data_3AIM # _model_server_result.job_id wIFiE1k7uO2qHHMr1Tjr3w _model_server_result.datetime_utc '2024-11-06 03:14:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3aim # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":307}' # _entry.id 3AIM # _exptl.entry_id 3AIM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-2-METHYLPENTANE-2,4-DIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.74 _cell.angle_gamma 90 _cell.entry_id 3AIM _cell.length_a 76.213 _cell.length_b 114.835 _cell.length_c 102.219 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AIM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,Q,R,S,T,W 1 1 B,C,H,I,J,K,L,M,N,O,P,U,V 2 1 A,B,E,F,G,H,I,J,K,L,T,U 3 1 C,D,M,N,O,P,Q,R,S,V,W 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 M N N ? 4 N N N ? 4 P N N ? 4 Q N N ? 4 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 120 A CYS 100 1_555 A SG CYS 122 A CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf2 B SG CYS 120 B CYS 100 1_555 B SG CYS 122 B CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf3 D SG CYS 120 D CYS 100 1_555 D SG CYS 122 D CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MRD _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-2-METHYLPENTANE-2,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MRD sing 258 n n C1 H1C1 MRD sing 259 n n C1 H1C2 MRD sing 260 n n C1 H1C3 MRD sing 261 n n C2 O2 MRD sing 262 n n C2 CM MRD sing 263 n n C2 C3 MRD sing 264 n n O2 H2 MRD sing 265 n n CM HMC1 MRD sing 266 n n CM HMC2 MRD sing 267 n n CM HMC3 MRD sing 268 n n C3 C4 MRD sing 269 n n C3 H3C1 MRD sing 270 n n C3 H3C2 MRD sing 271 n n C4 O4 MRD sing 272 n n C4 C5 MRD sing 273 n n C4 H4 MRD sing 274 n n O4 HA MRD sing 275 n n C5 H5C1 MRD sing 276 n n C5 H5C2 MRD sing 277 n n C5 H5C3 MRD sing 278 n n # _atom_sites.entry_id 3AIM _atom_sites.fract_transf_matrix[1][1] 0.013121 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004708 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008708 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010394 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MPD A 1 304 1 MPD MPD . F 3 PO4 A 1 305 1 PO4 PO4 . G 3 PO4 A 1 306 2 PO4 PO4 . H 2 MPD B 1 304 304 MPD MPD . I 2 MPD B 1 305 305 MPD MPD . J 4 MRD B 1 306 306 MRD MPD . K 4 MRD B 1 307 1 MRD MPD . L 3 PO4 B 1 308 1 PO4 PO4 . M 4 MRD C 1 304 1 MRD MPD . N 4 MRD C 1 305 1 MRD MPD . O 3 PO4 C 1 306 1 PO4 PO4 . P 4 MRD C 1 307 1 MRD MPD . Q 4 MRD D 1 304 1 MRD MPD . R 3 PO4 D 1 305 3 PO4 PO4 . S 4 MRD D 1 306 1 MRD MPD . T 5 HOH A 1 307 2 HOH HOH . T 5 HOH A 2 308 4 HOH HOH . T 5 HOH A 3 309 5 HOH HOH . T 5 HOH A 4 310 7 HOH HOH . T 5 HOH A 5 311 12 HOH HOH . T 5 HOH A 6 312 13 HOH HOH . T 5 HOH A 7 313 17 HOH HOH . T 5 HOH A 8 314 33 HOH HOH . T 5 HOH A 9 315 55 HOH HOH . T 5 HOH A 10 316 67 HOH HOH . T 5 HOH A 11 317 68 HOH HOH . T 5 HOH A 12 318 69 HOH HOH . T 5 HOH A 13 319 77 HOH HOH . T 5 HOH A 14 320 79 HOH HOH . T 5 HOH A 15 321 95 HOH HOH . T 5 HOH A 16 322 119 HOH HOH . T 5 HOH A 17 323 258 HOH HOH . T 5 HOH A 18 324 20 HOH HOH . T 5 HOH A 19 325 26 HOH HOH . T 5 HOH A 20 326 9 HOH HOH . T 5 HOH A 21 337 337 HOH HOH . T 5 HOH A 22 385 385 HOH HOH . T 5 HOH A 23 458 458 HOH HOH . T 5 HOH A 24 524 524 HOH HOH . T 5 HOH A 25 525 525 HOH HOH . T 5 HOH A 26 526 526 HOH HOH . T 5 HOH A 27 532 532 HOH HOH . T 5 HOH A 28 541 541 HOH HOH . T 5 HOH A 29 542 542 HOH HOH . T 5 HOH A 30 543 543 HOH HOH . T 5 HOH A 31 544 544 HOH HOH . T 5 HOH A 32 550 550 HOH HOH . T 5 HOH A 33 551 551 HOH HOH . T 5 HOH A 34 552 552 HOH HOH . T 5 HOH A 35 559 559 HOH HOH . T 5 HOH A 36 561 561 HOH HOH . T 5 HOH A 37 562 562 HOH HOH . T 5 HOH A 38 569 569 HOH HOH . T 5 HOH A 39 573 573 HOH HOH . T 5 HOH A 40 576 576 HOH HOH . T 5 HOH A 41 578 578 HOH HOH . T 5 HOH A 42 579 579 HOH HOH . T 5 HOH A 43 586 586 HOH HOH . T 5 HOH A 44 590 590 HOH HOH . T 5 HOH A 45 593 593 HOH HOH . T 5 HOH A 46 600 600 HOH HOH . T 5 HOH A 47 604 604 HOH HOH . T 5 HOH A 48 605 605 HOH HOH . T 5 HOH A 49 608 608 HOH HOH . T 5 HOH A 50 617 617 HOH HOH . T 5 HOH A 51 618 618 HOH HOH . U 5 HOH B 1 309 1 HOH HOH . U 5 HOH B 2 310 6 HOH HOH . U 5 HOH B 3 311 24 HOH HOH . U 5 HOH B 4 312 28 HOH HOH . U 5 HOH B 5 313 40 HOH HOH . U 5 HOH B 6 314 53 HOH HOH . U 5 HOH B 7 315 62 HOH HOH . U 5 HOH B 8 316 103 HOH HOH . U 5 HOH B 9 317 144 HOH HOH . U 5 HOH B 10 318 186 HOH HOH . U 5 HOH B 11 319 229 HOH HOH . U 5 HOH B 12 320 288 HOH HOH . U 5 HOH B 13 321 231 HOH HOH . U 5 HOH B 14 322 243 HOH HOH . U 5 HOH B 15 323 11 HOH HOH . U 5 HOH B 16 331 331 HOH HOH . U 5 HOH B 17 368 368 HOH HOH . U 5 HOH B 18 530 530 HOH HOH . U 5 HOH B 19 533 533 HOH HOH . U 5 HOH B 20 534 534 HOH HOH . U 5 HOH B 21 535 535 HOH HOH . U 5 HOH B 22 536 536 HOH HOH . U 5 HOH B 23 537 537 HOH HOH . U 5 HOH B 24 546 546 HOH HOH . U 5 HOH B 25 555 555 HOH HOH . U 5 HOH B 26 566 566 HOH HOH . U 5 HOH B 27 570 570 HOH HOH . U 5 HOH B 28 571 571 HOH HOH . U 5 HOH B 29 580 580 HOH HOH . U 5 HOH B 30 581 581 HOH HOH . U 5 HOH B 31 584 584 HOH HOH . U 5 HOH B 32 587 587 HOH HOH . U 5 HOH B 33 591 591 HOH HOH . U 5 HOH B 34 594 594 HOH HOH . U 5 HOH B 35 598 598 HOH HOH . U 5 HOH B 36 603 603 HOH HOH . U 5 HOH B 37 607 607 HOH HOH . U 5 HOH B 38 611 611 HOH HOH . U 5 HOH B 39 614 614 HOH HOH . U 5 HOH B 40 615 615 HOH HOH . U 5 HOH B 41 616 616 HOH HOH . U 5 HOH B 42 619 619 HOH HOH . U 5 HOH B 43 620 620 HOH HOH . U 5 HOH B 44 621 621 HOH HOH . V 5 HOH C 1 308 3 HOH HOH . V 5 HOH C 2 309 30 HOH HOH . V 5 HOH C 3 310 34 HOH HOH . V 5 HOH C 4 311 54 HOH HOH . V 5 HOH C 5 312 165 HOH HOH . V 5 HOH C 6 313 185 HOH HOH . V 5 HOH C 7 314 192 HOH HOH . V 5 HOH C 8 315 245 HOH HOH . V 5 HOH C 9 316 61 HOH HOH . V 5 HOH C 10 317 73 HOH HOH . V 5 HOH C 11 318 245 HOH HOH . V 5 HOH C 12 462 462 HOH HOH . V 5 HOH C 13 467 467 HOH HOH . V 5 HOH C 14 513 513 HOH HOH . V 5 HOH C 15 519 519 HOH HOH . V 5 HOH C 16 527 527 HOH HOH . V 5 HOH C 17 540 540 HOH HOH . V 5 HOH C 18 545 545 HOH HOH . V 5 HOH C 19 547 547 HOH HOH . V 5 HOH C 20 548 548 HOH HOH . V 5 HOH C 21 549 549 HOH HOH . V 5 HOH C 22 557 557 HOH HOH . V 5 HOH C 23 560 560 HOH HOH . V 5 HOH C 24 567 567 HOH HOH . V 5 HOH C 25 568 568 HOH HOH . V 5 HOH C 26 574 574 HOH HOH . V 5 HOH C 27 575 575 HOH HOH . V 5 HOH C 28 577 577 HOH HOH . V 5 HOH C 29 589 589 HOH HOH . V 5 HOH C 30 592 592 HOH HOH . V 5 HOH C 31 595 595 HOH HOH . V 5 HOH C 32 597 597 HOH HOH . V 5 HOH C 33 601 601 HOH HOH . V 5 HOH C 34 612 612 HOH HOH . V 5 HOH C 35 613 613 HOH HOH . V 5 HOH C 36 622 622 HOH HOH . V 5 HOH C 37 623 623 HOH HOH . V 5 HOH C 38 625 625 HOH HOH . W 5 HOH D 1 307 8 HOH HOH . W 5 HOH D 2 308 29 HOH HOH . W 5 HOH D 3 309 98 HOH HOH . W 5 HOH D 4 310 133 HOH HOH . W 5 HOH D 5 311 206 HOH HOH . W 5 HOH D 6 312 220 HOH HOH . W 5 HOH D 7 314 314 HOH HOH . W 5 HOH D 8 528 528 HOH HOH . W 5 HOH D 9 538 538 HOH HOH . W 5 HOH D 10 539 539 HOH HOH . W 5 HOH D 11 553 553 HOH HOH . W 5 HOH D 12 554 554 HOH HOH . W 5 HOH D 13 556 556 HOH HOH . W 5 HOH D 14 558 558 HOH HOH . W 5 HOH D 15 563 563 HOH HOH . W 5 HOH D 16 564 564 HOH HOH . W 5 HOH D 17 565 565 HOH HOH . W 5 HOH D 18 582 582 HOH HOH . W 5 HOH D 19 583 583 HOH HOH . W 5 HOH D 20 588 588 HOH HOH . W 5 HOH D 21 596 596 HOH HOH . W 5 HOH D 22 606 606 HOH HOH . W 5 HOH D 23 610 610 HOH HOH . W 5 HOH D 24 624 624 HOH HOH . W 5 HOH D 25 626 626 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRD . . . K 4 3.015 21.326 24.175 1 49.16 ? C1 MRD 307 B 1 HETATM 2 C C2 MRD . . . K 4 3.404 22.58 23.395 1 48.8 ? C2 MRD 307 B 1 HETATM 3 O O2 MRD . . . K 4 2.301 22.946 22.531 1 50.77 ? O2 MRD 307 B 1 HETATM 4 C CM MRD . . . K 4 3.68 23.737 24.341 1 48.64 ? CM MRD 307 B 1 HETATM 5 C C3 MRD . . . K 4 4.642 22.326 22.546 1 48.34 ? C3 MRD 307 B 1 HETATM 6 C C4 MRD . . . K 4 4.556 23.063 21.218 1 49.69 ? C4 MRD 307 B 1 HETATM 7 O O4 MRD . . . K 4 3.649 22.396 20.37 1 48.31 ? O4 MRD 307 B 1 HETATM 8 C C5 MRD . . . K 4 5.925 23.114 20.551 1 51.75 ? C5 MRD 307 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #