data_3AEX # _model_server_result.job_id bSPk9j2JgLJTTbNolFQPcQ _model_server_result.datetime_utc '2025-01-02 20:27:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3aex # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 3AEX # _exptl.entry_id 3AEX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 317.189 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3E)-4-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}-2-oxobut-3-enoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3AEX _cell.length_a 115.252 _cell.length_b 115.252 _cell.length_c 99.709 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AEX _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C11 H12 N O8 P' _chem_comp.formula_weight 317.189 _chem_comp.id AN7 _chem_comp.mon_nstd_flag . _chem_comp.name '(3E)-4-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}-2-oxobut-3-enoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAQ AN7 sing 13 n n OAB CAO AN7 doub 14 n n OAC CAP AN7 doub 15 n n OAD PAU AN7 doub 16 n n OAE CAO AN7 sing 17 n n OAF CAR AN7 sing 18 n n OAG PAU AN7 sing 19 n n OAH PAU AN7 sing 20 n n CAI CAJ AN7 doub 21 n n CAI CAP AN7 sing 22 n n CAJ CAT AN7 sing 23 n n CAK NAM AN7 doub 24 n y CAK CAS AN7 sing 25 n y CAL OAN AN7 sing 26 n n CAL CAS AN7 sing 27 n n NAM CAQ AN7 sing 28 e y OAN PAU AN7 sing 29 n n CAO CAP AN7 sing 30 n n CAQ CAR AN7 doub 31 n y CAR CAT AN7 sing 32 n y CAS CAT AN7 doub 33 n y CAA HAA AN7 sing 34 n n CAA HAAA AN7 sing 35 n n CAA HAAB AN7 sing 36 n n OAE HOAE AN7 sing 37 n n OAF HOAF AN7 sing 38 n n OAG HOAG AN7 sing 39 n n OAH HOAH AN7 sing 40 n n CAI HAI AN7 sing 41 n n CAJ HAJ AN7 sing 42 n n CAK HAK AN7 sing 43 n n CAL HAL AN7 sing 44 n n CAL HALA AN7 sing 45 n n # _atom_sites.entry_id 3AEX _atom_sites.fract_transf_matrix[1][1] 0.008677 _atom_sites.fract_transf_matrix[1][2] 0.005009 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010019 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010029 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AN7 A 1 1001 1001 AN7 ANA . D 3 PO4 A 1 6265 6265 PO4 PO4 . E 2 AN7 B 1 1002 1002 AN7 ANA . F 3 PO4 B 1 6267 6267 PO4 PO4 . G 4 HOH A 1 352 1 HOH HOH . G 4 HOH A 2 353 2 HOH HOH . G 4 HOH A 3 354 3 HOH HOH . G 4 HOH A 4 355 4 HOH HOH . G 4 HOH A 5 356 5 HOH HOH . G 4 HOH A 6 357 6 HOH HOH . G 4 HOH A 7 358 7 HOH HOH . G 4 HOH A 8 359 8 HOH HOH . G 4 HOH A 9 360 9 HOH HOH . G 4 HOH A 10 361 10 HOH HOH . G 4 HOH A 11 362 11 HOH HOH . G 4 HOH A 12 363 13 HOH HOH . G 4 HOH A 13 364 14 HOH HOH . G 4 HOH A 14 365 15 HOH HOH . G 4 HOH A 15 366 16 HOH HOH . G 4 HOH A 16 367 17 HOH HOH . G 4 HOH A 17 368 18 HOH HOH . G 4 HOH A 18 369 19 HOH HOH . G 4 HOH A 19 370 20 HOH HOH . G 4 HOH A 20 371 22 HOH HOH . G 4 HOH A 21 372 27 HOH HOH . G 4 HOH A 22 373 31 HOH HOH . G 4 HOH A 23 374 32 HOH HOH . G 4 HOH A 24 375 33 HOH HOH . G 4 HOH A 25 376 34 HOH HOH . G 4 HOH A 26 377 40 HOH HOH . G 4 HOH A 27 378 41 HOH HOH . G 4 HOH A 28 379 44 HOH HOH . G 4 HOH A 29 380 48 HOH HOH . G 4 HOH A 30 381 51 HOH HOH . G 4 HOH A 31 382 52 HOH HOH . G 4 HOH A 32 383 56 HOH HOH . G 4 HOH A 33 384 58 HOH HOH . G 4 HOH A 34 385 61 HOH HOH . G 4 HOH A 35 386 63 HOH HOH . G 4 HOH A 36 387 66 HOH HOH . G 4 HOH A 37 388 70 HOH HOH . G 4 HOH A 38 389 73 HOH HOH . G 4 HOH A 39 390 75 HOH HOH . G 4 HOH A 40 391 79 HOH HOH . G 4 HOH A 41 392 80 HOH HOH . G 4 HOH A 42 393 86 HOH HOH . G 4 HOH A 43 394 89 HOH HOH . G 4 HOH A 44 395 91 HOH HOH . G 4 HOH A 45 396 92 HOH HOH . G 4 HOH A 46 397 93 HOH HOH . G 4 HOH A 47 398 94 HOH HOH . G 4 HOH A 48 399 95 HOH HOH . G 4 HOH A 49 400 96 HOH HOH . G 4 HOH A 50 401 98 HOH HOH . G 4 HOH A 51 402 104 HOH HOH . G 4 HOH A 52 403 105 HOH HOH . G 4 HOH A 53 404 106 HOH HOH . G 4 HOH A 54 405 107 HOH HOH . G 4 HOH A 55 406 108 HOH HOH . G 4 HOH A 56 407 109 HOH HOH . G 4 HOH A 57 408 114 HOH HOH . G 4 HOH A 58 409 118 HOH HOH . G 4 HOH A 59 410 119 HOH HOH . G 4 HOH A 60 411 120 HOH HOH . G 4 HOH A 61 412 121 HOH HOH . G 4 HOH A 62 413 124 HOH HOH . G 4 HOH A 63 414 127 HOH HOH . G 4 HOH A 64 415 128 HOH HOH . G 4 HOH A 65 416 129 HOH HOH . G 4 HOH A 66 417 133 HOH HOH . G 4 HOH A 67 418 135 HOH HOH . G 4 HOH A 68 419 142 HOH HOH . G 4 HOH A 69 420 143 HOH HOH . G 4 HOH A 70 421 146 HOH HOH . G 4 HOH A 71 422 150 HOH HOH . G 4 HOH A 72 423 151 HOH HOH . G 4 HOH A 73 424 155 HOH HOH . G 4 HOH A 74 425 157 HOH HOH . G 4 HOH A 75 426 160 HOH HOH . G 4 HOH A 76 427 161 HOH HOH . G 4 HOH A 77 428 162 HOH HOH . G 4 HOH A 78 429 167 HOH HOH . G 4 HOH A 79 430 168 HOH HOH . G 4 HOH A 80 431 170 HOH HOH . G 4 HOH A 81 432 172 HOH HOH . G 4 HOH A 82 433 173 HOH HOH . G 4 HOH A 83 434 175 HOH HOH . G 4 HOH A 84 435 176 HOH HOH . G 4 HOH A 85 436 177 HOH HOH . G 4 HOH A 86 437 181 HOH HOH . G 4 HOH A 87 438 182 HOH HOH . G 4 HOH A 88 439 183 HOH HOH . G 4 HOH A 89 440 185 HOH HOH . G 4 HOH A 90 441 186 HOH HOH . G 4 HOH A 91 442 187 HOH HOH . G 4 HOH A 92 443 188 HOH HOH . G 4 HOH A 93 444 191 HOH HOH . G 4 HOH A 94 445 193 HOH HOH . G 4 HOH A 95 446 195 HOH HOH . G 4 HOH A 96 447 201 HOH HOH . G 4 HOH A 97 448 203 HOH HOH . G 4 HOH A 98 449 204 HOH HOH . G 4 HOH A 99 450 205 HOH HOH . G 4 HOH A 100 451 206 HOH HOH . G 4 HOH A 101 452 207 HOH HOH . G 4 HOH A 102 453 208 HOH HOH . G 4 HOH A 103 454 209 HOH HOH . G 4 HOH A 104 455 211 HOH HOH . G 4 HOH A 105 456 212 HOH HOH . G 4 HOH A 106 457 213 HOH HOH . G 4 HOH A 107 458 214 HOH HOH . G 4 HOH A 108 459 216 HOH HOH . G 4 HOH A 109 460 218 HOH HOH . G 4 HOH A 110 461 221 HOH HOH . G 4 HOH A 111 462 223 HOH HOH . G 4 HOH A 112 463 224 HOH HOH . G 4 HOH A 113 464 228 HOH HOH . G 4 HOH A 114 465 231 HOH HOH . G 4 HOH A 115 466 234 HOH HOH . G 4 HOH A 116 467 235 HOH HOH . G 4 HOH A 117 468 238 HOH HOH . G 4 HOH A 118 469 242 HOH HOH . G 4 HOH A 119 470 245 HOH HOH . G 4 HOH A 120 471 246 HOH HOH . G 4 HOH A 121 472 248 HOH HOH . G 4 HOH A 122 473 249 HOH HOH . G 4 HOH A 123 474 253 HOH HOH . G 4 HOH A 124 475 254 HOH HOH . G 4 HOH A 125 476 260 HOH HOH . G 4 HOH A 126 477 261 HOH HOH . G 4 HOH A 127 478 262 HOH HOH . G 4 HOH A 128 479 267 HOH HOH . G 4 HOH A 129 480 272 HOH HOH . H 4 HOH B 1 352 21 HOH HOH . H 4 HOH B 2 353 23 HOH HOH . H 4 HOH B 3 354 24 HOH HOH . H 4 HOH B 4 355 25 HOH HOH . H 4 HOH B 5 356 26 HOH HOH . H 4 HOH B 6 357 28 HOH HOH . H 4 HOH B 7 358 29 HOH HOH . H 4 HOH B 8 359 30 HOH HOH . H 4 HOH B 9 360 35 HOH HOH . H 4 HOH B 10 361 36 HOH HOH . H 4 HOH B 11 362 37 HOH HOH . H 4 HOH B 12 363 38 HOH HOH . H 4 HOH B 13 364 39 HOH HOH . H 4 HOH B 14 365 42 HOH HOH . H 4 HOH B 15 366 43 HOH HOH . H 4 HOH B 16 367 45 HOH HOH . H 4 HOH B 17 368 46 HOH HOH . H 4 HOH B 18 369 47 HOH HOH . H 4 HOH B 19 370 49 HOH HOH . H 4 HOH B 20 371 50 HOH HOH . H 4 HOH B 21 372 53 HOH HOH . H 4 HOH B 22 373 54 HOH HOH . H 4 HOH B 23 374 55 HOH HOH . H 4 HOH B 24 375 57 HOH HOH . H 4 HOH B 25 376 59 HOH HOH . H 4 HOH B 26 377 60 HOH HOH . H 4 HOH B 27 378 62 HOH HOH . H 4 HOH B 28 379 64 HOH HOH . H 4 HOH B 29 380 65 HOH HOH . H 4 HOH B 