795 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE3-S4 CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AEF _cell.length_a 71.222 _cell.length_b 84.209 _cell.length_c 293.319 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AEF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 F FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 F FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 F FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 F FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 G FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc6 B SG CYS 161 B CYS 161 1_555 G FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc7 B SG CYS 164 B CYS 164 1_555 G FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc8 B SG CYS 168 B CYS 168 1_555 H FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc9 B SG CYS 215 B CYS 215 1_555 H FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc10 B SG CYS 221 B CYS 221 1_555 H FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc11 B SG CYS 225 B CYS 225 1_555 G FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc12 C NE2 HIS 98 C HIS 101 1_555 I FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc13 I FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? # _chem_comp.formula 'Fe3 S4' _chem_comp.formula_weight 295.795 _chem_comp.id F3S _chem_comp.mon_nstd_flag . _chem_comp.name 'FE3-S4 CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 F3S sing 199 n n FE1 S2 F3S sing 200 n n FE1 S3 F3S sing 201 n n FE3 S1 F3S sing 202 n n FE3 S3 F3S sing 203 n n FE3 S4 F3S sing 204 n n FE4 S2 F3S sing 205 n n FE4 S3 F3S sing 206 n n FE4 S4 F3S sing 207 n n # _atom_sites.entry_id 3AEF _atom_sites.fract_transf_matrix[1][1] 0.014041 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003409 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 FAD A 1 700 700 FAD FAD . F 6 FES B 1 302 302 FES FES . G 7 SF4 B 1 303 303 SF4 SF4 . H 8 F3S B 1 304 304 F3S F3S . I 9 HEM C 1 1305 1305 HEM HEM . J 10 EPH D 1 1306 1306 EPH EPH . K 11 HOH A 1 623 2 HOH HOH . K 11 HOH A 2 624 3 HOH HOH . L 11 HOH B 1 253 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 F3S . . . H 8 -27.184 -22.892 52.323 1 35.99 ? FE1 F3S 304 B 1 HETATM 2 FE FE3 F3S . . . H 8 -25.749 -20.569 51.496 1 37.06 ? FE3 F3S 304 B 1 HETATM 3 FE FE4 F3S . . . H 8 -25.128 -22.399 52.719 1 40.97 ? FE4 F3S 304 B 1 HETATM 4 S S1 F3S . . . H 8 -27.73 -20.707 52.483 1 35.16 ? S1 F3S 304 B 1 HETATM 5 S S2 F3S . . . H 8 -26.073 -23.817 54.011 1 37.17 ? S2 F3S 304 B 1 HETATM 6 S S3 F3S . . . H 8 -25.739 -22.652 50.658 1 35.78 ? S3 F3S 304 B 1 HETATM 7 S S4 F3S . . . H 8 -23.892 -20.601 52.732 1 37.96 ? S4 F3S 304 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #