data_3AGO # _model_server_result.job_id EVwb4SsqPesIxtTGWn8Zow _model_server_result.datetime_utc '2024-12-04 03:07:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ago # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":116}' # _entry.id 3AGO # _exptl.entry_id 3AGO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.98 _cell.angle_gamma 90 _cell.entry_id 3AGO _cell.length_a 34.586 _cell.length_b 39.425 _cell.length_c 31.646 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AGO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 1 A CYS 1 1_555 A SG CYS 54 A CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf2 A SG CYS 9 A CYS 9 1_555 A SG CYS 113 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 55 A CYS 55 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OD1 ASP 29 A ASP 29 1_555 C CA CA . A CA 116 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.453 ? metalc ? metalc2 A OD1 ASP 29 A ASP 29 1_555 C CA CA . A CA 116 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.578 ? metalc ? metalc3 A O ALA 31 A ALA 31 1_555 C CA CA . A CA 116 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.336 ? metalc ? metalc4 A O ALA 31 A ALA 31 1_555 C CA CA . A CA 116 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.534 ? metalc ? metalc5 A OD1 ASN 32 A ASN 32 1_555 C CA CA . A CA 116 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.67 ? metalc ? metalc6 A O TYR 39 A TYR 39 1_555 C CA CA . A CA 116 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.854 ? metalc ? metalc7 A OD1 ASP 45 A ASP 45 1_555 D CA CA . A CA 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc8 A O ILE 51 A ILE 51 1_555 D CA CA . A CA 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc9 C CA CA . A CA 116 1_555 F O HOH . A HOH 198 1_555 ? A ? ? ? ? ? ? ? ? ? ? 3.182 ? metalc ? metalc10 D CA CA . A CA 117 1_555 F O HOH . A HOH 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc11 D CA CA . A CA 117 1_555 F O HOH . A HOH 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc12 D CA CA . A CA 117 1_555 F O HOH . A HOH 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc13 D CA CA . A CA 117 1_555 F O HOH . A HOH 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3AGO _atom_sites.fract_transf_matrix[1][1] 0.028913 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009944 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025365 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.033416 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3AM A 1 115 115 3AM 3AM . C 3 CA A 1 116 116 CA CA . D 3 CA A 1 117 117 CA CA . E 4 CL A 1 118 118 CL CL . F 5 HOH A 1 119 119 HOH HOH . F 5 HOH A 2 120 120 HOH HOH . F 5 HOH A 3 121 121 HOH HOH . F 5 HOH A 4 122 122 HOH HOH . F 5 HOH A 5 123 123 HOH HOH . F 5 HOH A 6 124 124 HOH HOH . F 5 HOH A 7 125 125 HOH HOH . F 5 HOH A 8 126 126 HOH HOH . F 5 HOH A 9 127 127 HOH HOH . F 5 HOH A 10 128 128 HOH HOH . F 5 HOH A 11 129 129 HOH HOH . F 5 HOH A 12 130 130 HOH HOH . F 5 HOH A 13 131 131 HOH HOH . F 5 HOH A 14 132 132 HOH HOH . F 5 HOH A 15 133 133 HOH HOH . F 5 HOH A 16 134 134 HOH HOH . F 5 HOH A 17 135 135 HOH HOH . F 5 HOH A 18 138 138 HOH HOH . F 5 HOH A 19 139 139 HOH HOH . F 5 HOH A 20 140 140 HOH HOH . F 5 HOH A 21 141 141 HOH HOH . F 5 HOH A 22 142 142 HOH HOH . F 5 HOH A 23 143 143 HOH HOH . F 5 HOH A 24 144 144 HOH HOH . F 5 HOH A 25 145 145 HOH HOH . F 5 HOH A 26 146 146 HOH HOH . F 5 HOH A 27 147 147 HOH HOH . F 5 HOH A 28 148 148 HOH HOH . F 5 HOH A 29 149 149 HOH HOH . F 5 HOH A 30 150 150 HOH HOH . F 5 HOH A 31 151 151 HOH HOH . F 5 HOH A 32 152 152 HOH HOH . F 5 HOH A 33 153 153 HOH HOH . F 5 HOH A 34 154 154 HOH HOH . F 5 HOH A 35 155 155 HOH HOH . F 5 HOH A 36 156 156 HOH HOH . F 5 HOH A 37 157 157 HOH HOH . F 5 HOH A 38 158 158 HOH HOH . F 5 HOH A 39 159 159 HOH HOH . F 5 HOH A 40 160 160 HOH HOH . F 5 HOH A 41 161 161 HOH HOH . F 5 HOH A 42 162 162 HOH HOH . F 5 HOH A 43 163 163 HOH HOH . F 5 HOH A 44 164 164 HOH HOH . F 5 HOH A 45 165 165 HOH HOH . F 5 HOH A 46 166 166 HOH HOH . F 5 HOH A 47 167 167 HOH HOH . F 5 HOH A 48 168 168 HOH HOH . F 5 HOH A 49 169 169 HOH HOH . F 5 HOH A 50 170 170 HOH HOH . F 5 HOH A 51 171 171 HOH HOH . F 5 HOH A 52 172 172 HOH HOH . F 5 HOH A 53 173 173 HOH HOH . F 5 HOH A 54 174 174 HOH HOH . F 5 HOH A 55 175 175 HOH HOH . F 5 HOH A 56 176 176 HOH HOH . F 5 HOH A 57 177 177 HOH HOH . F 5 HOH A 58 178 178 HOH HOH . F 5 HOH A 59 179 179 HOH HOH . F 5 HOH A 60 180 180 HOH HOH . F 5 HOH A 61 181 181 HOH HOH . F 5 HOH A 62 182 182 HOH HOH . F 5 HOH A 63 183 183 HOH HOH . F 5 HOH A 64 184 184 HOH HOH . F 5 HOH A 65 185 185 HOH HOH . F 5 HOH A 66 186 186 HOH HOH . F 5 HOH A 67 187 187 HOH HOH . F 5 HOH A 68 188 188 HOH HOH . F 5 HOH A 69 189 189 HOH HOH . F 5 HOH A 70 190 190 HOH HOH . F 5 HOH A 71 191 191 HOH HOH . F 5 HOH A 72 192 192 HOH HOH . F 5 HOH A 73 193 193 HOH HOH . F 5 HOH A 74 194 194 HOH HOH . F 5 HOH A 75 195 195 HOH HOH . F 5 HOH A 76 196 196 HOH HOH . F 5 HOH A 77 197 197 HOH HOH . F 5 HOH A 78 198 198 HOH HOH . F 5 HOH A 79 199 199 HOH HOH . F 5 HOH A 80 200 200 HOH HOH . F 5 HOH A 81 201 201 HOH HOH . F 5 HOH A 82 202 202 HOH HOH . F 5 HOH A 83 203 203 HOH HOH . F 5 HOH A 84 204 204 HOH HOH . F 5 HOH A 85 205 205 HOH HOH . F 5 HOH A 86 206 206 HOH HOH . F 5 HOH A 87 207 207 HOH HOH . F 5 HOH A 88 208 208 HOH HOH . F 5 HOH A 89 209 209 HOH HOH . F 5 HOH A 90 210 210 HOH HOH . F 5 HOH A 91 211 211 HOH HOH . F 5 HOH A 92 212 212 HOH HOH . F 5 HOH A 93 213 213 HOH HOH . F 5 HOH A 94 214 214 HOH HOH . F 5 HOH A 95 215 215 HOH HOH . F 5 HOH A 96 216 216 HOH HOH . F 5 HOH A 97 217 217 HOH HOH . F 5 HOH A 98 219 219 HOH HOH . F 5 HOH A 99 220 220 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CA CA CA . A . C 3 11.483 3.998 -10.622 0.5 10.17 ? CA CA 116 A 1 HETATM 2 CA CA CA . B . C 3 11.749 3.928 -12.062 0.5 12.04 ? CA CA 116 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 546 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 2 #