data_3AIM
#
_model_server_result.job_id            7DyH2f4nHokyOWZvzvzRKw 
_model_server_result.datetime_utc      '2024-11-06 02:59:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3aim 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    3AIM 
#
_exptl.entry_id    3AIM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.74 
_cell.angle_gamma         90 
_cell.entry_id            3AIM 
_cell.length_a            76.213 
_cell.length_b            114.835 
_cell.length_c            102.219 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3AIM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
PISA dimeric 2 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,Q,R,S,T,W 1 1 
B,C,H,I,J,K,L,M,N,O,P,U,V 2 1 
A,B,E,F,G,H,I,J,K,L,T,U 3 1 
C,D,M,N,O,P,Q,R,S,V,W 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 120 A CYS 100 1_555 A SG CYS 122 A CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf2 B SG CYS 120 B CYS 100 1_555 B SG CYS 122 B CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf3 D SG CYS 120 D CYS 100 1_555 D SG CYS 122 D CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 237 n n 
C1 H11 MPD sing 238 n n 
C1 H12 MPD sing 239 n n 
C1 H13 MPD sing 240 n n 
C2 O2 MPD sing 241 n n 
C2 CM MPD sing 242 n n 
C2 C3 MPD sing 243 n n 
O2 HO2 MPD sing 244 n n 
CM HM1 MPD sing 245 n n 
CM HM2 MPD sing 246 n n 
CM HM3 MPD sing 247 n n 
C3 C4 MPD sing 248 n n 
C3 H31 MPD sing 249 n n 
C3 H32 MPD sing 250 n n 
C4 O4 MPD sing 251 n n 
C4 C5 MPD sing 252 n n 
C4 H4 MPD sing 253 n n 
O4 HO4 MPD sing 254 n n 
C5 H51 MPD sing 255 n n 
C5 H52 MPD sing 256 n n 
C5 H53 MPD sing 257 n n 
#
_atom_sites.entry_id                     3AIM 
_atom_sites.fract_transf_matrix[1][1]    0.013121 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004708 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008708 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010394 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MPD A 1 304 1 MPD MPD . 
F 3 PO4 A 1 305 1 PO4 PO4 . 
G 3 PO4 A 1 306 2 PO4 PO4 . 
H 2 MPD B 1 304 304 MPD MPD . 
I 2 MPD B 1 305 305 MPD MPD . 
J 4 MRD B 1 306 306 MRD MPD . 
K 4 MRD B 1 307 1 MRD MPD . 
L 3 PO4 B 1 308 1 PO4 PO4 . 
M 4 MRD C 1 304 1 MRD MPD . 
N 4 MRD C 1 305 1 MRD MPD . 
O 3 PO4 C 1 306 1 PO4 PO4 . 
P 4 MRD C 1 307 1 MRD MPD . 
Q 4 MRD D 1 304 1 MRD MPD . 
R 3 PO4 D 1 305 3 PO4 PO4 . 
S 4 MRD D 1 306 1 MRD MPD . 
T 5 HOH A 1 307 2 HOH HOH . 
T 5 HOH A 2 308 4 HOH HOH . 
T 5 HOH A 3 309 5 HOH HOH . 
T 5 HOH A 4 310 7 HOH HOH . 
T 5 HOH A 5 311 12 HOH HOH . 
T 5 HOH A 6 312 13 HOH HOH . 
T 5 HOH A 7 313 17 HOH HOH . 
T 5 HOH A 8 314 33 HOH HOH . 
T 5 HOH A 9 315 55 HOH HOH . 
T 5 HOH A 10 316 67 HOH HOH . 
T 5 HOH A 11 317 68 HOH HOH . 
T 5 HOH A 12 318 69 HOH HOH . 
T 5 HOH A 13 319 77 HOH HOH . 
T 5 HOH A 14 320 79 HOH HOH . 
T 5 HOH A 15 321 95 HOH HOH . 
T 5 HOH A 16 322 119 HOH HOH . 
T 5 HOH A 17 323 258 HOH HOH . 
T 5 HOH A 18 324 20 HOH HOH . 
T 5 HOH A 19 325 26 HOH HOH . 
T 5 HOH A 20 326 9 HOH HOH . 
T 5 HOH A 21 337 337 HOH HOH . 
T 5 HOH A 22 385 385 HOH HOH . 
T 5 HOH A 23 458 458 HOH HOH . 
T 5 HOH A 24 524 524 HOH HOH . 
T 5 HOH A 25 525 525 HOH HOH . 
T 5 HOH A 26 526 526 HOH HOH . 
