data_3AH3 # _model_server_result.job_id QVeZeN4RxhBnNqyKl8o7mg _model_server_result.datetime_utc '2025-03-05 01:32:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ah3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":337}' # _entry.id 3AH3 # _exptl.entry_id 3AH3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.28 _cell.angle_gamma 90 _cell.entry_id 3AH3 _cell.length_a 83.335 _cell.length_b 61.737 _cell.length_c 170.054 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AH3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,O,P,Q,T,V 1 1,2 B,D,J,K,L,M,N,R,S,U,W 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 58.84539 0 168.281377 3 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 P N N ? 3 Q N N ? 3 S N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3AH3 _atom_sites.fract_transf_matrix[1][1] 0.012 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001746 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016198 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005942 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 335 4 SO4 SO4 . F 3 EDO A 1 336 5 EDO EDO . G 3 EDO A 1 337 6 EDO EDO . H 3 EDO A 1 338 7 EDO EDO . I 3 EDO A 1 339 15 EDO EDO . J 2 SO4 B 1 335 1 SO4 SO4 . K 3 EDO B 1 336 8 EDO EDO . L 3 EDO B 1 337 9 EDO EDO . M 3 EDO B 1 338 10 EDO EDO . N 3 EDO B 1 339 14 EDO EDO . O 2 SO4 C 1 335 2 SO4 SO4 . P 3 EDO C 1 336 11 EDO EDO . Q 3 EDO C 1 337 12 EDO EDO . R 2 SO4 D 1 335 3 SO4 SO4 . S 3 EDO D 1 336 13 EDO EDO . T 4 HOH A 1 340 1 HOH HOH . T 4 HOH A 2 341 9 HOH HOH . T 4 HOH A 3 342 10 HOH HOH . T 4 HOH A 4 343 11 HOH HOH . T 4 HOH A 5 344 13 HOH HOH . T 4 HOH A 6 345 16 HOH HOH . T 4 HOH A 7 346 18 HOH HOH . T 4 HOH A 8 347 22 HOH HOH . T 4 HOH A 9 348 23 HOH HOH . T 4 HOH A 10 349 30 HOH HOH . T 4 HOH A 11 350 37 HOH HOH . T 4 HOH A 12 351 42 HOH HOH . T 4 HOH A 13 352 43 HOH HOH . T 4 HOH A 14 353 45 HOH HOH . T 4 HOH A 15 354 47 HOH HOH . T 4 HOH A 16 355 48 HOH HOH . T 4 HOH A 17 356 49 HOH HOH . T 4 HOH A 18 357 52 HOH HOH . T 4 HOH A 19 358 53 HOH HOH . T 4 HOH A 20 359 58 HOH HOH . T 4 HOH A 21 360 59 HOH HOH . T 4 HOH A 22 361 60 HOH HOH . T 4 HOH A 23 362 61 HOH HOH . T 4 HOH A 24 363 62 HOH HOH . T 4 HOH A 25 364 64 HOH HOH . T 4 HOH A 26 365 66 HOH HOH . T 4 HOH A 27 366 68 HOH HOH . T 4 HOH A 28 367 69 HOH HOH . T 4 HOH A 29 368 73 HOH HOH . T 4 HOH A 30 369 75 HOH HOH . T 4 HOH A 31 370 76 HOH HOH . T 4 HOH A 32 371 77 HOH HOH . T 4 HOH A 33 372 79 HOH HOH . T 4 HOH A 34 373 83 HOH HOH . T 4 HOH A 35 374 95 HOH HOH . T 4 HOH A 36 375 96 HOH HOH . T 4 HOH A 37 376 97 HOH HOH . T 4 HOH A 38 377 98 HOH HOH . T 4 HOH A 39 378 103 HOH HOH . T 4 HOH A 40 379 109 HOH HOH . T 4 HOH A 41 380 114 HOH HOH . T 4 HOH A 42 381 120 HOH HOH . T 4 HOH A 43 382 122 HOH HOH . T 4 HOH A 44 383 124 HOH HOH . T 4 HOH A 45 384 126 HOH HOH . T 4 HOH A 46 385 133 HOH HOH . T 4 HOH A 47 386 134 HOH HOH . T 4 HOH A 48 387 140 HOH HOH . T 4 HOH A 49 388 144 HOH HOH . T 4 HOH A 50 389 149 HOH HOH . T 4 HOH A 51 390 152 HOH HOH . T 4 HOH A 52 391 154 HOH HOH . T 4 HOH A 53 392 155 HOH HOH . T 4 HOH A 54 393 159 HOH HOH . T 4 HOH A 55 394 160 HOH HOH . T 4 HOH A 56 395 164 HOH HOH . T 4 HOH A 57 396 170 HOH HOH . T 4 HOH A 58 397 172 HOH HOH . T 4 HOH A 59 398 174 HOH HOH . T 4 HOH A 60 399 177 HOH HOH . T 4 HOH A 61 400 179 HOH HOH . T 4 HOH A 62 401 181 HOH HOH . T 4 HOH A 63 402 184 HOH HOH . T 4 HOH A 64 403 189 HOH HOH . T 4 HOH A 65 404 191 HOH HOH . T 4 HOH A 66 405 192 HOH HOH . T 4 HOH A 67 406 193 HOH HOH . T 4 HOH A 68 407 194 HOH HOH . T 4 HOH A 69 408 196 HOH HOH . T 4 HOH A 70 409 198 HOH HOH . T 4 HOH A 71 410 201 HOH HOH . T 4 HOH A 72 411 204 HOH HOH . T 4 HOH A 73 412 205 HOH HOH . T 4 HOH A 74 413 206 HOH HOH . T 4 HOH A 75 414 207 HOH HOH . T 4 HOH A 76 415 210 HOH HOH . T 4 HOH A 77 416 211 HOH HOH . T 4 HOH A 78 417 213 HOH HOH . T 4 HOH A 79 418 215 HOH HOH . T 4 HOH A 80 419 216 HOH HOH . T 4 HOH A 81 420 218 HOH HOH . T 4 HOH A 82 421 222 HOH HOH . T 4 HOH A 83 422 225 HOH HOH . T 4 HOH A 84 423 229 HOH HOH . T 4 HOH A 85 424 230 HOH HOH . T 4 HOH A 86 425 232 HOH HOH . T 4 HOH A 87 426 233 HOH HOH . T 4 HOH A 88 427 238 HOH HOH . T 4 HOH A 89 428 241 HOH HOH . T 4 HOH A 90 429 242 HOH HOH . T 4 HOH A 91 430 244 HOH HOH . T 4 HOH A 92 431 249 HOH HOH . T 4 HOH A 93 432 250 HOH HOH . T 4 HOH A 94 433 251 HOH HOH . T 4 HOH A 95 434 255 HOH HOH . T 4 HOH A 96 435 259 HOH HOH . T 4 HOH A 97 436 263 HOH HOH . T 4 HOH A 98 437 264 HOH HOH . T 4 HOH A 99 438 272 HOH HOH . T 4 HOH A 100 439 273 HOH HOH . T 4 HOH A 101 440 274 HOH HOH . T 4 HOH A 102 441 275 HOH HOH . T 4 HOH A 103 442 276 HOH HOH . T 4 HOH A 104 443 277 HOH HOH . T 4 HOH A 105 444 279 HOH HOH . T 4 HOH A 106 445 282 HOH HOH . T 4 HOH A 107 446 285 HOH HOH . T 4 HOH A 108 447 287 HOH HOH . T 4 HOH A 109 448 289 HOH HOH . T 4 HOH A 110 449 290 HOH HOH . T 4 HOH A 111 450 302 HOH HOH . T 4 HOH A 112 451 303 HOH HOH . T 4 HOH A 113 453 305 HOH HOH . T 4 HOH A 114 454 321 HOH HOH . T 4 HOH A 115 455 323 HOH HOH . U 4 HOH B 1 340 3 HOH HOH . U 4 HOH B 2 341 5 HOH HOH . U 4 HOH B 3 342 8 HOH HOH . U 4 HOH B 4 343 12 HOH HOH . U 4 HOH B 5 344 14 HOH HOH . U 4 HOH B 6 345 19 HOH HOH . U 4 HOH B 7 346 20 HOH HOH . U 4 HOH B 8 347 25 HOH HOH . U 4 HOH B 9 348 27 HOH HOH . U 4 HOH B 10 349 35 HOH HOH . U 4 HOH B 11 350 38 HOH HOH . U 4 HOH B 12 351 40 HOH HOH . U 4 HOH B 13 352 41 HOH HOH . U 4 HOH B 14 353 46 HOH HOH . U 4 HOH B 15 354 54 HOH HOH . U 4 HOH B 16 355 55 HOH HOH . U 4 HOH B 17 356 57 HOH HOH . U 4 HOH B 18 357 63 HOH HOH . U 4 HOH B 19 358 67 HOH HOH . U 4 HOH B 20 359 70 HOH HOH . U 4 HOH B 21 360 72 HOH HOH . U 4 HOH B 22 361 78 HOH HOH . U 4 HOH B 23 362 