data_3AF1
#
_model_server_result.job_id            BD8gzpADm5dQ0xZTIEfgRA 
_model_server_result.datetime_utc      '2024-12-01 19:01:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3af1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":323}' 
#
_entry.id    3AF1 
#
_exptl.entry_id    3AF1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3AF1 
_cell.length_a            103.9 
_cell.length_b            103.9 
_cell.length_c            90.21 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3AF1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
? 5 M N N 
? 5 N N N 
? 5 O N N 
? 5 P N N 
? 5 Q N N 
? 5 R N N 
? 5 S N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 191 n n 
C1 C2 GOL sing 192 n n 
C1 H11 GOL sing 193 n n 
C1 H12 GOL sing 194 n n 
O1 HO1 GOL sing 195 n n 
C2 O2 GOL sing 196 n n 
C2 C3 GOL sing 197 n n 
C2 H2 GOL sing 198 n n 
O2 HO2 GOL sing 199 n n 
C3 O3 GOL sing 200 n n 
C3 H31 GOL sing 201 n n 
C3 H32 GOL sing 202 n n 
O3 HO3 GOL sing 203 n n 
#
_atom_sites.entry_id                     3AF1 
_atom_sites.fract_transf_matrix[1][1]    0.009625 
_atom_sites.fract_transf_matrix[1][2]    0.005557 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011114 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011085 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GDP A 1 313 313 GDP GDP . 
C 3 FLC A 1 314 314 FLC FLC . 
D 4 CL A 1 315 315 CL CL . 
E 4 CL A 1 316 316 CL CL . 
F 4 CL A 1 317 317 CL CL . 
G 5 GOL A 1 318 318 GOL GOL . 
H 5 GOL A 1 319 319 GOL GOL . 
I 5 GOL A 1 320 320 GOL GOL . 
J 5 GOL A 1 321 321 GOL GOL . 
K 5 GOL A 1 322 322 GOL GOL . 
L 5 GOL A 1 323 323 GOL GOL . 
M 5 GOL A 1 324 324 GOL GOL . 
N 5 GOL A 1 325 325 GOL GOL . 
O 5 GOL A 1 326 326 GOL GOL . 
P 5 GOL A 1 327 327 GOL GOL . 
Q 5 GOL A 1 328 328 GOL GOL . 
R 5 GOL A 1 329 329 GOL GOL . 
S 5 GOL A 1 330 330 GOL GOL . 
T 6 HOH A 1 331 331 HOH HOH . 
T 6 HOH A 2 332 332 HOH HOH . 
T 6 HOH A 3 333 333 HOH HOH . 
T 6 HOH A 4 334 334 HOH HOH . 
T 6 HOH A 5 335 335 HOH HOH . 
T 6 HOH A 6 336 336 HOH HOH . 
T 6 HOH A 7 337 337 HOH HOH . 
T 6 HOH A 8 338 338 HOH HOH . 
T 6 HOH A 9 339 339 HOH HOH . 
T 6 HOH A 10 340 340 HOH HOH . 
T 6 HOH A 11 341 341 HOH HOH . 
T 6 HOH A 12 342 342 HOH HOH . 
T 6 HOH A 13 343 343 HOH HOH . 
T 6 HOH A 14 344 344 HOH HOH . 
T 6 HOH A 15 345 345 HOH HOH . 
T 6 HOH A 16 346 346 HOH HOH . 
T 6 HOH A 17 347 347 HOH HOH . 
T 6 HOH A 18 348 348 HOH HOH . 
T 6 HOH A 19 349 349 HOH HOH . 
T 6 HOH A 20 350 350 HOH HOH . 
T 6 HOH A 21 351 351 HOH HOH . 
T 6 HOH A 22 352 352 HOH HOH . 
T 6 HOH A 23 353 353 HOH HOH . 
T 6 HOH A 24 354 354 HOH HOH . 
T 6 HOH A 25 355 355 HOH HOH . 
T 6 HOH A 26 356 356 HOH HOH . 
T 6 HOH A 27 357 357 HOH HOH . 
T 6 HOH A 28 358 358 HOH HOH . 
T 6 HOH A 29 359 359 HOH HOH . 
T 6 HOH A 30 360 360 HOH HOH . 
T 6 HOH A 31 361 361 HOH HOH . 
T 6 HOH A 32 362 362 HOH HOH . 
T 6 HOH A 33 363 363 HOH HOH . 
T 6 HOH A 34 364 364 HOH HOH . 
T 6 HOH A 35 365 365 HOH HOH . 
T 6 HOH A 36 366 366 HOH HOH . 
T 6 HOH A 37 367 367 HOH HOH . 
T 6 HOH A 38 368 368 HOH HOH . 
T 6 HOH A 39 369 369 HOH HOH . 
T 6 HOH A 40 370 370 HOH HOH . 
T 6 HOH A 41 371 371 HOH HOH . 
T 6 HOH A 42 372 372 HOH HOH . 
T 6 HOH A 43 373 373 HOH HOH . 
T 6 HOH A 44 374 374 HOH HOH . 
T 6 HOH A 45 375 375 HOH HOH . 
T 6 HOH A 46 376 376 HOH HOH . 
T 6 HOH A 47 377 377 HOH HOH . 
T 6 HOH A 48 378 378 HOH HOH . 
T 6 HOH A 49 379 379 HOH HOH . 
T 6 HOH A 50 380 380 HOH HOH . 
T 6 HOH A 51 381 381 HOH HOH . 
T 6 HOH A 52 382 382 HOH HOH . 
T 6 HOH A 53 383 383 HOH HOH . 
T 6 HOH A 54 384 384 HOH HOH . 
T 6 HOH A 55 385 385 HOH HOH . 
T 6 HOH A 56 386 386 HOH HOH . 
T 6 HOH A 57 387 387 HOH HOH . 
T 6 HOH A 58 388 388 HOH HOH . 
T 6 HOH A 59 389 389 HOH HOH . 
T 6 HOH A 60 390 390 HOH HOH . 
T 6 HOH A 61 391 391 HOH HOH . 
T 6 HOH A 62 392 392 HOH HOH . 
T 6 HOH A 63 393 393 HOH HOH . 
T 6 HOH A 64 394 394 HOH HOH . 
T 6 HOH A 65 395 395 HOH HOH . 
T 6 HOH A 66 396 396 HOH HOH . 
T 6 HOH A 67 397 397 HOH HOH . 
T 6 HOH A 68 398 398 HOH HOH . 
T 6 HOH A 69 399 399 HOH HOH . 
T 6 HOH A 70 400 400 HOH HOH . 
T 6 HOH A 71 401 401 HOH HOH . 
T 6 HOH A 72 402 402 HOH HOH . 
T 6 HOH A 73 403 403 HOH HOH . 
T 6 HOH A 74 404 404 HOH HOH . 
T 6 HOH A 75 405 405 HOH HOH . 
T 6 HOH A 76 406 406 HOH HOH . 
T 6 HOH A 77 407 407 HOH HOH . 
T 6 HOH A 78 408 408 HOH HOH . 
T 6 HOH A 79 409 409 HOH HOH . 
T 6 HOH A 80 410 410 HOH HOH . 
T 6 HOH A 81 411 411 HOH HOH . 
T 6 HOH A 82 412 412 HOH HOH . 
T 6 HOH A 83 413 413 HOH HOH . 
T 6 HOH A 84 414 414 HOH HOH . 
T 6 HOH A 85 415 415 HOH HOH . 
T 6 HOH A 86 416 416 HOH HOH . 
T 6 HOH A 87 417 417 HOH HOH . 
T 6 HOH A 88 418 418 HOH HOH . 
T 6 HOH A 89 419 419 HOH HOH . 
T 6 HOH A 90 420 420 HOH HOH . 
T 6 HOH A 91 421 421 HOH HOH . 
T 6 HOH A 92 422 422 HOH HOH . 
T 6 HOH A 93 423 423 HOH HOH . 
T 6 HOH A 94 424 424 HOH HOH . 
T 6 HOH A 95 425 425 HOH HOH . 
T 6 HOH A 96 426 426 HOH HOH . 
T 6 HOH A 97 427 427 HOH HOH . 
T 6 HOH A 98 428 428 HOH HOH . 
T 6 HOH A 99 429 429 HOH HOH . 
T 6 HOH A 100 430 430 HOH HOH . 
T 6 HOH A 101 431 431 HOH HOH . 
T 6 HOH A 102 432 432 HOH HOH . 
T 6 HOH A 103 433 433 HOH HOH . 
T 6 HOH A 104 434 434 HOH HOH . 
T 6 HOH A 105 435 435 HOH HOH . 
T 6 HOH A 106 436 436 HOH HOH . 
T 6 HOH A 107 437 437 HOH HOH . 
T 6 HOH A 108 438 438 HOH HOH . 
T 6 HOH A 109 439 439 HOH HOH . 
T 6 HOH A 110 440 440 HOH HOH . 
T 6 HOH A 111 441 441 HOH HOH . 
T 6 HOH A 112 442 442 HOH HOH . 
T 6 HOH A 113 443 443 HOH HOH . 
T 6 HOH A 114 444 444 HOH HOH . 
T 6 HOH A 115 445 445 HOH HOH . 
T 6 HOH A 116 446 446 HOH HOH . 
T 6 HOH A 117 447 447 HOH HOH . 
T 6 HOH A 118 448 448 HOH HOH . 
T 6 HOH A 119 449 449 HOH HOH . 
T 6 HOH A 120 450 450 HOH HOH . 
T 6 HOH A 121 451 451 HOH HOH . 
T 6 HOH A 122 452 452 HOH HOH . 
T 6 HOH A 123 453 453 HOH HOH . 
T 6 HOH A 124 454 454 HOH HOH . 
T 6 HOH A 125 455 455 HOH HOH . 
T 6 HOH A 126 456 456 HOH HOH . 
T 6 HOH A 127 457 457 HOH HOH . 
T 6 HOH A 128 458 458 HOH HOH . 
T 6 HOH A 129 459 459 HOH HOH . 
T 6 HOH A 130 460 460 HOH HOH . 
T 6 HOH A 131 461 461 HOH HOH . 
T 6 HOH A 132 462 462 HOH HOH . 
T 6 HOH A 133 463 463 HOH HOH . 
T 6 HOH A 134 464 464 HOH HOH . 
T 6 HOH A 135 465 465 HOH HOH . 
T 6 HOH A 136 466 466 HOH HOH . 
T 6 HOH A 137 467 467 HOH HOH . 
T 6 HOH A 138 468 468 HOH HOH . 
T 6 HOH A 139 469 469 HOH HOH . 
T 6 HOH A 140 470 470 HOH HOH . 
T 6 HOH A 141 471 471 HOH HOH . 
T 6 HOH A 142 472 472 HOH HOH . 
T 6 HOH A 143 473 473 HOH HOH . 
T 6 HOH A 144 474 474 HOH HOH . 
T 6 HOH A 145 475 475 HOH HOH . 
T 6 HOH A 146 476 476 HOH HOH . 
T 6 HOH A 147 477 477 HOH HOH . 
T 6 HOH A 148 478 478 HOH HOH . 
T 6 HOH A 149 479 479 HOH HOH . 
T 6 HOH A 150 480 480 HOH HOH . 
T 6 HOH A 151 481 481 HOH HOH . 
T 6 HOH A 152 482 482 HOH HOH . 
T 6 HOH A 153 483 483 HOH HOH . 
T 6 HOH A 154 484 484 HOH HOH . 
T 6 HOH A 155 485 485 HOH HOH . 
T 6 HOH A 156 486 486 HOH HOH . 
T 6 HOH A 157 487 487 HOH HOH . 
T 6 HOH A 158 488 488 HOH HOH . 
T 6 HOH A 159 489 489 HOH HOH . 
T 6 HOH A 160 490 490 HOH HOH . 
T 6 HOH A 161 491 491 HOH HOH . 
T 6 HOH A 162 492 492 HOH HOH . 
T 6 HOH A 163 493 493 HOH HOH . 
T 6 HOH A 164 494 494 HOH HOH . 
T 6 HOH A 165 495 495 HOH HOH . 
T 6 HOH A 166 496 496 HOH HOH . 
T 6 HOH A 167 497 497 HOH HOH . 
T 6 HOH A 168 498 498 HOH HOH . 
T 6 HOH A 169 499 499 HOH HOH . 
T 6 HOH A 170 500 500 HOH HOH . 
T 6 HOH A 171 501 501 HOH HOH . 
T 6 HOH A 172 502 502 HOH HOH . 
T 6 HOH A 173 503 503 HOH HOH . 
T 6 HOH A 174 504 504 HOH HOH . 
T 6 HOH A 175 505 505 HOH HOH . 
T 6 HOH A 176 506 506 HOH HOH . 
T 6 HOH A 177 507 507 HOH HOH . 
T 6 HOH A 178 508 508 HOH HOH . 
T 6 HOH A 179 509 509 HOH HOH . 
T 6 HOH A 180 510 510 HOH HOH . 
T 6 HOH A 181 511 511 HOH HOH . 
T 6 HOH A 182 512 512 HOH HOH . 
T 6 HOH A 183 513 513 HOH HOH . 
T 6 HOH A 184 514 514 HOH HOH . 
T 6 HOH A 185 515 515 HOH HOH . 
T 6 HOH A 186 516 516 HOH HOH . 
T 6 HOH A 187 517 517 HOH HOH . 
T 6 HOH A 188 518 518 HOH HOH . 
T 6 HOH A 189 519 519 HOH HOH . 
T 6 HOH A 190 520 520 HOH HOH . 
T 6 HOH A 191 521 521 HOH HOH . 
T 6 HOH A 192 522 522 HOH HOH . 
T 6 HOH A 193 523 523 HOH HOH . 
T 6 HOH A 194 524 524 HOH HOH . 
T 6 HOH A 195 525 525 HOH HOH . 
T 6 HOH A 196 526 526 HOH HOH . 
T 6 HOH A 197 527 527 HOH HOH . 
T 6 HOH A 198 528 528 HOH HOH . 
T 6 HOH A 199 529 529 HOH HOH . 
T 6 HOH A 200 530 530 HOH HOH . 
T 6 HOH A 201 531 531 HOH HOH . 
T 6 HOH A 202 532 532 HOH HOH . 
T 6 HOH A 203 533 533 HOH HOH . 
T 6 HOH A 204 534 534 HOH HOH . 
T 6 HOH A 205 535 535 HOH HOH . 
T 6 HOH A 206 536 536 HOH HOH . 
T 6 HOH A 207 537 537 HOH HOH . 
T 6 HOH A 208 538 538 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . L 5 19.543 32.117 -1.428 1 81.23 ? C1 GOL 323 A 1 
HETATM 2 O O1 GOL . . . L 5 19.702 30.835 -2 1 82.92 ? O1 GOL 323 A 1 
HETATM 3 C C2 GOL . . . L 5 19.737 33.223 -2.463 1 79.08 ? C2 GOL 323 A 1 
HETATM 4 O O2 GOL . . . L 5 20.985 33.056 -3.098 1 66.8 ? O2 GOL 323 A 1 
HETATM 5 C C3 GOL . . . L 5 19.683 34.6 -1.804 1 83.82 ? C3 GOL 323 A 1 
HETATM 6 O O3 GOL . . . L 5 18.371 34.953 -1.416 1 85.81 ? O3 GOL 323 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#