30 381 67 HOH HOH . H 4 HOH B 31 382 68 HOH HOH . H 4 HOH B 32 383 69 HOH HOH . H 4 HOH B 33 384 71 HOH HOH . H 4 HOH B 34 385 72 HOH HOH . H 4 HOH B 35 386 74 HOH HOH . H 4 HOH B 36 387 76 HOH HOH . H 4 HOH B 37 388 77 HOH HOH . H 4 HOH B 38 389 78 HOH HOH . H 4 HOH B 39 390 81 HOH HOH . H 4 HOH B 40 391 82 HOH HOH . H 4 HOH B 41 392 83 HOH HOH . H 4 HOH B 42 393 84 HOH HOH . H 4 HOH B 43 394 85 HOH HOH . H 4 HOH B 44 395 87 HOH HOH . H 4 HOH B 45 396 88 HOH HOH . H 4 HOH B 46 397 90 HOH HOH . H 4 HOH B 47 398 97 HOH HOH . H 4 HOH B 48 399 99 HOH HOH . H 4 HOH B 49 400 100 HOH HOH . H 4 HOH B 50 401 101 HOH HOH . H 4 HOH B 51 402 102 HOH HOH . H 4 HOH B 52 403 103 HOH HOH . H 4 HOH B 53 404 110 HOH HOH . H 4 HOH B 54 405 111 HOH HOH . H 4 HOH B 55 406 112 HOH HOH . H 4 HOH B 56 407 113 HOH HOH . H 4 HOH B 57 408 115 HOH HOH . H 4 HOH B 58 409 116 HOH HOH . H 4 HOH B 59 410 117 HOH HOH . H 4 HOH B 60 411 122 HOH HOH . H 4 HOH B 61 412 125 HOH HOH . H 4 HOH B 62 413 126 HOH HOH . H 4 HOH B 63 414 131 HOH HOH . H 4 HOH B 64 415 132 HOH HOH . H 4 HOH B 65 416 134 HOH HOH . H 4 HOH B 66 417 136 HOH HOH . H 4 HOH B 67 418 138 HOH HOH . H 4 HOH B 68 419 139 HOH HOH . H 4 HOH B 69 420 140 HOH HOH . H 4 HOH B 70 421 144 HOH HOH . H 4 HOH B 71 422 145 HOH HOH . H 4 HOH B 72 423 147 HOH HOH . H 4 HOH B 73 424 149 HOH HOH . H 4 HOH B 74 425 156 HOH HOH . H 4 HOH B 75 426 159 HOH HOH . H 4 HOH B 76 427 164 HOH HOH . H 4 HOH B 77 428 165 HOH HOH . H 4 HOH B 78 429 166 HOH HOH . H 4 HOH B 79 430 169 HOH HOH . H 4 HOH B 80 431 171 HOH HOH . H 4 HOH B 81 432 174 HOH HOH . H 4 HOH B 82 433 178 HOH HOH . H 4 HOH B 83 434 179 HOH HOH . H 4 HOH B 84 435 180 HOH HOH . H 4 HOH B 85 436 184 HOH HOH . H 4 HOH B 86 437 189 HOH HOH . H 4 HOH B 87 438 190 HOH HOH . H 4 HOH B 88 439 192 HOH HOH . H 4 HOH B 89 440 194 HOH HOH . H 4 HOH B 90 441 196 HOH HOH . H 4 HOH B 91 442 198 HOH HOH . H 4 HOH B 92 443 199 HOH HOH . H 4 HOH B 93 444 200 HOH HOH . H 4 HOH B 94 445 202 HOH HOH . H 4 HOH B 95 446 210 HOH HOH . H 4 HOH B 96 447 215 HOH HOH . H 4 HOH B 97 448 217 HOH HOH . H 4 HOH B 98 449 219 HOH HOH . H 4 HOH B 99 450 220 HOH HOH . H 4 HOH B 100 451 222 HOH HOH . H 4 HOH B 101 452 225 HOH HOH . H 4 HOH B 102 453 226 HOH HOH . H 4 HOH B 103 454 227 HOH HOH . H 4 HOH B 104 455 230 HOH HOH . H 4 HOH B 105 456 232 