data_3AKC # _model_server_result.job_id O3p-j4EQ1Fy-2LfRoDKrhw _model_server_result.datetime_utc '2024-10-19 08:26:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3akc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":211}' # _entry.id 3AKC # _exptl.entry_id 3AKC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 157.25 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GADOLINIUM ATOM' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3AKC _cell.length_a 62.206 _cell.length_b 62.206 _cell.length_c 110.951 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AKC _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 16 A SER 16 1_555 D GD GD . A GD 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc2 B O2B CDP . A CDP 209 1_555 D GD GD . A GD 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc3 C O3B ADP . A ADP 210 1_555 D GD GD . A GD 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc4 C O2A ADP . A ADP 210 1_555 D GD GD . A GD 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc5 C O2B ADP . A ADP 210 1_555 D GD GD . A GD 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? metalc ? metalc6 D GD GD . A GD 211 1_555 E O HOH . A HOH 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc7 D GD GD . A GD 211 1_555 E O HOH . A HOH 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc8 D GD GD . A GD 211 1_555 E O HOH . A HOH 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc9 D GD GD . A GD 211 1_555 E O HOH . A HOH 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? # _chem_comp.formula Gd _chem_comp.formula_weight 157.25 _chem_comp.id GD _chem_comp.mon_nstd_flag . _chem_comp.name 'GADOLINIUM ATOM' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3AKC _atom_sites.fract_transf_matrix[1][1] 0.016076 _atom_sites.fract_transf_matrix[1][2] 0.009281 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018563 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009013 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CDP A 1 209 209 CDP CDP . C 3 ADP A 1 210 210 ADP ADP . D 4 GD A 1 211 211 GD GD . E 5 HOH A 1 212 1 HOH TIP . E 5 HOH A 2 213 2 HOH TIP . E 5 HOH A 3 214 3 HOH TIP . E 5 HOH A 4 215 4 HOH TIP . E 5 HOH A 5 216 5 HOH TIP . E 5 HOH A 6 217 6 HOH TIP . E 5 HOH A 7 218 7 HOH TIP . E 5 HOH A 8 219 8 HOH TIP . E 5 HOH A 9 220 10 HOH TIP . E 5 HOH A 10 221 11 HOH TIP . E 5 HOH A 11 222 12 HOH TIP . E 5 HOH A 12 223 13 HOH TIP . E 5 HOH A 13 224 14 HOH TIP . E 5 HOH A 14 225 15 HOH TIP . E 5 HOH A 15 226 16 HOH TIP . E 5 HOH A 16 227 17 HOH TIP . E 5 HOH A 17 228 18 HOH TIP . E 5 HOH A 18 229 19 HOH TIP . E 5 HOH A 19 230 20 HOH TIP . E 5 HOH A 20 231 21 HOH TIP . E 5 HOH A 21 232 22 HOH TIP . E 5 HOH A 22 233 23 HOH TIP . E 5 HOH A 23 234 24 HOH TIP . E 5 HOH A 24 235 25 HOH TIP . E 5 HOH A 25 236 26 HOH TIP . E 5 HOH A 26 237 27 HOH TIP . E 5 HOH A 27 238 28 HOH TIP . E 5 HOH A 28 239 29 HOH TIP . E 5 HOH A 29 240 30 HOH TIP . E 5 HOH A 30 241 31 HOH TIP . E 5 HOH A 31 242 32 HOH TIP . E 5 HOH A 32 243 33 