84 HOH HOH . U 4 HOH B 24 363 85 HOH HOH . U 4 HOH B 25 364 86 HOH HOH . U 4 HOH B 26 365 88 HOH HOH . U 4 HOH B 27 366 89 HOH HOH . U 4 HOH B 28 367 91 HOH HOH . U 4 HOH B 29 368 93 HOH HOH . U 4 HOH B 30 369 99 HOH HOH . U 4 HOH B 31 370 100 HOH HOH . U 4 HOH B 32 371 101 HOH HOH . U 4 HOH B 33 372 106 HOH HOH . U 4 HOH B 34 373 112 HOH HOH . U 4 HOH B 35 374 113 HOH HOH . U 4 HOH B 36 375 121 HOH HOH . U 4 HOH B 37 376 125 HOH HOH . U 4 HOH B 38 377 127 HOH HOH . U 4 HOH B 39 378 131 HOH HOH . U 4 HOH B 40 379 135 HOH HOH . U 4 HOH B 41 380 136 HOH HOH . U 4 HOH B 42 381 138 HOH HOH . U 4 HOH B 43 382 139 HOH HOH . U 4 HOH B 44 383 147 HOH HOH . U 4 HOH B 45 384 148 HOH HOH . U 4 HOH B 46 385 151 HOH HOH . U 4 HOH B 47 386 163 HOH HOH . U 4 HOH B 48 387 168 HOH HOH . U 4 HOH B 49 388 175 HOH HOH . U 4 HOH B 50 389 178 HOH HOH . U 4 HOH B 51 390 182 HOH HOH . U 4 HOH B 52 391 186 HOH HOH . U 4 HOH B 53 392 187 HOH HOH . U 4 HOH B 54 393 188 HOH HOH . U 4 HOH B 55 394 195 HOH HOH . U 4 HOH B 56 395 200 HOH HOH . U 4 HOH B 57 396 214 HOH HOH . U 4 HOH B 58 397 217 HOH HOH . U 4 HOH B 59 398 220 HOH HOH . U 4 HOH B 60 399 226 HOH HOH . U 4 HOH B 61 400 231 HOH HOH . U 4 HOH B 62 401 236 HOH HOH . U 4 HOH B 63 402 237 HOH HOH . U 4 HOH B 64 403 243 HOH HOH . U 4 HOH B 65 404 248 HOH HOH . U 4 HOH B 66 405 253 HOH HOH . U 4 HOH B 67 406 256 HOH HOH . U 4 HOH B 68 407 261 HOH HOH . U 4 HOH B 69 408 262 HOH HOH . U 4 HOH B 70 409 269 HOH HOH . U 4 HOH B 71 410 270 HOH HOH . U 4 HOH B 72 411 271 HOH HOH . U 4 HOH B 73 412 281 HOH HOH . U 4 HOH B 74 413 283 HOH HOH . U 4 HOH B 75 414 284 HOH HOH . U 4 HOH B 76 415 301 HOH HOH . U 4 HOH B 77 416 306 HOH HOH . U 4 HOH B 78 417 309 HOH HOH . U 4 HOH B 79 418 310 HOH HOH . U 4 HOH B 80 419 311 HOH HOH . U 4 HOH B 81 420 312 HOH HOH . U 4 HOH B 82 421 315 HOH HOH . U 4 HOH B 83 422 317 HOH HOH . U 4 HOH B 84 423 318 HOH HOH . U 4 HOH B 85 424 319 HOH HOH . V 4 HOH C 1 338 2 HOH HOH . V 4 HOH C 2 339 4 HOH HOH . V 4 HOH C 3 340 6 HOH HOH . V 4 HOH C 4 341 7 HOH HOH . V 4 HOH C 5 342 15 HOH HOH . V 4 HOH C 6 343 21 HOH HOH . V 4 HOH C 7 344 24 HOH HOH . V 4 HOH C 8 345 26 HOH HOH . V 4 HOH C 9 346 29 HOH HOH . V 4 HOH C 10 347 31 HOH HOH . V 4 HOH C 11 348 33 HOH HOH . V 4 HOH C 12 349 34 HOH HOH . V 4 HOH C 13 350 44 HOH HOH . V 4 HOH C 14 351 71 HOH HOH . V 4 HOH C 15 352 74 HOH HOH . V 4 HOH C 16 353 80 HOH HOH . V 4 HOH C 17 354 90 HOH HOH . V 4 HOH C 18 355 104 HOH HOH . V 4 HOH C 19 356 107 HOH HOH . V 4 HOH C 20 357 108 HOH HOH . V 4 HOH C 21 358 115 HOH HOH . V 4 HOH C 22 359 116 HOH HOH . V 4 HOH C 23 360 118 HOH HOH . V 4 HOH C 24 361 119 HOH HOH . V 4 HOH C 25 362 123 HOH HOH . V 4 HOH C 26 363 128 HOH HOH . V 4 HOH C 27 364 129 HOH HOH . V 4 HOH C 28 365 130 HOH HOH . V 4 HOH C 29 366 132 HOH HOH . V 4 HOH C 30 367 137 HOH HOH . V 4 HOH C 31 368 141 HOH HOH . V 4 HOH C 32 369 142 HOH HOH . V 4 HOH C 33 370 146 HOH HOH . V 4 HOH C 34 371 150 HOH HOH . V 4 HOH C 35 372 156 HOH HOH . V 4 HOH C 36 373 157 HOH HOH . V 4 HOH C 37 374 158 HOH HOH . V 4 HOH C 38 375 162 HOH HOH . V 4 HOH C 39 376 165 HOH HOH . V 4 HOH C 40 377 166 HOH HOH . V 4 HOH C 41 378 167 HOH HOH . V 4 HOH C 42 379 183 HOH HOH . V 4 HOH C 43 380 202 HOH HOH . V 4 HOH C 44 381 208 HOH HOH . V 4 HOH C 45 382 209 HOH HOH . V 4 HOH C 46 383 224 HOH HOH . V 4 HOH C 47 384 235 HOH HOH . V 4 HOH C 48 385 245 HOH HOH . V 4 HOH C 49 386 246 HOH HOH . V 4 HOH C 50 387 247 HOH HOH . V 4 HOH C 51 388 266 HOH HOH . V 4 HOH C 52 389 267 HOH HOH . V 4 HOH C 53 390 278 HOH HOH . V 4 HOH C 54 391 286 HOH HOH . V 4 HOH C 55 392 291 HOH HOH . V 4 HOH C 56 393 292 HOH HOH . V 4 HOH C 57 394 293 HOH HOH . V 4 HOH C 58 395 294 HOH HOH . V 4 HOH C 59 396 313 HOH HOH . V 4 HOH C 60 397 316 HOH HOH . V 4 HOH C 61 398 320 HOH HOH . V 4 HOH C 62 399 322 HOH HOH . V 4 HOH C 63 452 304 HOH HOH . W 4 HOH D 1 337 36 HOH HOH . W 4 HOH D 2 338 39 HOH HOH . W 4 HOH D 3 339 50 HOH HOH . W 4 HOH D 4 340 51 HOH HOH . W 4 HOH D 5 341 56 HOH HOH . W 4 HOH D 6 342 65 HOH HOH . W 4 HOH D 7 343 81 HOH HOH . W 4 HOH D 8 344 82 HOH HOH . W 4 HOH D 9 345 87 HOH HOH . W 4 HOH D 10 346 92 HOH HOH . W 4 HOH D 11 347 94 HOH HOH . W 4 HOH D 12 348 110 HOH HOH . W 4 HOH D 13 349 143 HOH HOH . W 4 HOH D 14 350 145 HOH HOH . W 4 HOH D 15 351 153 HOH HOH . W 4 HOH D 16 352 169 HOH HOH . W 4 HOH D 17 353 171 HOH HOH . W 4 HOH D 18 354 173 HOH HOH . W 4 HOH D 19 355 176 HOH HOH . W 4 HOH D 20 356 180 HOH HOH . W 4 HOH D 21 357 185 HOH HOH . W 4 HOH D 22 358 190 HOH HOH . W 4 HOH D 23 359 197 HOH HOH . W 4 HOH D 24 360 199 HOH HOH . W 4 HOH D 25 361 203 HOH HOH . W 4 HOH D 26 362 219 HOH HOH . W 4 HOH D 27 363 221 HOH HOH . W 4 HOH D 28 364 223 HOH HOH . W 4 HOH D 29 365 227 HOH HOH . W 4 HOH D 30 366 239 HOH HOH . W 4 HOH D 31 367 240 HOH HOH . W 4 HOH D 32 368 252 HOH HOH . W 4 HOH D 33 369 257 HOH HOH . W 4 HOH D 34 370 258 HOH HOH . W 4 HOH D 35 371 260 HOH HOH . W 4 HOH D 36 372 265 HOH HOH . W 4 HOH D 37 373 268 HOH HOH . W 4 HOH D 38 374 280 HOH HOH . W 4 HOH D 39 375 288 HOH HOH . W 4 HOH D 40 376 295 HOH HOH . W 4 HOH D 41 377 296 HOH HOH . W 4 HOH D 42 378 297 HOH HOH . W 4 HOH D 43 379 298 HOH HOH . W 4 HOH D 44 380 299 HOH HOH . W 4 HOH D 45 381 300 HOH HOH . W 4 HOH D 46 382 307 HOH HOH . W 4 HOH D 47 383 308 HOH HOH . W 4 HOH D 48 384 314 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . L 3 13.703 -22.063 26.18 1 52.29 ? C1 EDO 337 B 1 HETATM 2 O O1 EDO . . . L 3 14.227 -21.113 27.113 1 52.09 ? O1 EDO 337 B 1 HETATM 3 C C2 EDO . . . L 3 14.831 -22.559 25.282 1 52.28 ? C2 EDO 337 B 1 HETATM 4 O O2 EDO . . . L 3 14.257 -23.178 24.126 1 52.19 ? O2 EDO 337 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #