data_3AF4
#
_model_server_result.job_id            NbnBqCXBB-FdaO06VFRLfA 
_model_server_result.datetime_utc      '2024-10-11 15:28:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3af4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":324}' 
#
_entry.id    3AF4 
#
_exptl.entry_id    3AF4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3AF4 
_cell.length_a            103.4 
_cell.length_b            103.4 
_cell.length_c            91.34 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3AF4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 181 n n 
C1 C2 GOL sing 182 n n 
C1 H11 GOL sing 183 n n 
C1 H12 GOL sing 184 n n 
O1 HO1 GOL sing 185 n n 
C2 O2 GOL sing 186 n n 
C2 C3 GOL sing 187 n n 
C2 H2 GOL sing 188 n n 
O2 HO2 GOL sing 189 n n 
C3 O3 GOL sing 190 n n 
C3 H31 GOL sing 191 n n 
C3 H32 GOL sing 192 n n 
O3 HO3 GOL sing 193 n n 
#
_atom_sites.entry_id                     3AF4 
_atom_sites.fract_transf_matrix[1][1]    0.009671 
_atom_sites.fract_transf_matrix[1][2]    0.005584 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011167 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010948 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GCP A 1 313 313 GCP GCP . 
C 3 GOL A 1 314 314 GOL GOL . 
D 3 GOL A 1 315 315 GOL GOL . 
E 3 GOL A 1 316 316 GOL GOL . 
F 3 GOL A 1 317 317 GOL GOL . 
G 3 GOL A 1 318 318 GOL GOL . 
H 3 GOL A 1 319 319 GOL GOL . 
I 3 GOL A 1 320 320 GOL GOL . 
J 3 GOL A 1 321 321 GOL GOL . 
K 3 GOL A 1 322 322 GOL GOL . 
L 3 GOL A 1 323 323 GOL GOL . 
M 3 GOL A 1 324 324 GOL GOL . 
N 3 GOL A 1 325 325 GOL GOL . 
O 3 GOL A 1 326 326 GOL GOL . 
P 4 HOH A 1 327 327 HOH HOH . 
P 4 HOH A 2 328 328 HOH HOH . 
P 4 HOH A 3 329 329 HOH HOH . 
P 4 HOH A 4 330 330 HOH HOH . 
P 4 HOH A 5 331 331 HOH HOH . 
P 4 HOH A 6 332 332 HOH HOH . 
P 4 HOH A 7 333 333 HOH HOH . 
P 4 HOH A 8 334 334 HOH HOH . 
P 4 HOH A 9 335 335 HOH HOH . 
P 4 HOH A 10 336 336 HOH HOH . 
P 4 HOH A 11 337 337 HOH HOH . 
P 4 HOH A 12 338 338 HOH HOH . 
P 4 HOH A 13 339 339 HOH HOH . 
P 4 HOH A 14 340 340 HOH HOH . 
P 4 HOH A 15 341 341 HOH HOH . 
P 4 HOH A 16 342 342 HOH HOH . 
P 4 HOH A 17 343 343 HOH HOH . 
P 4 HOH A 18 344 344 HOH HOH . 
P 4 HOH A 19 345 345 HOH HOH . 
P 4 HOH A 20 346 346 HOH HOH . 
P 4 HOH A 21 347 347 HOH HOH . 
P 4 HOH A 22 348 348 HOH HOH . 
P 4 HOH A 23 349 349 HOH HOH . 
P 4 HOH A 24 350 350 HOH HOH . 
P 4 HOH A 25 351 351 HOH HOH . 
P 4 HOH A 26 352 352 HOH HOH . 
P 4 HOH A 27 353 353 HOH HOH . 
P 4 HOH A 28 354 354 HOH HOH . 
P 4 HOH A 29 355 355 HOH HOH . 
P 4 HOH A 30 356 356 HOH HOH . 
P 4 HOH A 31 357 357 HOH HOH . 
P 4 HOH A 32 358 358 HOH HOH . 
P 4 HOH A 33 359 359 HOH HOH . 
P 4 HOH A 34 360 360 HOH HOH . 
P 4 HOH A 35 361 361 HOH HOH . 
P 4 HOH A 36 362 362 HOH HOH . 
P 4 HOH A 37 363 363 HOH HOH . 
P 4 HOH A 38 364 364 HOH HOH . 
P 4 HOH A 39 365 365 HOH HOH . 
P 4 HOH A 40 366 366 HOH HOH . 
P 4 HOH A 41 367 367 HOH HOH . 
P 4 HOH A 42 368 368 HOH HOH . 
P 4 HOH A 43 369 369 HOH HOH . 
P 4 HOH A 44 370 370 HOH HOH . 
P 4 HOH A 45 371 371 HOH HOH . 
P 4 HOH A 46 372 372 HOH HOH . 
P 4 HOH A 47 373 373 HOH HOH . 
P 4 HOH A 48 374 374 HOH HOH . 
P 4 HOH A 49 375 375 HOH HOH . 
P 4 HOH A 50 376 376 HOH HOH . 
P 4 HOH A 51 377 377 HOH HOH . 
P 4 HOH A 52 378 378 HOH HOH . 
P 4 HOH A 53 379 379 HOH HOH . 
P 4 HOH A 54 380 380 HOH HOH . 
P 4 HOH A 55 381 381 HOH HOH . 
P 4 HOH A 56 382 382 HOH HOH . 
P 4 HOH A 57 383 383 HOH HOH . 
P 4 HOH A 58 384 384 HOH HOH . 
P 4 HOH A 59 385 385 HOH HOH . 
P 4 HOH A 60 386 386 HOH HOH . 
P 4 HOH A 61 387 387 HOH HOH . 
P 4 HOH A 62 388 388 HOH HOH . 
P 4 HOH A 63 389 389 HOH HOH . 
P 4 HOH A 64 390 390 HOH HOH . 
P 4 HOH A 65 391 391 HOH HOH . 
P 4 HOH A 66 392 392 HOH HOH . 
P 4 HOH A 67 393 393 HOH HOH . 
P 4 HOH A 68 394 394 HOH HOH . 
P 4 HOH A 69 395 395 HOH HOH . 
P 4 HOH A 70 396 396 HOH HOH . 
P 4 HOH A 71 397 397 HOH HOH . 
P 4 HOH A 72 398 398 HOH HOH . 
P 4 HOH A 73 399 399 HOH HOH . 
P 4 HOH A 74 400 400 HOH HOH . 
P 4 HOH A 75 401 401 HOH HOH . 
P 4 HOH A 76 402 402 HOH HOH . 
P 4 HOH A 77 403 403 HOH HOH . 
P 4 HOH A 78 404 404 HOH HOH . 
P 4 HOH A 79 405 405 HOH HOH . 
P 4 HOH A 80 406 406 HOH HOH . 
P 4 HOH A 81 407 407 HOH HOH . 
P 4 HOH A 82 408 408 HOH HOH . 
P 4 HOH A 83 409 409 HOH HOH . 
P 4 HOH A 84 410 410 HOH HOH . 
P 4 HOH A 85 411 411 HOH HOH . 
P 4 HOH A 86 412 412 HOH HOH . 
P 4 HOH A 87 413 413 HOH HOH . 
P 4 HOH A 88 414 414 HOH HOH . 
P 4 HOH A 89 415 415 HOH HOH . 
P 4 HOH A 90 416 416 HOH HOH . 
P 4 HOH A 91 417 417 HOH HOH . 
P 4 HOH A 92 418 418 HOH HOH . 
P 4 HOH A 93 419 419 HOH HOH . 
P 4 HOH A 94 420 420 HOH HOH . 
P 4 HOH A 95 421 421 HOH HOH . 
P 4 HOH A 96 422 422 HOH HOH . 
P 4 HOH A 97 423 423 HOH HOH . 
P 4 HOH A 98 424 424 HOH HOH . 
P 4 HOH A 99 425 425 HOH HOH . 
P 4 HOH A 100 426 426 HOH HOH . 
P 4 HOH A 101 427 427 HOH HOH . 
P 4 HOH A 102 428 428 HOH HOH . 
P 4 HOH A 103 429 429 HOH HOH . 
P 4 HOH A 104 430 430 HOH HOH . 
P 4 HOH A 105 431 431 HOH HOH . 
P 4 HOH A 106 432 432 HOH HOH . 
P 4 HOH A 107 433 433 HOH HOH . 
P 4 HOH A 108 434 434 HOH HOH . 
P 4 HOH A 109 435 435 HOH HOH . 
P 4 HOH A 110 436 436 HOH HOH . 
P 4 HOH A 111 437 437 HOH HOH . 
P 4 HOH A 112 438 438 HOH HOH . 
P 4 HOH A 113 439 439 HOH HOH . 
P 4 HOH A 114 440 440 HOH HOH . 
P 4 HOH A 115 441 441 HOH HOH . 
P 4 HOH A 116 442 442 HOH HOH . 
P 4 HOH A 117 443 443 HOH HOH . 
P 4 HOH A 118 444 444 HOH HOH . 
P 4 HOH A 119 445 445 HOH HOH . 
P 4 HOH A 120 446 446 HOH HOH . 
P 4 HOH A 121 447 447 HOH HOH . 
P 4 HOH A 122 448 448 HOH HOH . 
P 4 HOH A 123 449 449 HOH HOH . 
P 4 HOH A 124 450 450 HOH HOH . 
P 4 HOH A 125 451 451 HOH HOH . 
P 4 HOH A 126 452 452 HOH HOH . 
P 4 HOH A 127 453 453 HOH HOH . 
P 4 HOH A 128 454 454 HOH HOH . 
P 4 HOH A 129 455 455 HOH HOH . 
P 4 HOH A 130 456 456 HOH HOH . 
P 4 HOH A 131 457 457 HOH HOH . 
P 4 HOH A 132 458 458 HOH HOH . 
P 4 HOH A 133 459 459 HOH HOH . 
P 4 HOH A 134 460 460 HOH HOH . 
P 4 HOH A 135 461 461 HOH HOH . 
P 4 HOH A 136 462 462 HOH HOH . 
P 4 HOH A 137 463 463 HOH HOH . 
P 4 HOH A 138 464 464 HOH HOH . 
P 4 HOH A 139 465 465 HOH HOH . 
P 4 HOH A 140 466 466 HOH HOH . 
P 4 HOH A 141 467 467 HOH HOH . 
P 4 HOH A 142 468 468 HOH HOH . 
P 4 HOH A 143 469 469 HOH HOH . 
P 4 HOH A 144 470 470 HOH HOH . 
P 4 HOH A 145 471 471 HOH HOH . 
P 4 HOH A 146 472 472 HOH HOH . 
P 4 HOH A 147 473 473 HOH HOH . 
P 4 HOH A 148 474 474 HOH HOH . 
P 4 HOH A 149 475 475 HOH HOH . 
P 4 HOH A 150 476 476 HOH HOH . 
P 4 HOH A 151 477 477 HOH HOH . 
P 4 HOH A 152 478 478 HOH HOH . 
P 4 HOH A 153 479 479 HOH HOH . 
P 4 HOH A 154 480 480 HOH HOH . 
P 4 HOH A 155 481 481 HOH HOH . 
P 4 HOH A 156 482 482 HOH HOH . 
P 4 HOH A 157 483 483 HOH HOH . 
P 4 HOH A 158 484 484 HOH HOH . 
P 4 HOH A 159 485 485 HOH HOH . 
P 4 HOH A 160 486 486 HOH HOH . 
P 4 HOH A 161 487 487 HOH HOH . 
P 4 HOH A 162 488 488 HOH HOH . 
P 4 HOH A 163 489 489 HOH HOH . 
P 4 HOH A 164 490 490 HOH HOH . 
P 4 HOH A 165 491 491 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . M 3 37.156 12.683 4.87 1 78.33 ? C1 GOL 324 A 1 
HETATM 2 O O1 GOL . . . M 3 35.861 12.556 5.413 1 81.37 ? O1 GOL 324 A 1 
HETATM 3 C C2 GOL . . . M 3 37.108 12.217 3.42 1 78.43 ? C2 GOL 324 A 1 
HETATM 4 O O2 GOL . . . M 3 37.923 11.078 3.248 1 75.17 ? O2 GOL 324 A 1 
HETATM 5 C C3 GOL . . . M 3 37.543 13.353 2.502 1 74.94 ? C3 GOL 324 A 1 
HETATM 6 O O3 GOL . . . M 3 36.474 14.265 2.391 1 69.41 ? O3 GOL 324 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#