HOH TIP . E 5 HOH A 33 244 34 HOH TIP . E 5 HOH A 34 245 35 HOH TIP . E 5 HOH A 35 246 36 HOH TIP . E 5 HOH A 36 247 37 HOH TIP . E 5 HOH A 37 248 38 HOH TIP . E 5 HOH A 38 249 39 HOH TIP . E 5 HOH A 39 250 40 HOH TIP . E 5 HOH A 40 251 41 HOH TIP . E 5 HOH A 41 252 42 HOH TIP . E 5 HOH A 42 253 43 HOH TIP . E 5 HOH A 43 254 44 HOH TIP . E 5 HOH A 44 255 45 HOH TIP . E 5 HOH A 45 256 46 HOH TIP . E 5 HOH A 46 257 47 HOH TIP . E 5 HOH A 47 258 48 HOH TIP . E 5 HOH A 48 259 49 HOH TIP . E 5 HOH A 49 260 50 HOH TIP . E 5 HOH A 50 261 51 HOH TIP . E 5 HOH A 51 262 52 HOH TIP . E 5 HOH A 52 263 53 HOH TIP . E 5 HOH A 53 264 54 HOH TIP . E 5 HOH A 54 265 55 HOH TIP . E 5 HOH A 55 266 56 HOH TIP . E 5 HOH A 56 267 57 HOH TIP . E 5 HOH A 57 268 58 HOH TIP . E 5 HOH A 58 269 59 HOH TIP . E 5 HOH A 59 270 60 HOH TIP . E 5 HOH A 60 271 61 HOH TIP . E 5 HOH A 61 272 62 HOH TIP . E 5 HOH A 62 273 63 HOH TIP . E 5 HOH A 63 274 64 HOH TIP . E 5 HOH A 64 275 65 HOH TIP . E 5 HOH A 65 276 66 HOH TIP . E 5 HOH A 66 277 67 HOH TIP . E 5 HOH A 67 278 68 HOH TIP . E 5 HOH A 68 279 69 HOH TIP . E 5 HOH A 69 280 70 HOH TIP . E 5 HOH A 70 281 71 HOH TIP . E 5 HOH A 71 282 72 HOH TIP . E 5 HOH A 72 283 73 HOH TIP . E 5 HOH A 73 284 74 HOH TIP . E 5 HOH A 74 285 75 HOH TIP . E 5 HOH A 75 286 76 HOH TIP . E 5 HOH A 76 287 77 HOH TIP . E 5 HOH A 77 288 78 HOH TIP . E 5 HOH A 78 289 79 HOH TIP . E 5 HOH A 79 290 80 HOH TIP . E 5 HOH A 80 291 81 HOH TIP . E 5 HOH A 81 292 82 HOH TIP . E 5 HOH A 82 293 83 HOH TIP . E 5 HOH A 83 294 84 HOH TIP . E 5 HOH A 84 295 85 HOH TIP . E 5 HOH A 85 296 86 HOH TIP . E 5 HOH A 86 297 87 HOH TIP . E 5 HOH A 87 298 88 HOH TIP . E 5 HOH A 88 299 89 HOH TIP . E 5 HOH A 89 300 90 HOH TIP . E 5 HOH A 90 301 91 HOH TIP . E 5 HOH A 91 302 92 HOH TIP . E 5 HOH A 92 303 93 HOH TIP . E 5 HOH A 93 304 94 HOH TIP . E 5 HOH A 94 305 95 HOH TIP . E 5 HOH A 95 306 96 HOH TIP . E 5 HOH A 96 307 97 HOH TIP . E 5 HOH A 97 308 98 HOH TIP . E 5 HOH A 98 309 99 HOH TIP . E 5 HOH A 99 310 100 HOH TIP . E 5 HOH A 100 311 101 HOH TIP . E 5 HOH A 101 312 102 HOH TIP . E 5 HOH A 102 313 103 HOH TIP . E 5 HOH A 103 314 104 HOH TIP . E 5 HOH A 104 315 105 HOH TIP . E 5 HOH A 105 316 106 HOH TIP . E 5 HOH A 106 317 107 HOH TIP . E 5 HOH A 107 318 108 HOH TIP . E 5 HOH A 108 319 109 HOH TIP . E 5 HOH A 109 320 110 HOH TIP . E 5 HOH A 110 321 111 HOH TIP . E 5 HOH A 111 322 112 HOH TIP . E 5 HOH A 112 323 113 HOH TIP . E 5 HOH A 113 324 114 HOH TIP . E 5 HOH A 114 325 115 HOH TIP . E 5 HOH A 115 326 116 HOH TIP . E 5 HOH A 116 327 117 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol GD _atom_site.label_atom_id GD _atom_site.label_comp_id GD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -6.139 _atom_site.Cartn_y 33.667 _atom_site.Cartn_z 20.142 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.59 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id GD _atom_site.auth_comp_id GD _atom_site.auth_seq_id 211 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #