data_3AJ4 # _model_server_result.job_id HezvoSZnniHUQvVJpBj5wA _model_server_result.datetime_utc '2024-11-24 15:39:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3aj4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":112}' # _entry.id 3AJ4 # _exptl.entry_id 3AJ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.2 _cell.angle_gamma 90 _cell.entry_id 3AJ4 _cell.length_a 31.747 _cell.length_b 48.449 _cell.length_c 64.323 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AJ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3AJ4 _atom_sites.fract_transf_matrix[1][1] 0.031499 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00121 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02064 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015558 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SEP A 1 111 1 SEP SEP . D 3 EDO A 1 112 2 EDO EDO . E 3 EDO B 1 111 1 EDO EDO . F 3 EDO B 1 112 3 EDO EDO . G 4 HOH A 1 113 113 HOH HOH . G 4 HOH A 2 114 2 HOH HOH . G 4 HOH A 3 115 115 HOH HOH . G 4 HOH A 4 116 6 HOH HOH . G 4 HOH A 5 117 7 HOH HOH . G 4 HOH A 6 118 8 HOH HOH . G 4 HOH A 7 119 119 HOH HOH . G 4 HOH A 8 120 120 HOH HOH . G 4 HOH A 9 121 12 HOH HOH . G 4 HOH A 10 122 122 HOH HOH . G 4 HOH A 11 123 14 HOH HOH . G 4 HOH A 12 124 124 HOH HOH . G 4 HOH A 13 125 125 HOH HOH . G 4 HOH A 14 126 15 HOH HOH . G 4 HOH A 15 127 127 HOH HOH . G 4 HOH A 16 128 128 HOH HOH . G 4 HOH A 17 129 16 HOH HOH . G 4 HOH A 18 130 17 HOH HOH . G 4 HOH A 19 131 131 HOH HOH . G 4 HOH A 20 132 19 HOH HOH . G 4 HOH A 21 133 133 HOH HOH . G 4 HOH A 22 134 21 HOH HOH . G 4 HOH A 23 135 135 HOH HOH . G 4 HOH A 24 136 136 HOH HOH . G 4 HOH A 25 137 23 HOH HOH . G 4 HOH A 26 138 138 HOH HOH . G 4 HOH A 27 139 139 HOH HOH . G 4 HOH A 28 140 140 HOH HOH . G 4 HOH A 29 141 24 HOH HOH . G 4 HOH A 30 142 142 HOH HOH . G 4 HOH A 31 143 25 HOH HOH . G 4 HOH A 32 144 144 HOH HOH . G 4 HOH A 33 145 145 HOH HOH . G 4 HOH A 34 146 146 HOH HOH . G 4 HOH A 35 147 147 HOH HOH . G 4 HOH A 36 148 26 HOH HOH . G 4 HOH A 37 149 27 HOH HOH . G 4 HOH A 38 150 150 HOH HOH . G 4 HOH A 39 151 28 HOH HOH . G 4 HOH A 40 152 152 HOH HOH . G 4 HOH A 41 153 29 HOH HOH . G 4 HOH A 42 154 34 HOH HOH . G 4 HOH A 43 155 35 HOH HOH . G 4 HOH A 44 156 36 HOH HOH . G 4 HOH A 45 157 157 HOH HOH . G 4 HOH A 46 158 158 HOH HOH . G 4 HOH A 47 159 159 HOH HOH . G 4 HOH A 48 160 37 HOH HOH . G 4 HOH A 49 161 38 HOH HOH . G 4 HOH A 50 162 41 HOH HOH . G 4 HOH A 51 163 43 HOH HOH . G 4 HOH A 52 164 45 HOH HOH . G 4 HOH A 53 165 48 HOH HOH . G 4 HOH A 54 166 166 HOH HOH . G 4 HOH A 55 167 50 HOH HOH . G 4 HOH A 56 168 168 HOH HOH . G 4 HOH A 57 169 52 HOH HOH . G 4 HOH A 58 170 53 HOH HOH . G 4 HOH A 59 171 171 HOH HOH . G 4 HOH A 60 172 172 HOH HOH . G 4 HOH A 61 173 173 HOH HOH . G 4 HOH A 62 174 174 HOH HOH . G 4 HOH A 63 175 175 HOH HOH . G 4 HOH A 64 176 176 HOH HOH . G 4 HOH A 65 177 54 HOH HOH . G 4 HOH A 66 178 55 HOH HOH . G 4 HOH A 67 179 179 HOH HOH . G 4 HOH A 68 180 180 HOH HOH . G 4 HOH A 69 181 181 HOH HOH . G 4 HOH A 70 182 182 HOH HOH . G 4 HOH A 71 183 57 HOH HOH . G 4 HOH A 72 184 58 HOH HOH . G 4 HOH A 73 185 59 HOH HOH . G 4 HOH A 74 186 62 HOH HOH . G 4 HOH A 75 187 187 HOH HOH . G 4 HOH A 76 188 188 HOH HOH . G 4 HOH A 77 189 189 HOH HOH . G 4 HOH A 78 190 190 HOH HOH . G 4 HOH A 79 191 64 HOH HOH . G 4 HOH A 80 192 192 HOH HOH . G 4 HOH A 81 193 193 HOH HOH . G 4 HOH A 82 194 194 HOH HOH . G 4 HOH A 83 195 66 HOH HOH . G 4 HOH A 84 196 196 HOH HOH . G 4 HOH A 85 197 68 HOH HOH . G 4 HOH A 86 198 198 HOH HOH . G 4 HOH A 87 199 199 HOH HOH . G 4 HOH A 88 200 200 HOH HOH . G 4 HOH A 89 201 201 HOH HOH . G 4 HOH A 90 202 202 HOH HOH . G 4 HOH A 91 203 69 HOH HOH . G 4 HOH A 92 204 204 HOH HOH . G 4 HOH A 93 205 205 HOH HOH . G 4 HOH A 94 206 206 HOH HOH . G 4 HOH A 95 207 72 HOH HOH . G 4 HOH A 96 208 73 HOH HOH . G 4 HOH A 97 209 209 HOH HOH . G 4 HOH A 98 210 210 HOH HOH . G 4 HOH A 99 211 74 HOH HOH . G 4 HOH A 100 212 75 HOH HOH . G 4 HOH A 101 213 79 HOH HOH . G 4 HOH A 102 214 84 HOH HOH . G 4 HOH A 103 215 215 HOH HOH . G 4 HOH A 104 216 216 HOH HOH . G 4 HOH A 105 217 217 HOH HOH . G 4 HOH A 106 218 218 HOH HOH . G 4 HOH A 107 219 86 HOH HOH . G 4 HOH A 108 220 220 HOH HOH . G 4 HOH A 109 221 221 HOH HOH . G 4 HOH A 110 222 222 HOH HOH . G 4 HOH A 111 223 89 HOH HOH . G 4 HOH A 112 224 224 HOH HOH . G 4 HOH A 113 225 225 HOH HOH . G 4 HOH A 114 226 226 HOH HOH . G 4 HOH A 115 227 96 HOH HOH . G 4 HOH A 116 228 228 HOH HOH . G 4 HOH A 117 229 229 HOH HOH . G 4 HOH A 118 230 230 HOH HOH . G 4 HOH A 119 231 231 HOH HOH . G 4 HOH A 120 232 97 HOH HOH . G 4 HOH A 121 233 98 HOH HOH . G 4 HOH A 122 234 234 HOH HOH . G 4 HOH A 123 235 235 HOH HOH . G 4 HOH A 124 236 236 HOH HOH . G 4 HOH A 125 237 237 HOH HOH . G 4 HOH A 126 238 238 HOH HOH . G 4 HOH A 127 239 100 HOH HOH . G 4 HOH A 128 240 240 HOH HOH . G 4 HOH A 129 241 241 HOH HOH . G 4 HOH A 130 242 242 HOH HOH . G 4 HOH A 131 243 104 HOH HOH . G 4 HOH A 132 244 105 HOH HOH . G 4 HOH A 133 245 107 HOH HOH . G 4 HOH A 134 246 246 HOH HOH . G 4 HOH A 135 247 108 HOH HOH . G 4 HOH A 136 248 112 HOH HOH . G 4 HOH A 137 250 250 HOH HOH . G 4 HOH A 138 251 251 HOH HOH . G 4 HOH A 139 252 252 HOH HOH . G 4 HOH A 140 253 253 HOH HOH . G 4 HOH A 141 254 254 HOH HOH . G 4 HOH A 142 255 255 HOH HOH . G 4 HOH A 143 269 269 HOH HOH . G 4 HOH A 144 270 270 HOH HOH . G 4 HOH A 145 271 271 HOH HOH . G 4 HOH A 146 272 272 HOH HOH . G 4 HOH A 147 273 273 HOH HOH . G 4 HOH A 148 274 274 HOH HOH . G 4 HOH A 149 277 277 HOH HOH . G 4 HOH A 150 278 278 HOH HOH . G 4 HOH A 151 279 279 HOH HOH . G 4 HOH A 152 280 280 HOH HOH . G 4 HOH A 153 281 281 HOH HOH . G 4 HOH A 154 282 282 HOH HOH . G 4 HOH A 155 283 283 HOH HOH . G 4 HOH A 156 284 284 HOH HOH . G 4 HOH A 157 294 294 HOH HOH . G 4 HOH A 158 295 295 HOH HOH . G 4 HOH A 159 296 296 HOH HOH . G 4 HOH A 160 297 297 HOH HOH . G 4 HOH A 161 298 298 HOH HOH . G 4 HOH A 162 299 299 HOH HOH . G 4 HOH A 163 300 300 HOH HOH . G 4 HOH A 164 301 301 HOH HOH . G 4 HOH A 165 302 302 HOH HOH . G 4 HOH A 166 303 303 HOH HOH . G 4 HOH A 167 307 307 HOH HOH . G 4 HOH A 168 308 308 HOH HOH . H 4 HOH B 1 113 1 HOH HOH . H 4 HOH B 2 114 114 HOH HOH . H 4 HOH B 3 115 3 HOH HOH . H 4 HOH B 4 116 116 HOH HOH . H 4 HOH B 5 117 117 HOH HOH . H 4 HOH B 6 118 118 HOH HOH . H 4 HOH B 7 119 4 HOH HOH . H 4 HOH B 8 120 5 HOH HOH . H 4 HOH B 9 121 121 HOH HOH . H 4 HOH B 10 122 9 HOH HOH . H 4 HOH B 11 123 123 HOH HOH . H 4 HOH B 12 124 10 HOH HOH . H 4 HOH B 13 125 11 HOH HOH . H 4 HOH B 14 126 126 HOH HOH . H 4 HOH B 15 127 13 HOH HOH . H 4 HOH B 16 128 18 HOH HOH . H 4 HOH B 17 129 129 HOH HOH . H 4 HOH B 18 130 130 HOH HOH . H 4 HOH B 19 131 20 HOH HOH . H 4 HOH B 20 132 132 HOH HOH . H 4 HOH B 21 133 22 HOH HOH . H 4 HOH B 22 134 134 HOH HOH . H 4 HOH B 23 135 30 HOH HOH . H 4 HOH B 24 136 31 HOH HOH . H 4 HOH B 25 137 137 HOH HOH . H 4 HOH B 26 138 32 HOH HOH . H 4 HOH B 27 139 33 HOH HOH . H 4 HOH B 28 140 39 HOH HOH . H 4 HOH B 29 141 141 HOH HOH . H 4 HOH B 30 142 40 HOH HOH . H 4 HOH B 31 143 143 HOH HOH . H 4 HOH B 32 144 42 HOH HOH . H 4 HOH B 33 145 44 HOH HOH . H 4 HOH B 34 146 46 HOH HOH . H 4 HOH B 35 147 47 HOH HOH . H 4 HOH B 36 148 148 HOH HOH . H 4 HOH B 37 149 149 HOH HOH . H 4 HOH B 38 150 49 HOH HOH . H 4 HOH B 39 151 151 HOH HOH . H 4 HOH B 40 152 51 HOH HOH . H 4 HOH B 41 153 153 HOH HOH . H 4 HOH B 42 154 154 HOH HOH . H 4 HOH B 43 155 155 HOH HOH . H 4 HOH B 44 156 156 HOH HOH . H 4 HOH B 45 157 56 HOH HOH . H 4 HOH B 46 158 60 HOH HOH . H 4 HOH B 47 159 61 HOH HOH . H 4 HOH B 48 160 160 HOH HOH . H 4 HOH B 49 161 161 HOH HOH . H 4 HOH B 50 162 162 HOH HOH . H 4 HOH B 51 163 163 HOH HOH . H 4 HOH B 52 164 164 HOH HOH . H 4 HOH B 53 165 165 HOH HOH . H 4 HOH B 54 166 63 HOH HOH . H 4 HOH B 55 167 167 HOH HOH . H 4 HOH B 56 168 65 HOH HOH . H 4 HOH B 57 169 169 HOH HOH . H 4 HOH B 58 170 170 HOH HOH . H 4 HOH B 59 171 67 HOH HOH . H 4 HOH B 60 172 70 HOH HOH . H 4 HOH B 61 173 71 HOH HOH . H 4 HOH B 62 174 76 HOH HOH . H 4 HOH B 63 175 77 HOH HOH . H 4 HOH B 64 176 78 HOH HOH . H 4 HOH B 65 177 177 HOH HOH . H 4 HOH B 66 178 178 HOH HOH . H 4 HOH B 67 179 80 HOH HOH . H 4 HOH B 68 180 81 HOH HOH . H 4 HOH B 69 181 82 HOH HOH . H 4 HOH B 70 182 83 HOH HOH . H 4 HOH B 71 183 183 HOH HOH . H 4 HOH B 72 184 184 HOH HOH . H 4 HOH B 73 185 185 HOH HOH . H 4 HOH B 74 186 186 HOH HOH . H 4 HOH B 75 187 85 HOH HOH . H 4 HOH B 76 188 87 HOH HOH . H 4 HOH B 77 189 88 HOH HOH . H 4 HOH B 78 190 90 HOH HOH . H 4 HOH B 79 191 191 HOH HOH . H 4 HOH B 80 192 91 HOH HOH . H 4 HOH B 81 193 92 HOH HOH . H 4 HOH B 82 194 93 HOH HOH . H 4 HOH B 83 195 195 HOH HOH . H 4 HOH B 84 196 94 HOH HOH . H 4 HOH B 85 197 197 HOH HOH . H 4 HOH B 86 198 95 HOH HOH . H 4 HOH B 87 199 99 HOH HOH . H 4 HOH B 88 200 101 HOH HOH . H 4 HOH B 89 201 102 HOH HOH . H 4 HOH B 90 202 103 HOH HOH . H 4 HOH B 91 203 203 HOH HOH . H 4 HOH B 92 204 106 HOH HOH . H 4 HOH B 93 205 109 HOH HOH . H 4 HOH B 94 206 110 HOH HOH . H 4 HOH B 95 207 207 HOH HOH . H 4 HOH B 96 208 208 HOH HOH . H 4 HOH B 97 209 111 HOH HOH . H 4 HOH B 98 211 211 HOH HOH . H 4 HOH B 99 212 212 HOH HOH . H 4 HOH B 100 213 213 HOH HOH . H 4 HOH B 101 214 214 HOH HOH . H 4 HOH B 102 219 219 HOH HOH . H 4 HOH B 103 223 223 HOH HOH . H 4 HOH B 104 227 227 HOH HOH . H 4 HOH B 105 232 232 HOH HOH . H 4 HOH B 106 233 233 HOH HOH . H 4 HOH B 107 239 239 HOH HOH . H 4 HOH B 108 243 243 HOH HOH . H 4 HOH B 109 244 244 HOH HOH . H 4 HOH B 110 245 245 HOH HOH . H 4 HOH B 111 247 247 HOH HOH . H 4 HOH B 112 248 248 HOH HOH . H 4 HOH B 113 249 249 HOH HOH . H 4 HOH B 114 256 256 HOH HOH . H 4 HOH B 115 257 257 HOH HOH . H 4 HOH B 116 258 258 HOH HOH . H 4 HOH B 117 259 259 HOH HOH . H 4 HOH B 118 260 260 HOH HOH . H 4 HOH B 119 261 261 HOH HOH . H 4 HOH B 120 262 262 HOH HOH . H 4 HOH B 121 263 263 HOH HOH . H 4 HOH B 122 264 264 HOH HOH . H 4 HOH B 123 265 265 HOH HOH . H 4 HOH B 124 266 266 HOH HOH . H 4 HOH B 125 267 267 HOH HOH . H 4 HOH B 126 268 268 HOH HOH . H 4 HOH B 127 275 275 HOH HOH . H 4 HOH B 128 276 276 HOH HOH . H 4 HOH B 129 285 285 HOH HOH . H 4 HOH B 130 286 286 HOH HOH . H 4 HOH B 131 287 287 HOH HOH . H 4 HOH B 132 288 288 HOH HOH . H 4 HOH B 133 289 289 HOH HOH . H 4 HOH B 134 290 290 HOH HOH . H 4 HOH B 135 291 291 HOH HOH . H 4 HOH B 136 292 292 HOH HOH . H 4 HOH B 137 293 293 HOH HOH . H 4 HOH B 138 304 304 HOH HOH . H 4 HOH B 139 305 305 HOH HOH . H 4 HOH B 140 306 306 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 0.463 -9.018 10.638 0.6 15.55 ? C1 EDO 112 A 1 HETATM 2 O O1 EDO . . . D 3 -0.033 -8.317 9.506 0.6 14.68 ? O1 EDO 112 A 1 HETATM 3 C C2 EDO . . . D 3 -0.349 -10.239 10.849 0.6 16.44 ? C2 EDO 112 A 1 HETATM 4 O O2 EDO . . . D 3 -1.338 -9.803 11.788 0.6 17.49 ? O2 EDO 112 A 1 HETATM 5 H H11 EDO . . . D 3 0.318 -8.359 11.486 0.6 15.56 ? H11 EDO 112 A 1 HETATM 6 H H12 EDO . . . D 3 1.522 -9.242 10.571 0.6 15.35 ? H12 EDO 112 A 1 HETATM 7 H HO1 EDO . . . D 3 0.689 -7.828 9.087 0.6 15.25 ? HO1 EDO 112 A 1 HETATM 8 H H21 EDO . . . D 3 -0.81 -10.555 9.916 0.6 16.18 ? H21 EDO 112 A 1 HETATM 9 H H22 EDO . . . D 3 0.245 -11.064 11.243 0.6 16.21 ? H22 EDO 112 A 1 HETATM 10 H HO2 EDO . . . D 3 -2.218 -10.034 11.46 0.6 17.49 ? HO2 EDO 112 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 10 #