data_3AJR # _model_server_result.job_id 2tC0TCaRIRBKrDdMMy7Y0A _model_server_result.datetime_utc '2024-10-11 09:23:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ajr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":5277}' # _entry.id 3AJR # _exptl.entry_id 3AJR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.24 _cell.angle_gamma 90 _cell.entry_id 3AJR _cell.length_a 150.567 _cell.length_b 46.588 _cell.length_c 89.929 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AJR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 3AJR _atom_sites.fract_transf_matrix[1][1] 0.006642 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002852 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021465 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VAH A 1 318 318 VAH VAH . D 3 NAD A 1 3001 3001 NAD NAD . E 4 MPD A 1 5276 5276 MPD MPD . F 2 VAH B 1 318 318 VAH VAH . G 3 NAD B 1 3002 3002 NAD NAD . H 4 MPD B 1 5277 5277 MPD MPD . I 5 HOH A 1 319 2 HOH TIP . I 5 HOH A 2 320 3 HOH TIP . I 5 HOH A 3 321 6 HOH TIP . I 5 HOH A 4 322 7 HOH TIP . I 5 HOH A 5 323 8 HOH TIP . I 5 HOH A 6 324 11 HOH TIP . I 5 HOH A 7 325 13 HOH TIP . I 5 HOH A 8 326 14 HOH TIP . I 5 HOH A 9 327 16 HOH TIP . I 5 HOH A 10 328 18 HOH TIP . I 5 HOH A 11 329 19 HOH TIP . I 5 HOH A 12 330 21 HOH TIP . I 5 HOH A 13 331 22 HOH TIP . I 5 HOH A 14 332 24 HOH TIP . I 5 HOH A 15 333 26 HOH TIP . I 5 HOH A 16 334 27 HOH TIP . I 5 HOH A 17 335 28 HOH TIP . I 5 HOH A 18 336 29 HOH TIP . I 5 HOH A 19 337 30 HOH TIP . I 5 HOH A 20 338 33 HOH TIP . I 5 HOH A 21 339 34 HOH TIP . I 5 HOH A 22 340 36 HOH TIP . I 5 HOH A 23 341 38 HOH TIP . I 5 HOH A 24 342 39 HOH TIP . I 5 HOH A 25 343 40 HOH TIP . I 5 HOH A 26 344 42 HOH TIP . I 5 HOH A 27 345 44 HOH TIP . I 5 HOH A 28 346 46 HOH TIP . I 5 HOH A 29 347 47 HOH TIP . I 5 HOH A 30 348 50 HOH TIP . I 5 HOH A 31 349 51 HOH TIP . I 5 HOH A 32 350 52 HOH TIP . I 5 HOH A 33 351 53 HOH TIP . I 5 HOH A 34 352 55 HOH TIP . I 5 HOH A 35 353 57 HOH TIP . I 5 HOH A 36 354 58 HOH TIP . I 5 HOH A 37 355 59 HOH TIP . I 5 HOH A 38 356 61 HOH TIP . I 5 HOH A 39 357 62 HOH TIP . I 5 HOH A 40 358 66 HOH TIP . I 5 HOH A 41 359 68 HOH TIP . I 5 HOH A 42 360 74 HOH TIP . I 5 HOH A 43 361 81 HOH TIP . I 5 HOH A 44 362 90 HOH TIP . I 5 HOH A 45 363 91 HOH TIP . I 5 HOH A 46 364 96 HOH TIP . I 5 HOH A 47 365 97 HOH TIP . I 5 HOH A 48 366 99 HOH TIP . I 5 HOH A 49 367 101 HOH TIP . I 5 HOH A 50 368 103 HOH TIP . I 5 HOH A 51 369 104 HOH TIP . I 5 HOH A 52 370 111 HOH TIP . I 5 HOH A 53 371 113 HOH TIP . I 5 HOH A 54 372 115 HOH TIP . I 5 HOH A 55 373 117 HOH TIP . I 5 HOH A 56 374 119 HOH TIP . I 5 HOH A 57 375 120 HOH TIP . I 5 HOH A 58 376 122 HOH TIP . I 5 HOH A 59 377 124 HOH TIP . I 5 HOH A 60 378 126 HOH TIP . I 5 HOH A 61 379 127 HOH TIP . I 5 HOH A 62 380 128 HOH TIP . I 5 HOH A 63 381 129 HOH TIP . I 5 HOH A 64 382 130 HOH TIP . I 5 HOH A 65 383 131 HOH TIP . I 5 HOH A 66 384 132 HOH TIP . I 5 HOH A 67 385 134 HOH TIP . I 5 HOH A 68 386 136 HOH TIP . I 5 HOH A 69 387 137 HOH