data_3AGI # _model_server_result.job_id UcHrynbFZNqKTPtDdzEgow _model_server_result.datetime_utc '2024-12-26 12:30:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3agi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":134}' # _entry.id 3AGI # _exptl.entry_id 3AGI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AGI _cell.length_a 78.033 _cell.length_b 78.033 _cell.length_c 37.752 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AGI _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc1 A O SER 60 A SER 60 1_555 F NA NA . A NA 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc2 A O CYS 64 A CYS 64 1_555 F NA NA . A NA 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc3 A OG SER 72 A SER 72 1_555 F NA NA . A NA 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc4 A O ARG 73 A ARG 73 1_555 F NA NA . A NA 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc5 F NA NA . A NA 134 1_555 O O HOH . A HOH 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc6 F NA NA . A NA 134 1_555 O O HOH . A HOH 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3AGI _atom_sites.fract_transf_matrix[1][1] 0.012815 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012815 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026489 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 130 130 ACT ACT . C 3 ARG A 1 131 131 ARG ARG . D 3 ARG A 1 132 132 ARG ARG . E 3 ARG A 1 133 133 ARG ARG . F 4 NA A 1 134 134 NA NA . G 5 CL A 1 135 135 CL CL . H 5 CL A 1 136 136 CL CL . I 5 CL A 1 137 137 CL CL . J 5 CL A 1 138 138 CL CL . K 5 CL A 1 139 139 CL CL . L 5 CL A 1 140 140 CL CL . M 5 CL A 1 141 141 CL CL . N 5 CL A 1 142 142 CL CL . O 6 HOH A 1 143 143 HOH HOH . O 6 HOH A 2 144 144 HOH HOH . O 6 HOH A 3 145 145 HOH HOH . O 6 HOH A 4 146 146 HOH HOH . O 6 HOH A 5 147 147 HOH HOH . O 6 HOH A 6 148 148 HOH HOH . O 6 HOH A 7 149 149 HOH HOH . O 6 HOH A 8 150 150 HOH HOH . O 6 HOH A 9 151 151 HOH HOH . O 6 HOH A 10 152 152 HOH HOH . O 6 HOH A 11 153 153 HOH HOH . O 6 HOH A 12 154 154 HOH HOH . O 6 HOH A 13 155 155 HOH HOH . O 6 HOH A 14 156 156 HOH HOH . O 6 HOH A 15 157 157 HOH HOH . O 6 HOH A 16 158 158 HOH HOH . O 6 HOH A 17 159 159 HOH HOH . O 6 HOH A 18 160 160 HOH HOH . O 6 HOH A 19 161 161 HOH HOH . O 6 HOH A 20 162 162 HOH HOH . O 6 HOH A 21 163 163 HOH HOH . O 6 HOH A 22 164 164 HOH HOH . O 6 HOH A 23 165 165 HOH HOH . O 6 HOH A 24 166 166 HOH HOH . O 6 HOH A 25 167 167 HOH HOH . O 6 HOH A 26 168 168 HOH HOH . O 6 HOH A 27 169 169 HOH HOH . O 6 HOH A 28 170 170 HOH HOH . O 6 HOH A 29 171 171 HOH HOH . O 6 HOH A 30 172 172 HOH HOH . O 6 HOH A 31 173 173 HOH HOH . O 6 HOH A 32 174 174 HOH HOH . O 6 HOH A 33 175 175 HOH HOH . O 6 HOH A 34 176 176 HOH HOH . O 6 HOH A 35 177 177 HOH HOH . O 6 HOH A 36 178 178 HOH HOH . O 6 HOH A 37 179 179 HOH HOH . O 6 HOH A 38 180 180 HOH HOH . O 6 HOH A 39 181 181 HOH HOH . O 6 HOH A 40 182 182 HOH HOH . O 6 HOH A 41 183 183 HOH HOH . O 6 HOH A 42 184 184 HOH HOH . O 6 HOH A 43 185 185 HOH HOH . O 6 HOH A 44 186 186 HOH HOH . O 6 HOH A 45 187 187 HOH HOH . O 6 HOH A 46 188 188 HOH HOH . O 6 HOH A 47 189 189 HOH HOH . O 6 HOH A 48 190 190 HOH HOH . O 6 HOH A 49 191 191 HOH HOH . O 6 HOH A 50 192 192 HOH HOH . O 6 HOH A 51 193 193 HOH HOH . O 6 HOH A 52 194 194 HOH HOH . O 6 HOH A 53 195 195 HOH HOH . O 6 HOH A 54 196 196 HOH HOH . O 6 HOH A 55 197 197 HOH HOH . O 6 HOH A 56 198 198 HOH HOH . O 6 HOH A 57 199 199 HOH HOH . O 6 HOH A 58 200 200 HOH HOH . O 6 HOH A 59 201 201 HOH HOH . O 6 HOH A 60 202 202 HOH HOH . O 6 HOH A 61 203 203 HOH HOH . O 6 HOH A 62 204 204 HOH HOH . O 6 HOH A 63 205 205 HOH HOH . O 6 HOH A 64 206 206 HOH HOH . O 6 HOH A 65 207 207 HOH HOH . O 6 HOH A 66 208 208 HOH HOH . O 6 HOH A 67 209 209 HOH HOH . O 6 HOH A 68 210 210 HOH HOH . O 6 HOH A 69 211 211 HOH HOH . O 6 HOH A 70 212 212 HOH HOH . O 6 HOH A 71 213 213 HOH HOH . O 6 HOH A 72 214 214 HOH HOH . O 6 HOH A 73 215 215 HOH HOH . O 6 HOH A 74 216 216 HOH HOH . O 6 HOH A 75 217 217 HOH HOH . O 6 HOH A 76 218 218 HOH HOH . O 6 HOH A 77 219 219 HOH HOH . O 6 HOH A 78 220 220 HOH HOH . O 6 HOH A 79 221 221 HOH HOH . O 6 HOH A 80 222 222 HOH HOH . O 6 HOH A 81 223 223 HOH HOH . O 6 HOH A 82 224 224 HOH HOH . O 6 HOH A 83 225 225 HOH HOH . O 6 HOH A 84 226 226 HOH HOH . O 6 HOH A 85 227 227 HOH HOH . O 6 HOH A 86 228 228 HOH HOH . O 6 HOH A 87 229 229 HOH HOH . O 6 HOH A 88 230 230 HOH HOH . O 6 HOH A 89 231 231 HOH HOH . O 6 HOH A 90 232 232 HOH HOH . O 6 HOH A 91 233 233 HOH HOH . O 6 HOH A 92 234 234 HOH HOH . O 6 HOH A 93 235 235 HOH HOH . O 6 HOH A 94 236 236 HOH HOH . O 6 HOH A 95 237 237 HOH HOH . O 6 HOH A 96 238 238 HOH HOH . O 6 HOH A 97 239 239 HOH HOH . O 6 HOH A 98 240 240 HOH HOH . O 6 HOH A 99 241 241 HOH HOH . O 6 HOH A 100 242 242 HOH HOH . O 6 HOH A 101 243 243 HOH HOH . O 6 HOH A 102 244 244 HOH HOH . O 6 HOH A 103 245 245 HOH HOH . O 6 HOH A 104 246 246 HOH HOH . O 6 HOH A 105 247 247 HOH HOH . O 6 HOH A 106 248 248 HOH HOH . O 6 HOH A 107 249 249 HOH HOH . O 6 HOH A 108 250 250 HOH HOH . O 6 HOH A 109 251 251 HOH HOH . O 6 HOH A 110 252 252 HOH HOH . O 6 HOH A 111 253 253 HOH HOH . O 6 HOH A 112 254 254 HOH HOH . O 6 HOH A 113 255 255 HOH HOH . O 6 HOH A 114 256 256 HOH HOH . O 6 HOH A 115 257 257 HOH HOH . O 6 HOH A 116 258 258 HOH HOH . O 6 HOH A 117 259 259 HOH HOH . O 6 HOH A 118 260 260 HOH HOH . O 6 HOH A 119 261 261 HOH HOH . O 6 HOH A 120 262 262 HOH HOH . O 6 HOH A 121 263 263 HOH HOH . O 6 HOH A 122 264 264 HOH HOH . O 6 HOH A 123 265 265 HOH HOH . O 6 HOH A 124 266 266 HOH HOH . O 6 HOH A 125 267 267 HOH HOH . O 6 HOH A 126 268 268 HOH HOH . O 6 HOH A 127 269 269 HOH HOH . O 6 HOH A 128 270 270 HOH HOH . O 6 HOH A 129 271 271 HOH HOH . O 6 HOH A 130 272 272 HOH HOH . O 6 HOH A 131 273 273 HOH HOH . O 6 HOH A 132 274 274 HOH HOH . O 6 HOH A 133 275 275 HOH HOH . O 6 HOH A 134 276 276 HOH HOH . O 6 HOH A 135 277 277 HOH HOH . O 6 HOH A 136 278 278 HOH HOH . O 6 HOH A 137 279 279 HOH HOH . O 6 HOH A 138 280 280 HOH HOH . O 6 HOH A 139 281 281 HOH HOH . O 6 HOH A 140 282 282 HOH HOH . O 6 HOH A 141 283 283 HOH HOH . O 6 HOH A 142 284 284 HOH HOH . O 6 HOH A 143 285 285 HOH HOH . O 6 HOH A 144 286 286 HOH HOH . O 6 HOH A 145 287 287 HOH HOH . O 6 HOH A 146 288 288 HOH HOH . O 6 HOH A 147 289 289 HOH HOH . O 6 HOH A 148 290 290 HOH HOH . O 6 HOH A 149 291 291 HOH HOH . O 6 HOH A 150 292 292 HOH HOH . O 6 HOH A 151 293 293 HOH HOH . O 6 HOH A 152 294 294 HOH HOH . O 6 HOH A 153 295 295 HOH HOH . O 6 HOH A 154 296 296 HOH HOH . O 6 HOH A 155 297 297 HOH HOH . O 6 HOH A 156 298 298 HOH HOH . O 6 HOH A 157 299 299 HOH HOH . O 6 HOH A 158 300 300 HOH HOH . O 6 HOH A 159 301 301 HOH HOH . O 6 HOH A 160 302 302 HOH HOH . O 6 HOH A 161 303 303 HOH HOH . O 6 HOH A 162 304 304 HOH HOH . O 6 HOH A 163 305 305 HOH HOH . O 6 HOH A 164 306 306 HOH HOH . O 6 HOH A 165 307 307 HOH HOH . O 6 HOH A 166 308 308 HOH HOH . O 6 HOH A 167 309 309 HOH HOH . O 6 HOH A 168 310 310 HOH HOH . O 6 HOH A 169 311 311 HOH HOH . O 6 HOH A 170 312 312 HOH HOH . O 6 HOH A 171 313 313 HOH HOH . O 6 HOH A 172 314 314 HOH HOH . O 6 HOH A 173 315 315 HOH HOH . O 6 HOH A 174 316 316 HOH HOH . O 6 HOH A 175 317 317 HOH HOH . O 6 HOH A 176 318 318 HOH HOH . O 6 HOH A 177 319 319 HOH HOH . O 6 HOH A 178 320 320 HOH HOH . O 6 HOH A 179 321 321 HOH HOH . O 6 HOH A 180 322 322 HOH HOH . O 6 HOH A 181 323 323 HOH HOH . O 6 HOH A 182 324 324 HOH HOH . O 6 HOH A 183 325 325 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 7.707 _atom_site.Cartn_y 13.923 _atom_site.Cartn_z 12.78 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 10.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 134 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #