data_3AEF
#
_model_server_result.job_id            ZUwhrSYdY0HSjRuCA-nQZQ 
_model_server_result.datetime_utc      '2024-11-24 04:43:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3aef 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":700}' 
#
_entry.id    3AEF 
#
_exptl.entry_id    3AEF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3AEF 
_cell.length_a            71.222 
_cell.length_b            84.209 
_cell.length_c            293.319 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3AEF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? 
metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 F FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 F FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 F FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 F FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 G FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc6 B SG CYS 161 B CYS 161 1_555 G FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? 
metalc ? metalc7 B SG CYS 164 B CYS 164 1_555 G FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc8 B SG CYS 168 B CYS 168 1_555 H FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc9 B SG CYS 215 B CYS 215 1_555 H FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc10 B SG CYS 221 B CYS 221 1_555 H FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc11 B SG CYS 225 B CYS 225 1_555 G FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc12 C NE2 HIS 98 C HIS 101 1_555 I FE HEM . C HEM 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc13 I FE HEM . C HEM 1305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 208 n n 
PA O2A FAD sing 209 n n 
PA O5B FAD sing 210 n n 
PA O3P FAD sing 211 n n 
O2A HOA2 FAD sing 212 n n 
O5B C5B FAD sing 213 n n 
C5B C4B FAD sing 214 n n 
C5B H51A FAD sing 215 n n 
C5B H52A FAD sing 216 n n 
C4B O4B FAD sing 217 n n 
C4B C3B FAD sing 218 n n 
C4B H4B FAD sing 219 n n 
O4B C1B FAD sing 220 n n 
C3B O3B FAD sing 221 n n 
C3B C2B FAD sing 222 n n 
C3B H3B FAD sing 223 n n 
O3B HO3A FAD sing 224 n n 
C2B O2B FAD sing 225 n n 
C2B C1B FAD sing 226 n n 
C2B H2B FAD sing 227 n n 
O2B HO2A FAD sing 228 n n 
C1B N9A FAD sing 229 n n 
C1B H1B FAD sing 230 n n 
N9A C8A FAD sing 231 n y 
N9A C4A FAD sing 232 n y 
C8A N7A FAD doub 233 n y 
C8A H8A FAD sing 234 n n 
N7A C5A FAD sing 235 n y 
C5A C6A FAD sing 236 n y 
C5A C4A FAD doub 237 n y 
C6A N6A FAD sing 238 n n 
C6A N1A FAD doub 239 n y 
N6A H61A FAD sing 240 n n 
N6A H62A FAD sing 241 n n 
N1A C2A FAD sing 242 n y 
C2A N3A FAD doub 243 n y 
C2A H2A FAD sing 244 n n 
N3A C4A FAD sing 245 n y 
N1 C2 FAD sing 246 n n 
N1 C10 FAD doub 247 n n 
C2 O2 FAD doub 248 n n 
C2 N3 FAD sing 249 n n 
N3 C4 FAD sing 250 n n 
N3 HN3 FAD sing 251 n n 
C4 O4 FAD doub 252 n n 
C4 C4X FAD sing 253 n n 
C4X N5 FAD doub 254 n n 
C4X C10 FAD sing 255 n n 
N5 C5X FAD sing 256 n n 
C5X C6 FAD doub 257 n y 
C5X C9A FAD sing 258 n y 
C6 C7 FAD sing 259 n y 
C6 H6 FAD sing 260 n n 
C7 C7M FAD sing 261 n n 
C7 C8 FAD doub 262 n y 
C7M HM71 FAD sing 263 n n 
C7M HM72 FAD sing 264 n n 
C7M HM73 FAD sing 265 n n 
C8 C8M FAD sing 266 n n 
C8 C9 FAD sing 267 n y 
C8M HM81 FAD sing 268 n n 
C8M HM82 FAD sing 269 n n 
C8M HM83 FAD sing 270 n n 
C9 C9A FAD doub 271 n y 
C9 H9 FAD sing 272 n n 
C9A N10 FAD sing 273 n n 
N10 C10 FAD sing 274 n n 
N10 C1' FAD sing 275 n n 
C1' C2' FAD sing 276 n n 
C1' "H1'1" FAD sing 277 n n 
C1' "H1'2" FAD sing 278 n n 
C2' O2' FAD sing 279 n n 
C2' C3' FAD sing 280 n n 
C2' H2' FAD sing 281 n n 
O2' HO2' FAD sing 282 n n 
C3' O3' FAD sing 283 n n 
C3' C4' FAD sing 284 n n 
C3' H3' FAD sing 285 n n 
O3' HO3' FAD sing 286 n n 
C4' O4' FAD sing 287 n n 
C4' C5' FAD sing 288 n n 
C4' H4' FAD sing 289 n n 
O4' HO4' FAD sing 290 n n 
C5' O5' FAD sing 291 n n 
C5' "H5'1" FAD sing 292 n n 
C5' "H5'2" FAD sing 293 n n 
O5' P FAD sing 294 n n 
P O1P FAD doub 295 n n 
P O2P FAD sing 296 n n 
P O3P FAD sing 297 n n 
O2P HOP2 FAD sing 298 n n 
#
_atom_sites.entry_id                     3AEF 
_atom_sites.fract_transf_matrix[1][1]    0.014041 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011875 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003409 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 FAD A 1 700 700 FAD FAD . 
F 6 FES B 1 302 302 FES FES . 
G 7 SF4 B 1 303 303 SF4 SF4 . 
H 8 F3S B 1 304 304 F3S F3S . 
I 9 HEM C 1 1305 1305 HEM HEM . 
J 10 EPH D 1 1306 1306 EPH EPH . 
K 11 HOH A 1 623 2 HOH HOH . 
K 11 HOH A 2 624 3 HOH HOH . 
L 11 HOH B 1 253 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . E 5 -12.228 -16.446 22.503 1 35.2 ? PA FAD 700 A 1 
HETATM 2 O O1A FAD . . . E 5 -13.63 -16.39 23.013 1 35.42 ? O1A FAD 700 A 1 
HETATM 3 O O2A FAD . . . E 5 -11.511 -15.156 22.812 1 36.83 ? O2A FAD 700 A 1 
HETATM 4 O O5B FAD . . . E 5 -11.478 -17.632 23.289 1 37.3 ? O5B FAD 700 A 1 
HETATM 5 C C5B FAD . . . E 5 -10.295 -18.245 22.808 1 38.92 ? C5B FAD 700 A 1 
HETATM 6 C C4B FAD . . . E 5 -10.304 -19.738 23.134 1 40.46 ? C4B FAD 700 A 1 
HETATM 7 O O4B FAD . . . E 5 -9.13 -20.371 22.664 1 41.82 ? O4B FAD 700 A 1 
HETATM 8 C C3B FAD . . . E 5 -10.368 -20.027 24.622 1 41.1 ? C3B FAD 700 A 1 
HETATM 9 O O3B FAD . . . E 5 -11.325 -21.043 24.819 1 40.59 ? O3B FAD 700 A 1 
HETATM 10 C C2B FAD . . . E 5 -8.996 -20.548 24.974 1 41.83 ? C2B FAD 700 A 1 
HETATM 11 O O2B FAD . . . E 5 -9.072 -21.501 26.008 1 42.72 ? O2B FAD 700 A 1 
HETATM 12 C C1B FAD . . . E 5 -8.515 -21.155 23.671 1 41.43 ? C1B FAD 700 A 1 
HETATM 13 N N9A FAD . . . E 5 -7.051 -21.091 23.514 1 42.14 ? N9A FAD 700 A 1 
HETATM 14 C C8A FAD . . . E 5 -6.306 -19.968 23.221 1 43.41 ? C8A FAD 700 A 1 
HETATM 15 N N7A FAD . . . E 5 -5 -20.308 23.151 1 42.94 ? N7A FAD 700 A 1 
HETATM 16 C C5A FAD . . . E 5 -4.906 -21.635 23.388 1 42.53 ? C5A FAD 700 A 1 
HETATM 17 C C6A FAD . . . E 5 -3.815 -22.488 23.434 1 42.89 ? C6A FAD 700 A 1 
HETATM 18 N N6A FAD . . . E 5 -2.609 -21.96 23.605 1 43.5 ? N6A FAD 700 A 1 
HETATM 19 N N1A FAD . . . E 5 -4.015 -23.827 23.71 1 43.41 ? N1A FAD 700 A 1 
HETATM 20 C C2A FAD . . . E 5 -5.287 -24.321 23.93 1 43.12 ? C2A FAD 700 A 1 
HETATM 21 N N3A FAD . . . E 5 -6.364 -23.456 23.884 1 42.83 ? N3A FAD 700 A 1 
HETATM 22 C C4A FAD . . . E 5 -6.18 -22.14 23.616 1 42.03 ? C4A FAD 700 A 1 
HETATM 23 N N1 FAD . . . E 5 -18.357 -9.165 19.661 1 41.02 ? N1 FAD 700 A 1 
HETATM 24 C C2 FAD . . . E 5 -19.692 -9.077 19.285 1 41.83 ? C2 FAD 700 A 1 
HETATM 25 O O2 FAD . . . E 5 -20.078 -9.5 18.179 1 41.4 ? O2 FAD 700 A 1 
HETATM 26 N N3 FAD . . . E 5 -20.59 -8.507 20.163 1 41.77 ? N3 FAD 700 A 1 
HETATM 27 C C4 FAD . . . E 5 -20.164 -8.04 21.387 1 41.23 ? C4 FAD 700 A 1 
HETATM 28 O O4 FAD . . . E 5 -20.988 -7.544 22.152 1 42.17 ? O4 FAD 700 A 1 
HETATM 29 C C4X FAD . . . E 5 -18.821 -8.131 21.745 1 40.41 ? C4X FAD 700 A 1 
HETATM 30 N N5 FAD . . . E 5 -18.382 -7.666 22.963 1 40.14 ? N5 FAD 700 A 1 
HETATM 31 C C5X FAD . . . E 5 -17.056 -7.763 23.336 1 38.77 ? C5X FAD 700 A 1 
HETATM 32 C C6 FAD . . . E 5 -16.669 -7.291 24.586 1 39.17 ? C6 FAD 700 A 1 
HETATM 33 C C7 FAD . . . E 5 -15.34 -7.375 24.978 1 38.91 ? C7 FAD 700 A 1 
HETATM 34 C C7M FAD . . . E 5 -14.927 -6.858 26.332 1 38.15 ? C7M FAD 700 A 1 
HETATM 35 C C8 FAD . . . E 5 -14.41 -7.935 24.099 1 38.13 ? C8 FAD 700 A 1 
HETATM 36 C C8M FAD . . . E 5 -12.973 -8.011 24.511 1 37.08 ? C8M FAD 700 A 1 
HETATM 37 C C9 FAD . . . E 5 -14.8 -8.41 22.852 1 36.52 ? C9 FAD 700 A 1 
HETATM 38 C C9A FAD . . . E 5 -16.132 -8.323 22.475 1 37.59 ? C9A FAD 700 A 1 
HETATM 39 N N10 FAD . . . E 5 -16.562 -8.78 21.246 1 39.27 ? N10 FAD 700 A 1 
HETATM 40 C C10 FAD . . . E 5 -17.904 -8.697 20.881 1 39.75 ? C10 FAD 700 A 1 
HETATM 41 C C1' FAD . . . E 5 -15.564 -9.424 20.327 1 40.09 ? C1' FAD 700 A 1 
HETATM 42 C C2' FAD . . . E 5 -15.749 -10.935 20.551 1 40.2 ? C2' FAD 700 A 1 
HETATM 43 O O2' FAD . . . E 5 -16.024 -11.228 21.915 1 40.82 ? O2' FAD 700 A 1 
HETATM 44 C C3' FAD . . . E 5 -14.587 -11.8 20.096 1 40.01 ? C3' FAD 700 A 1 
HETATM 45 O O3' FAD . . . E 5 -14.271 -11.456 18.768 1 40.4 ? O3' FAD 700 A 1 
HETATM 46 C C4' FAD . . . E 5 -15.001 -13.275 20.138 1 39.9 ? C4' FAD 700 A 1 
HETATM 47 O O4' FAD . . . E 5 -15.658 -13.599 21.348 1 38.81 ? O4' FAD 700 A 1 
HETATM 48 C C5' FAD . . . E 5 -13.828 -14.231 19.966 1 38.78 ? C5' FAD 700 A 1 
HETATM 49 O O5' FAD . . . E 5 -14.311 -15.485 20.379 1 37.26 ? O5' FAD 700 A 1 
HETATM 50 P P FAD . . . E 5 -13.549 -16.828 19.984 1 35.86 ? P FAD 700 A 1 
HETATM 51 O O1P FAD . . . E 5 -14.399 -18.036 20.315 1 36.28 ? O1P FAD 700 A 1 
HETATM 52 O O2P FAD . . . E 5 -13.256 -16.807 18.497 1 36.23 ? O2P FAD 700 A 1 
HETATM 53 O O3P FAD . . . E 5 -12.223 -16.79 20.92 1 35.07 ? O3P FAD 700 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           53 
#