TIP . I 5 HOH A 70 388 138 HOH TIP . I 5 HOH A 71 389 140 HOH TIP . I 5 HOH A 72 390 141 HOH TIP . I 5 HOH A 73 391 142 HOH TIP . I 5 HOH A 74 392 143 HOH TIP . I 5 HOH A 75 393 145 HOH TIP . I 5 HOH A 76 394 146 HOH TIP . I 5 HOH A 77 395 147 HOH TIP . I 5 HOH A 78 396 149 HOH TIP . I 5 HOH A 79 397 151 HOH TIP . I 5 HOH A 80 398 152 HOH TIP . I 5 HOH A 81 399 154 HOH TIP . I 5 HOH A 82 400 155 HOH TIP . I 5 HOH A 83 401 160 HOH TIP . I 5 HOH A 84 402 162 HOH TIP . I 5 HOH A 85 403 164 HOH TIP . I 5 HOH A 86 404 165 HOH TIP . I 5 HOH A 87 405 166 HOH TIP . I 5 HOH A 88 406 168 HOH TIP . I 5 HOH A 89 407 169 HOH TIP . I 5 HOH A 90 408 170 HOH TIP . I 5 HOH A 91 409 172 HOH TIP . I 5 HOH A 92 410 173 HOH TIP . I 5 HOH A 93 411 174 HOH TIP . I 5 HOH A 94 412 175 HOH TIP . I 5 HOH A 95 413 177 HOH TIP . I 5 HOH A 96 414 179 HOH TIP . I 5 HOH A 97 415 180 HOH TIP . I 5 HOH A 98 416 181 HOH TIP . I 5 HOH A 99 417 182 HOH TIP . I 5 HOH A 100 418 184 HOH TIP . I 5 HOH A 101 419 185 HOH TIP . I 5 HOH A 102 420 186 HOH TIP . I 5 HOH A 103 421 189 HOH TIP . I 5 HOH A 104 422 84 HOH TIP . I 5 HOH A 105 423 192 HOH TIP . I 5 HOH A 106 424 193 HOH TIP . I 5 HOH A 107 425 196 HOH TIP . I 5 HOH A 108 426 197 HOH TIP . I 5 HOH A 109 427 198 HOH TIP . I 5 HOH A 110 428 200 HOH TIP . I 5 HOH A 111 429 201 HOH TIP . I 5 HOH A 112 430 202 HOH TIP . I 5 HOH A 113 431 203 HOH TIP . I 5 HOH A 114 432 205 HOH TIP . I 5 HOH A 115 433 208 HOH TIP . I 5 HOH A 116 434 212 HOH TIP . I 5 HOH A 117 435 213 HOH TIP . I 5 HOH A 118 436 214 HOH TIP . I 5 HOH A 119 437 216 HOH TIP . I 5 HOH A 120 438 218 HOH TIP . I 5 HOH A 121 439 220 HOH TIP . I 5 HOH A 122 440 222 HOH TIP . I 5 HOH A 123 441 225 HOH TIP . I 5 HOH A 124 442 226 HOH TIP . I 5 HOH A 125 443 227 HOH TIP . I 5 HOH A 126 444 229 HOH TIP . I 5 HOH A 127 445 232 HOH TIP . I 5 HOH A 128 446 234 HOH TIP . I 5 HOH A 129 447 235 HOH TIP . I 5 HOH A 130 448 237 HOH TIP . I 5 HOH A 131 449 239 HOH TIP . I 5 HOH A 132 450 240 HOH TIP . J 5 HOH B 1 319 1 HOH TIP . J 5 HOH B 2 320 4 HOH TIP . J 5 HOH B 3 321 5 HOH TIP . J 5 HOH B 4 322 9 HOH TIP . J 5 HOH B 5 323 10 HOH TIP . J 5 HOH B 6 324 12 HOH TIP . J 5 HOH B 7 325 15 HOH TIP . J 5 HOH B 8 326 17 HOH TIP . J 5 HOH B 9 327 20 HOH TIP . J 5 HOH B 10 328 23 HOH TIP . J 5 HOH B 11 329 25 HOH TIP . J 5 HOH B 12 330 31 HOH TIP . J 5 HOH B 13 331 32 HOH TIP . J 5 HOH B 14 332 35 HOH TIP . J 5 HOH B 15 333 37 HOH TIP . J 5 HOH B 16 334 41 HOH TIP . J 5 HOH B 17 335 43 HOH TIP . J 5 HOH B 18 336 45 HOH TIP . J 5 HOH B 19 337 48 HOH TIP . J 5 HOH B 20 338 49 HOH TIP . J 5 HOH B 21 339 54 HOH TIP . J 5 HOH B 22 340 56 HOH TIP . J 5 HOH B 23 341 60 HOH TIP . J 5 HOH B 24 342 63 HOH TIP . J 5 HOH B 25 343 64 HOH TIP . J 5 HOH B 26 344 65 HOH TIP . J 5 HOH B 27 345 67 HOH TIP . J 5 HOH B 28 346 69 HOH TIP . J 5 HOH B 29 347 70 HOH TIP . J 5 HOH B 30 348 71 HOH TIP . J 5 HOH B 31 349 72 HOH TIP . J 5 HOH B 32 350 73 HOH TIP . J 5 HOH B 33 351 75 HOH TIP . J 5 HOH B 34 352 76 HOH TIP . J 5 HOH B 35 353 77 HOH TIP . J 5 HOH B 36 354 78 HOH TIP . J 5 HOH B 37 355 79 HOH TIP . J 5 HOH B 38 356 80 HOH TIP . J 5 HOH B 39 357 82 HOH TIP . J 5 HOH B 40 358 83 HOH TIP . J 5 HOH B 41 360 85 HOH TIP . J 5 HOH B 42 361 86 HOH TIP . J 5 HOH B 43 362 87 HOH TIP . J 5 HOH B 44 363 88 HOH TIP . J 5 HOH B 45 364 89 HOH TIP . J 5 HOH B 46 365 92 HOH TIP . J 5 HOH B 47 366 93 HOH TIP . J 5 HOH B 48 367 94 HOH TIP . J 5 HOH B 49 368 95 HOH TIP . J 5 HOH B 50 369 98 HOH TIP . J 5 HOH B 51 370 100 HOH TIP . J 5 HOH B 52 371 102 HOH TIP . J 5 HOH B 53 372 105 HOH TIP . J 5 HOH B 54 373 106 HOH TIP . J 5 HOH B 55 374 107 HOH TIP . J 5 HOH B 56 375 108 HOH TIP . J 5 HOH B 57 376 109 HOH TIP . J 5 HOH B 58 377 110 HOH TIP . J 5 HOH B 59 378 112 HOH TIP . J 5 HOH B 60 379 114 HOH TIP . J 5 HOH B 61 380 116 HOH TIP . J 5 HOH B 62 381 118 HOH TIP . J 5 HOH B 63 382 121 HOH TIP . J 5 HOH B 64 383 123 HOH TIP . J 5 HOH B 65 384 125 HOH TIP . J 5 HOH B 66 385 133 HOH TIP . J 5 HOH B 67 386 135 HOH TIP . J 5 HOH B 68 387 139 HOH TIP . J 5 HOH B 69 388 144 HOH TIP . J 5 HOH B 70 389 148 HOH TIP . J 5 HOH B 71 390 150 HOH TIP . J 5 HOH B 72 391 153 HOH TIP . J 5 HOH B 73 392 156 HOH TIP . J 5 HOH B 74 393 157 HOH TIP . J 5 HOH B 75 394 158 HOH TIP . J 5 HOH B 76 395 159 HOH TIP . J 5 HOH B 77 396 161 HOH TIP . J 5 HOH B 78 397 163 HOH TIP . J 5 HOH B 79 398 167 HOH TIP . J 5 HOH B 80 399 171 HOH TIP . J 5 HOH B 81 400 176 HOH TIP . J 5 HOH B 82 401 178 HOH TIP . J 5 HOH B 83 402 183 HOH TIP . J 5 HOH B 84 403 187 HOH TIP . J 5 HOH B 85 404 188 HOH TIP . J 5 HOH B 86 405 190 HOH TIP . J 5 HOH B 87 406 194 HOH TIP . J 5 HOH B 88 407 195 HOH TIP . J 5 HOH B 89 408 199 HOH TIP . J 5 HOH B 90 409 204 HOH TIP . J 5 HOH B 91 410 206 HOH TIP . J 5 HOH B 92 411 207 HOH TIP . J 5 HOH B 93 412 209 HOH TIP . J 5 HOH B 94 413 210 HOH TIP . J 5 HOH B 95 414 211 HOH TIP . J 5 HOH B 96 415 215 HOH TIP . J 5 HOH B 97 416 217 HOH TIP . J 5 HOH B 98 417 219 HOH TIP . J 5 HOH B 99 418 221 HOH TIP . J 5 HOH B 100 419 223 HOH TIP . J 5 HOH B 101 420 224 HOH TIP . J 5 HOH B 102 421 228 HOH TIP . J 5 HOH B 103 422 191 HOH TIP . J 5 HOH B 104 423 231 HOH TIP . J 5 HOH B 105 424 233 HOH TIP . J 5 HOH B 106 425 236 HOH TIP . J 5 HOH B 107 426 238 HOH TIP . J 5 HOH B 108 427 241 HOH TIP . J 5 HOH B 109 428 242 HOH TIP . J 5 HOH B 110 429 243 HOH TIP . J 5 HOH B 111 430 230 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . H 4 13.069 -2.837 -5.198 1 30.07 ? C1 MPD 5277 B 1 HETATM 2 C C2 MPD . . . H 4 13.438 -1.979 -4.021 1 31.54 ? C2 MPD 5277 B 1 HETATM 3 O O2 MPD . . . H 4 12.86 -2.511 -2.831 1 30.29 ? O2 MPD 5277 B 1 HETATM 4 C CM MPD . . . H 4 14.922 -1.982 -3.879 1 31.6 ? CM MPD 5277 B 1 HETATM 5 C C3 MPD . . . H 4 12.966 -0.519 -4.222 1 32.62 ? C3 MPD 5277 B 1 HETATM 6 C C4 MPD . . . H 4 11.439 -0.391 -4.427 1 31.84 ? C4 MPD 5277 B 1 HETATM 7 O O4 MPD . . . H 4 10.683 -1.035 -3.398 1 34.41 ? O4 MPD 5277 B 1 HETATM 8 C C5 MPD . . . H 4 11.109 1.103 -4.529 1 30.54 ? C5 MPD 5277 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #