data_3AJL
#
_model_server_result.job_id            hm3nzzaV_e0nnkFIMCGCSw 
_model_server_result.datetime_utc      '2024-11-01 06:19:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ajl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":25}' 
#
_entry.id    3AJL 
#
_exptl.entry_id    3AJL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              277.324 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3AJL 
_cell.length_a            25.003 
_cell.length_b            40.501 
_cell.length_c            66.773 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3AJL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A O3' DT 7 A DT 7 1_555 A P UFR 8 A UFR 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? 
covale ? covale2 B O3' DT 7 B DT 19 1_555 B P UFR 8 B UFR 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? 
metalc ? metalc1 D MG MG . A MG 26 1_555 E O HOH . A HOH 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? 
metalc ? metalc2 D MG MG . A MG 26 1_555 E O HOH . A HOH 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N3 DC 3 A DC 3 1_555 B N1 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N4 DC 3 A DC 3 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A O2 DC 3 A DC 3 1_555 B N2 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N1 DG 4 A DG 4 1_555 B N3 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N2 DG 4 A DG 4 1_555 B O2 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A O6 DG 4 A DG 4 1_555 B N4 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DG-UFR MISPAIR' hydrog13 A N1 DG 5 A DG 5 1_555 B O4 UFR 8 B UFR 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N1 DA 6 A DA 6 1_555 B N3 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A N6 DA 6 A DA 6 1_555 B O4 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N3 DT 7 A DT 7 1_555 B N1 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A O4 DT 7 A DT 7 1_555 B N6 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'UFR-DG MISPAIR' hydrog18 A O4 UFR 8 A UFR 8 1_555 B N1 DG 5 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 A N3 DC 9 A DC 9 1_555 B N1 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 A N4 DC 9 A DC 9 1_555 B O6 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 A O2 DC 9 A DC 9 1_555 B N2 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 A N1 DG 10 A DG 10 1_555 B N3 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 A N2 DG 10 A DG 10 1_555 B O2 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 A O6 DG 10 A DG 10 1_555 B N4 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 A N3 DC 11 A DC 11 1_555 B N1 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 A N4 DC 11 A DC 11 1_555 B O6 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog27 A O2 DC 11 A DC 11 1_555 B N2 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog28 A N1 DG 12 A DG 12 1_555 B N3 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog29 A N2 DG 12 A DG 12 1_555 B O2 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog30 A O6 DG 12 A DG 12 1_555 B N4 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C16 H15 N5' 
_chem_comp.formula_weight    277.324 
_chem_comp.id                DAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 DAP sing 39 n y 
N1 C8 DAP sing 40 n y 
N1 HN1 DAP sing 41 n n 
C2 C3 DAP doub 42 n y 
C2 C1' DAP sing 43 n y 
C3 C9 DAP sing 44 n y 
C3 H3 DAP sing 45 n n 
C4 C5 DAP doub 46 n y 
C4 C9 DAP sing 47 n y 
C4 H4 DAP sing 48 n n 
C5 C6 DAP sing 49 n y 
C5 H5 DAP sing 50 n n 
C6 C7 DAP doub 51 n y 
C6 C10 DAP sing 52 n n 
C7 C8 DAP sing 53 n y 
C7 H7 DAP sing 54 n n 
C8 C9 DAP doub 55 n y 
C10 N2 DAP doub 56 n n 
C10 N3 DAP sing 57 n n 
N2 HN2 DAP sing 58 n n 
N3 HN31 DAP sing 59 n n 
N3 HN32 DAP sing 60 n n 
C1' C2' DAP doub 61 n y 
C1' C6' DAP sing 62 n y 
C2' C3' DAP sing 63 n y 
C2' H2' DAP sing 64 n n 
C3' C4' DAP doub 65 n y 
C3' H3' DAP sing 66 n n 
C4' C5' DAP sing 67 n y 
C4' C11 DAP sing 68 n n 
C5' C6' DAP doub 69 n y 
C5' H5' DAP sing 70 n n 
C6' H6' DAP sing 71 n n 
C11 N4 DAP doub 72 n n 
C11 N5 DAP sing 73 n n 
N4 HN4 DAP sing 74 n n 
N5 HN51 DAP sing 75 n n 
N5 HN52 DAP sing 76 n n 
#
_atom_sites.entry_id                     3AJL 
_atom_sites.fract_transf_matrix[1][1]    0.039995 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024691 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014976 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DAP A 1 25 25 DAP DAP . 
D 3 MG A 1 26 26 MG MG2 . 
E 4 HOH A 1 102 102 HOH HOH . 
E 4 HOH A 2 103 103 HOH HOH . 
E 4 HOH A 3 104 104 HOH HOH . 
E 4 HOH A 4 121 121 HOH HOH . 
E 4 HOH A 5 128 128 HOH HOH . 
E 4 HOH A 6 129 129 HOH HOH . 
E 4 HOH A 7 135 135 HOH HOH . 
E 4 HOH A 8 137 137 HOH HOH . 
E 4 HOH A 9 140 140 HOH HOH . 
E 4 HOH A 10 141 141 HOH HOH . 
E 4 HOH A 11 142 142 HOH HOH . 
E 4 HOH A 12 143 143 HOH HOH . 
E 4 HOH A 13 144 144 HOH HOH . 
E 4 HOH A 14 149 149 HOH HOH . 
E 4 HOH A 15 157 157 HOH HOH . 
E 4 HOH A 16 158 158 HOH HOH . 
E 4 HOH A 17 159 159 HOH HOH . 
E 4 HOH A 18 160 160 HOH HOH . 
E 4 HOH A 19 162 162 HOH HOH . 
E 4 HOH A 20 163 163 HOH HOH . 
E 4 HOH A 21 167 167 HOH HOH . 
E 4 HOH A 22 168 168 HOH HOH . 
F 4 HOH B 1 101 101 HOH HOH . 
F 4 HOH B 2 105 105 HOH HOH . 
F 4 HOH B 3 107 107 HOH HOH . 
F 4 HOH B 4 109 109 HOH HOH . 
F 4 HOH B 5 111 111 HOH HOH . 
F 4 HOH B 6 112 112 HOH HOH . 
F 4 HOH B 7 114 114 HOH HOH . 
F 4 HOH B 8 120 120 HOH HOH . 
F 4 HOH B 9 125 125 HOH HOH . 
F 4 HOH B 10 126 126 HOH HOH . 
F 4 HOH B 11 130 130 HOH HOH . 
F 4 HOH B 12 131 131 HOH HOH . 
F 4 HOH B 13 132 132 HOH HOH . 
F 4 HOH B 14 138 138 HOH HOH . 
F 4 HOH B 15 145 145 HOH HOH . 
F 4 HOH B 16 150 150 HOH HOH . 
F 4 HOH B 17 154 154 HOH HOH . 
F 4 HOH B 18 155 155 HOH HOH . 
F 4 HOH B 19 156 156 HOH HOH . 
F 4 HOH B 20 161 161 HOH HOH . 
F 4 HOH B 21 164 164 HOH HOH . 
F 4 HOH B 22 166 166 HOH HOH . 
F 4 HOH B 23 170 170 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 DAP . . . C 2 15.098 3.002 25.193 1 70.67 ? N1 DAP 25 A 1 
HETATM 2 C C2 DAP . . . C 2 15.769 4.029 25.907 1 71.68 ? C2 DAP 25 A 1 
HETATM 3 C C3 DAP . . . C 2 16.953 4.272 25.383 1 70.9 ? C3 DAP 25 A 1 
HETATM 4 C C4 DAP . . . C 2 18.181 3.188 23.342 1 72.16 ? C4 DAP 25 A 1 
HETATM 5 C C5 DAP . . . C 2 18.068 2.215 22.311 1 72.85 ? C5 DAP 25 A 1 
HETATM 6 C C6 DAP . . . C 2 16.842 1.423 22.221 1 72.87 ? C6 DAP 25 A 1 
HETATM 7 C C7 DAP . . . C 2 15.789 1.628 23.158 1 71.25 ? C7 DAP 25 A 1 
HETATM 8 C C8 DAP . . . C 2 15.949 2.627 24.191 1 70.83 ? C8 DAP 25 A 1 
HETATM 9 C C9 DAP . . . C 2 17.097 3.385 24.287 1 71.29 ? C9 DAP 25 A 1 
HETATM 10 C C10 DAP . . . C 2 16.699 0.475 21.227 1 73.15 ? C10 DAP 25 A 1 
HETATM 11 N N2 DAP . . . C 2 17.651 0.233 20.323 1 73.01 ? N2 DAP 25 A 1 
HETATM 12 N N3 DAP . . . C 2 15.578 -0.261 21.119 1 72.45 ? N3 DAP 25 A 1 
HETATM 13 C C1' DAP . . . C 2 15.074 4.656 27.084 1 73.02 ? C1' DAP 25 A 1 
HETATM 14 C C2' DAP . . . C 2 15.635 5.711 27.878 1 74.74 ? C2' DAP 25 A 1 
HETATM 15 C C3' DAP . . . C 2 14.886 6.227 28.969 1 75.97 ? C3' DAP 25 A 1 
HETATM 16 C C4' DAP . . . C 2 13.563 5.706 29.308 1 75.68 ? C4' DAP 25 A 1 
HETATM 17 C C5' DAP . . . C 2 13.032 4.648 28.494 1 74.86 ? C5' DAP 25 A 1 
HETATM 18 C C6' DAP . . . C 2 13.756 4.124 27.401 1 73.73 ? C6' DAP 25 A 1 
HETATM 19 C C11 DAP . . . C 2 12.872 6.225 30.372 1 76.06 ? C11 DAP 25 A 1 
HETATM 20 N N4 DAP . . . C 2 11.651 5.862 30.825 1 75.96 ? N4 DAP 25 A 1 
HETATM 21 N N5 DAP . . . C 2 13.417 7.234 31.117 1 75.29 ? N5 DAP 25 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#