T 5 HOH A 27 532 532 HOH HOH . 
T 5 HOH A 28 541 541 HOH HOH . 
T 5 HOH A 29 542 542 HOH HOH . 
T 5 HOH A 30 543 543 HOH HOH . 
T 5 HOH A 31 544 544 HOH HOH . 
T 5 HOH A 32 550 550 HOH HOH . 
T 5 HOH A 33 551 551 HOH HOH . 
T 5 HOH A 34 552 552 HOH HOH . 
T 5 HOH A 35 559 559 HOH HOH . 
T 5 HOH A 36 561 561 HOH HOH . 
T 5 HOH A 37 562 562 HOH HOH . 
T 5 HOH A 38 569 569 HOH HOH . 
T 5 HOH A 39 573 573 HOH HOH . 
T 5 HOH A 40 576 576 HOH HOH . 
T 5 HOH A 41 578 578 HOH HOH . 
T 5 HOH A 42 579 579 HOH HOH . 
T 5 HOH A 43 586 586 HOH HOH . 
T 5 HOH A 44 590 590 HOH HOH . 
T 5 HOH A 45 593 593 HOH HOH . 
T 5 HOH A 46 600 600 HOH HOH . 
T 5 HOH A 47 604 604 HOH HOH . 
T 5 HOH A 48 605 605 HOH HOH . 
T 5 HOH A 49 608 608 HOH HOH . 
T 5 HOH A 50 617 617 HOH HOH . 
T 5 HOH A 51 618 618 HOH HOH . 
U 5 HOH B 1 309 1 HOH HOH . 
U 5 HOH B 2 310 6 HOH HOH . 
U 5 HOH B 3 311 24 HOH HOH . 
U 5 HOH B 4 312 28 HOH HOH . 
U 5 HOH B 5 313 40 HOH HOH . 
U 5 HOH B 6 314 53 HOH HOH . 
U 5 HOH B 7 315 62 HOH HOH . 
U 5 HOH B 8 316 103 HOH HOH . 
U 5 HOH B 9 317 144 HOH HOH . 
U 5 HOH B 10 318 186 HOH HOH . 
U 5 HOH B 11 319 229 HOH HOH . 
U 5 HOH B 12 320 288 HOH HOH . 
U 5 HOH B 13 321 231 HOH HOH . 
U 5 HOH B 14 322 243 HOH HOH . 
U 5 HOH B 15 323 11 HOH HOH . 
U 5 HOH B 16 331 331 HOH HOH . 
U 5 HOH B 17 368 368 HOH HOH . 
U 5 HOH B 18 530 530 HOH HOH . 
U 5 HOH B 19 533 533 HOH HOH . 
U 5 HOH B 20 534 534 HOH HOH . 
U 5 HOH B 21 535 535 HOH HOH . 
U 5 HOH B 22 536 536 HOH HOH . 
U 5 HOH B 23 537 537 HOH HOH . 
U 5 HOH B 24 546 546 HOH HOH . 
U 5 HOH B 25 555 555 HOH HOH . 
U 5 HOH B 26 566 566 HOH HOH . 
U 5 HOH B 27 570 570 HOH HOH . 
U 5 HOH B 28 571 571 HOH HOH . 
U 5 HOH B 29 580 580 HOH HOH . 
U 5 HOH B 30 581 581 HOH HOH . 
U 5 HOH B 31 584 584 HOH HOH . 
U 5 HOH B 32 587 587 HOH HOH . 
U 5 HOH B 33 591 591 HOH HOH . 
U 5 HOH B 34 594 594 HOH HOH . 
U 5 HOH B 35 598 598 HOH HOH . 
U 5 HOH B 36 603 603 HOH HOH . 
U 5 HOH B 37 607 607 HOH HOH . 
U 5 HOH B 38 611 611 HOH HOH . 
U 5 HOH B 39 614 614 HOH HOH . 
U 5 HOH B 40 615 615 HOH HOH . 
U 5 HOH B 41 616 616 HOH HOH . 
U 5 HOH B 42 619 619 HOH HOH . 
U 5 HOH B 43 620 620 HOH HOH . 
U 5 HOH B 44 621 621 HOH HOH . 
V 5 HOH C 1 308 3 HOH HOH . 
V 5 HOH C 2 309 30 HOH HOH . 
V 5 HOH C 3 310 34 HOH HOH . 
V 5 HOH C 4 311 54 HOH HOH . 
V 5 HOH C 5 312 165 HOH HOH . 
V 5 HOH C 6 313 185 HOH HOH . 
V 5 HOH C 7 314 192 HOH HOH . 
V 5 HOH C 8 315 245 HOH HOH . 
V 5 HOH C 9 316 61 HOH HOH . 
V 5 HOH C 10 317 73 HOH HOH . 
V 5 HOH C 11 318 245 HOH HOH . 
V 5 HOH C 12 462 462 HOH HOH . 
V 5 HOH C 13 467 467 HOH HOH . 
V 5 HOH C 14 513 513 HOH HOH . 
V 5 HOH C 15 519 519 HOH HOH . 
V 5 HOH C 16 527 527 HOH HOH . 
V 5 HOH C 17 540 540 HOH HOH . 
V 5 HOH C 18 545 545 HOH HOH . 
V 5 HOH C 19 547 547 HOH HOH . 
V 5 HOH C 20 548 548 HOH HOH . 
V 5 HOH C 21 549 549 HOH HOH . 
V 5 HOH C 22 557 557 HOH HOH . 
V 5 HOH C 23 560 560 HOH HOH . 
V 5 HOH C 24 567 567 HOH HOH . 
V 5 HOH C 25 568 568 HOH HOH . 
V 5 HOH C 26 574 574 HOH HOH . 
V 5 HOH C 27 575 575 HOH HOH . 
V 5 HOH C 28 577 577 HOH HOH . 
V 5 HOH C 29 589 589 HOH HOH . 
V 5 HOH C 30 592 592 HOH HOH . 
V 5 HOH C 31 595 595 HOH HOH . 
V 5 HOH C 32 597 597 HOH HOH . 
V 5 HOH C 33 601 601 HOH HOH . 
V 5 HOH C 34 612 612 HOH HOH . 
V 5 HOH C 35 613 613 HOH HOH . 
V 5 HOH C 36 622 622 HOH HOH . 
V 5 HOH C 37 623 623 HOH HOH . 
V 5 HOH C 38 625 625 HOH HOH . 
W 5 HOH D 1 307 8 HOH HOH . 
W 5 HOH D 2 308 29 HOH HOH . 
W 5 HOH D 3 309 98 HOH HOH . 
W 5 HOH D 4 310 133 HOH HOH . 
W 5 HOH D 5 311 206 HOH HOH . 
W 5 HOH D 6 312 220 HOH HOH . 
W 5 HOH D 7 314 314 HOH HOH . 
W 5 HOH D 8 528 528 HOH HOH . 
W 5 HOH D 9 538 538 HOH HOH . 
W 5 HOH D 10 539 539 HOH HOH . 
W 5 HOH D 11 553 553 HOH HOH . 
W 5 HOH D 12 554 554 HOH HOH . 
W 5 HOH D 13 556 556 HOH HOH . 
W 5 HOH D 14 558 558 HOH HOH . 
W 5 HOH D 15 563 563 HOH HOH . 
W 5 HOH D 16 564 564 HOH HOH . 
W 5 HOH D 17 565 565 HOH HOH . 
W 5 HOH D 18 582 582 HOH HOH . 
W 5 HOH D 19 583 583 HOH HOH . 
W 5 HOH D 20 588 588 HOH HOH . 
W 5 HOH D 21 596 596 HOH HOH . 
W 5 HOH D 22 606 606 HOH HOH . 
W 5 HOH D 23 610 610 HOH HOH . 
W 5 HOH D 24 624 624 HOH HOH . 
W 5 HOH D 25 626 626 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . E 2 -9.024 15.291 20.687 1 25.55 ? C1 MPD 304 A 1 
HETATM 2 C C2 MPD . . . E 2 -10.371 15.992 20.496 1 29.76 ? C2 MPD 304 A 1 
HETATM 3 O O2 MPD . . . E 2 -11.065 15.394 19.369 1 30.92 ? O2 MPD 304 A 1 
HETATM 4 C CM MPD . . . E 2 -11.225 15.812 21.737 1 28.92 ? CM MPD 304 A 1 
HETATM 5 C C3 MPD . . . E 2 -10.262 17.479 20.2 1 23.31 ? C3 MPD 304 A 1 
HETATM 6 C C4 MPD . . . E 2 -8.884 18.079 20.406 1 26.7 ? C4 MPD 304 A 1 
HETATM 7 O O4 MPD . . . E 2 -8.914 19.38 19.866 1 28.71 ? O4 MPD 304 A 1 
HETATM 8 C C5 MPD . . . E 2 -8.532 18.171 21.88 1 23.15 ? C5 MPD 304 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#