data_3AF9
#
_model_server_result.job_id            TJbRmobsc6_6624t-JMGIQ 
_model_server_result.datetime_utc      '2024-11-12 20:51:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3af9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":178}' 
#
_entry.id    3AF9 
#
_exptl.entry_id    3AF9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.411 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CADMIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3AF9 
_cell.length_a            182.433 
_cell.length_b            182.433 
_cell.length_c            182.433 
_cell.Z_PDB               96 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3AF9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        209 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'F 4 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    24-meric 
_pdbx_struct_assembly.oligomeric_count      24 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 
6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 
7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 
8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 
9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 
10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 
11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 
12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 
13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 
15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 
16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 
17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 
18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 
19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 
20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 
21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 
22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 
23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 
24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 49 X HIS 49 1_555 D CD CD . X CD 177 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc2 A OD2 ASP 80 X ASP 80 1_555 C CD CD . X CD 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc3 A OE1 GLN 82 X GLN 82 1_555 C CD CD . X CD 176 13_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? 
metalc ? metalc4 A NE2 HIS 114 X HIS 114 1_555 F PD PLL . X PLL 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc5 A SG CYS 126 X CYS 126 1_555 F PD PLL . X PLL 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc6 A SG CYS 126 X CYS 126 1_555 G PD PD . X PD 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc7 A OD2 ASP 135 X ASP 135 1_555 E CD CD . X CD 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
#
_chem_comp.formula           'Cd 2' 
_chem_comp.formula_weight    112.411 
_chem_comp.id                CD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CADMIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3AF9 
_atom_sites.fract_transf_matrix[1][1]    0.005481 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005481 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005481 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 X 1 175 1 SO4 SO4 . 
C 3 CD X 1 176 1 CD CD . 
D 3 CD X 1 177 2 CD CD . 
E 3 CD X 1 178 3 CD CD . 
F 4 PLL X 1 179 1 PLL PLL . 
G 5 PD X 1 180 2 PD PD . 
H 6 EDO X 1 181 1 EDO EDO . 
I 6 EDO X 1 182 2 EDO EDO . 
J 6 EDO X 1 183 3 EDO EDO . 
K 6 EDO X 1 184 4 EDO EDO . 
L 6 EDO X 1 185 5 EDO EDO . 
M 6 EDO X 1 186 6 EDO EDO . 
N 6 EDO X 1 187 7 EDO EDO . 
O 7 HOH X 1 188 1 HOH HOH . 
O 7 HOH X 2 189 2 HOH HOH . 
O 7 HOH X 3 190 3 HOH HOH . 
O 7 HOH X 4 191 4 HOH HOH . 
O 7 HOH X 5 192 5 HOH HOH . 
O 7 HOH X 6 193 6 HOH HOH . 
O 7 HOH X 7 194 7 HOH HOH . 
O 7 HOH X 8 195 8 HOH HOH . 
O 7 HOH X 9 196 9 HOH HOH . 
O 7 HOH X 10 197 10 HOH HOH . 
O 7 HOH X 11 198 11 HOH HOH . 
O 7 HOH X 12 199 12 HOH HOH . 
O 7 HOH X 13 200 13 HOH HOH . 
O 7 HOH X 14 201 14 HOH HOH . 
O 7 HOH X 15 202 15 HOH HOH . 
O 7 HOH X 16 203 16 HOH HOH . 
O 7 HOH X 17 204 17 HOH HOH . 
O 7 HOH X 18 205 18 HOH HOH . 
O 7 HOH X 19 206 19 HOH HOH . 
O 7 HOH X 20 207 20 HOH HOH . 
O 7 HOH X 21 208 21 HOH HOH . 
O 7 HOH X 22 209 22 HOH HOH . 
O 7 HOH X 23 210 23 HOH HOH . 
O 7 HOH X 24 211 24 HOH HOH . 
O 7 HOH X 25 212 25 HOH HOH . 
O 7 HOH X 26 213 26 HOH HOH . 
O 7 HOH X 27 214 27 HOH HOH . 
O 7 HOH X 28 215 28 HOH HOH . 
O 7 HOH X 29 216 29 HOH HOH . 
O 7 HOH X 30 217 30 HOH HOH . 
O 7 HOH X 31 218 31 HOH HOH . 
O 7 HOH X 32 219 32 HOH HOH . 
O 7 HOH X 33 220 33 HOH HOH . 
O 7 HOH X 34 221 34 HOH HOH . 
O 7 HOH X 35 222 35 HOH HOH . 
O 7 HOH X 36 223 36 HOH HOH . 
O 7 HOH X 37 224 37 HOH HOH . 
O 7 HOH X 38 225 38 HOH HOH . 
O 7 HOH X 39 226 39 HOH HOH . 
O 7 HOH X 40 227 40 HOH HOH . 
O 7 HOH X 41 228 41 HOH HOH . 
O 7 HOH X 42 229 42 HOH HOH . 
O 7 HOH X 43 230 43 HOH HOH . 
O 7 HOH X 44 231 44 HOH HOH . 
O 7 HOH X 45 232 45 HOH HOH . 
O 7 HOH X 46 233 46 HOH HOH . 
O 7 HOH X 47 234 47 HOH HOH . 
O 7 HOH X 48 235 48 HOH HOH . 
O 7 HOH X 49 236 49 HOH HOH . 
O 7 HOH X 50 237 50 HOH HOH . 
O 7 HOH X 51 238 51 HOH HOH . 
O 7 HOH X 52 239 52 HOH HOH . 
O 7 HOH X 53 240 53 HOH HOH . 
O 7 HOH X 54 241 54 HOH HOH . 
O 7 HOH X 55 242 55 HOH HOH . 
O 7 HOH X 56 243 56 HOH HOH . 
O 7 HOH X 57 244 57 HOH HOH . 
O 7 HOH X 58 245 58 HOH HOH . 
O 7 HOH X 59 246 59 HOH HOH . 
O 7 HOH X 60 247 60 HOH HOH . 
O 7 HOH X 61 248 61 HOH HOH . 
O 7 HOH X 62 249 62 HOH HOH . 
O 7 HOH X 63 250 63 HOH HOH . 
O 7 HOH X 64 251 64 HOH HOH . 
O 7 HOH X 65 252 65 HOH HOH . 
O 7 HOH X 66 253 66 HOH HOH . 
O 7 HOH X 67 254 67 HOH HOH . 
O 7 HOH X 68 255 68 HOH HOH . 
O 7 HOH X 69 256 69 HOH HOH . 
O 7 HOH X 70 257 70 HOH HOH . 
O 7 HOH X 71 258 71 HOH HOH . 
O 7 HOH X 72 259 72 HOH HOH . 
O 7 HOH X 73 260 73 HOH HOH . 
O 7 HOH X 74 261 74 HOH HOH . 
O 7 HOH X 75 262 75 HOH HOH . 
O 7 HOH X 76 263 76 HOH HOH . 
O 7 HOH X 77 264 77 HOH HOH . 
O 7 HOH X 78 265 78 HOH HOH . 
O 7 HOH X 79 266 79 HOH HOH . 
O 7 HOH X 80 267 80 HOH HOH . 
O 7 HOH X 81 268 81 HOH HOH . 
O 7 HOH X 82 269 82 HOH HOH . 
O 7 HOH X 83 270 83 HOH HOH . 
O 7 HOH X 84 271 84 HOH HOH . 
O 7 HOH X 85 272 85 HOH HOH . 
O 7 HOH X 86 273 86 HOH HOH . 
O 7 HOH X 87 274 87 HOH HOH . 
O 7 HOH X 88 275 88 HOH HOH . 
O 7 HOH X 89 276 89 HOH HOH . 
O 7 HOH X 90 277 90 HOH HOH . 
O 7 HOH X 91 278 91 HOH HOH . 
O 7 HOH X 92 279 92 HOH HOH . 
O 7 HOH X 93 280 93 HOH HOH . 
O 7 HOH X 94 281 94 HOH HOH . 
O 7 HOH X 95 282 95 HOH HOH . 
O 7 HOH X 96 283 96 HOH HOH . 
O 7 HOH X 97 284 97 HOH HOH . 
O 7 HOH X 98 285 98 HOH HOH . 
O 7 HOH X 99 286 99 HOH HOH . 
O 7 HOH X 100 287 100 HOH HOH . 
O 7 HOH X 101 288 101 HOH HOH . 
O 7 HOH X 102 289 102 HOH HOH . 
O 7 HOH X 103 290 103 HOH HOH . 
O 7 HOH X 104 291 104 HOH HOH . 
O 7 HOH X 105 292 105 HOH HOH . 
O 7 HOH X 106 293 106 HOH HOH . 
O 7 HOH X 107 294 107 HOH HOH . 
O 7 HOH X 108 295 108 HOH HOH . 
O 7 HOH X 109 296 109 HOH HOH . 
O 7 HOH X 110 297 110 HOH HOH . 
O 7 HOH X 111 298 111 HOH HOH . 
O 7 HOH X 112 299 112 HOH HOH . 
O 7 HOH X 113 300 113 HOH HOH . 
O 7 HOH X 114 301 114 HOH HOH . 
O 7 HOH X 115 302 115 HOH HOH . 
O 7 HOH X 116 303 116 HOH HOH . 
O 7 HOH X 117 304 117 HOH HOH . 
O 7 HOH X 118 305 118 HOH HOH . 
O 7 HOH X 119 306 119 HOH HOH . 
O 7 HOH X 120 307 120 HOH HOH . 
O 7 HOH X 121 308 121 HOH HOH . 
O 7 HOH X 122 309 122 HOH HOH . 
O 7 HOH X 123 310 123 HOH HOH . 
O 7 HOH X 124 311 124 HOH HOH . 
O 7 HOH X 125 312 125 HOH HOH . 
O 7 HOH X 126 313 126 HOH HOH . 
O 7 HOH X 127 314 127 HOH HOH . 
O 7 HOH X 128 315 128 HOH HOH . 
O 7 HOH X 129 316 129 HOH HOH . 
O 7 HOH X 130 317 130 HOH HOH . 
O 7 HOH X 131 318 131 HOH HOH . 
O 7 HOH X 132 319 132 HOH HOH . 
O 7 HOH X 133 320 133 HOH HOH . 
O 7 HOH X 134 321 134 HOH HOH . 
O 7 HOH X 135 322 135 HOH HOH . 
O 7 HOH X 136 323 136 HOH HOH . 
O 7 HOH X 137 324 137 HOH HOH . 
O 7 HOH X 138 325 138 HOH HOH . 
O 7 HOH X 139 326 139 HOH HOH . 
O 7 HOH X 140 327 140 HOH HOH . 
O 7 HOH X 141 328 141 HOH HOH . 
O 7 HOH X 142 329 142 HOH HOH . 
O 7 HOH X 143 330 143 HOH HOH . 
O 7 HOH X 144 331 144 HOH HOH . 
O 7 HOH X 145 332 145 HOH HOH . 
O 7 HOH X 146 333 146 HOH HOH . 
O 7 HOH X 147 334 147 HOH HOH . 
O 7 HOH X 148 335 148 HOH HOH . 
O 7 HOH X 149 336 149 HOH HOH . 
O 7 HOH X 150 337 150 HOH HOH . 
O 7 HOH X 151 338 151 HOH HOH . 
O 7 HOH X 152 339 152 HOH HOH . 
O 7 HOH X 153 340 153 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CD 
_atom_site.label_atom_id         CD 
_atom_site.label_comp_id         CD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -23.864 
_atom_site.Cartn_y               -29.931 
_atom_site.Cartn_z               -23.839 
_atom_site.occupancy             0.2 
_atom_site.B_iso_or_equiv        28.31 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CD 
_atom_site.auth_comp_id          CD 
_atom_site.auth_seq_id           178 
_atom_site.auth_asym_id          X 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#