HOH HOH . H 4 HOH B 106 457 233 HOH HOH . H 4 HOH B 107 458 236 HOH HOH . H 4 HOH B 108 459 237 HOH HOH . H 4 HOH B 109 460 240 HOH HOH . H 4 HOH B 110 461 241 HOH HOH . H 4 HOH B 111 462 243 HOH HOH . H 4 HOH B 112 463 244 HOH HOH . H 4 HOH B 113 464 250 HOH HOH . H 4 HOH B 114 465 251 HOH HOH . H 4 HOH B 115 466 252 HOH HOH . H 4 HOH B 116 467 255 HOH HOH . H 4 HOH B 117 468 256 HOH HOH . H 4 HOH B 118 469 258 HOH HOH . H 4 HOH B 119 470 259 HOH HOH . H 4 HOH B 120 471 264 HOH HOH . H 4 HOH B 121 472 265 HOH HOH . H 4 HOH B 122 473 266 HOH HOH . H 4 HOH B 123 474 270 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA AN7 . . . C 2 -62.013 0.631 -12.618 1 31.5 ? CAA AN7 1001 A 1 HETATM 2 O OAB AN7 . . . C 2 -65.297 -6.325 -17.218 1 43.04 ? OAB AN7 1001 A 1 HETATM 3 O OAC AN7 . . . C 2 -66.912 -4.677 -15.714 1 44.57 ? OAC AN7 1001 A 1 HETATM 4 O OAD AN7 . . . C 2 -69.009 -3.733 -12.938 1 36.03 ? OAD AN7 1001 A 1 HETATM 5 O OAE AN7 . . . C 2 -63.531 -5.192 -16.562 1 42.92 ? OAE AN7 1001 A 1 HETATM 6 O OAF AN7 . . . C 2 -62.87 -1.65 -14.188 1 33.02 ? OAF AN7 1001 A 1 HETATM 7 O OAG AN7 . . . C 2 -69.136 -3.941 -10.422 1 36.27 ? OAG AN7 1001 A 1 HETATM 8 O OAH AN7 . . . C 2 -70.503 -2.161 -11.653 1 35.97 ? OAH AN7 1001 A 1 HETATM 9 C CAI AN7 . . . C 2 -65.123 -3.434 -15.006 1 42.22 ? CAI AN7 1001 A 1 HETATM 10 C CAJ AN7 . . . C 2 -65.771 -2.518 -14.172 1 37.16 ? CAJ AN7 1001 A 1 HETATM 11 C CAK AN7 . . . C 2 -65.686 0.447 -11.884 1 33.58 ? CAK AN7 1001 A 1 HETATM 12 C CAL AN7 . . . C 2 -67.68 -0.889 -12.44 1 29.81 ? CAL AN7 1001 A 1 HETATM 13 N NAM AN7 . . . C 2 -64.395 0.788 -11.927 1 34.5 ? NAM AN7 1001 A 1 HETATM 14 O OAN AN7 . . . C 2 -67.93 -1.896 -11.452 1 32.47 ? OAN AN7 1001 A 1 HETATM 15 C CAO AN7 . . . C 2 -64.779 -5.402 -16.569 1 43.27 ? CAO AN7 1001 A 1 HETATM 16 C CAP AN7 . . . C 2 -65.705 -4.481 -15.732 1 43.12 ? CAP AN7 1001 A 1 HETATM 17 C CAQ AN7 . . . C 2 -63.46 0.117 -12.671 1 34.31 ? CAQ AN7 1001 A 1 HETATM 18 C CAR AN7 . . . C 2 -63.841 -1.015 -13.46 1 34.5 ? CAR AN7 1001 A 1 HETATM 19 C CAS AN7 . . . C 2 -66.172 -0.65 -12.622 1 34.33 ? CAS AN7 1001 A 1 HETATM 20 C CAT AN7 . . . C 2 -65.239 -1.414 -13.438 1 34.37 ? CAT AN7 1001 A 1 HETATM 21 P PAU AN7 . . . C 2 -69.114 -2.966 -11.681 1 32.04 ? PAU AN7 1001 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #