data_3AKL
#
_model_server_result.job_id            zsH9KNhtNkXKyHG9fqxw9w 
_model_server_result.datetime_utc      '2025-08-31 09:18:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3akl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":404}' 
#
_entry.id    3AKL 
#
_exptl.entry_id    3AKL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         78.84 
_cell.angle_beta          71.36 
_cell.angle_gamma         85.44 
_cell.entry_id            3AKL 
_cell.length_a            60.133 
_cell.length_b            74.835 
_cell.length_c            75.815 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3AKL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,P,Q 1 1 
C,D,K,L,M,N,O,R,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 I N N 
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 61 A CYS 61 1_555 A SG CYS 180 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc1 A OD1 ASN 160 A ASN 160 1_555 G MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? 
metalc ? metalc2 A OD2 ASP 179 A ASP 179 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? 
metalc ? metalc3 A OD1 ASP 179 A ASP 179 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? 
metalc ? metalc4 G MG MG . A MG 405 1_555 E O1G ANP . A ANP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc5 G MG MG . A MG 405 1_555 E O3A ANP . A ANP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc6 G MG MG . A MG 405 1_555 E O2A ANP . A ANP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? 
metalc ? metalc7 B OD1 ASN 160 B ASN 160 1_555 J MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? 
metalc ? metalc8 B OD1 ASP 179 B ASP 179 1_555 I MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? 
metalc ? metalc9 B OD2 ASP 179 B ASP 179 1_555 J MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? 
metalc ? metalc10 B OG SER 182 B SER 182 1_555 I MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? 
metalc ? metalc11 I MG MG . B MG 401 1_555 H O1G ANP . B ANP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? 
metalc ? metalc12 I MG MG . B MG 401 1_555 H O2B ANP . B ANP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? 
metalc ? metalc13 J MG MG . B MG 404 1_555 H O2A ANP . B ANP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc14 J MG MG . B MG 404 1_555 H O3G ANP . B ANP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? 
metalc ? metalc15 J MG MG . B MG 404 1_555 H O3' ANP . B ANP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? 
metalc ? metalc16 C OD1 ASN 160 C ASN 160 1_555 L MG MG . C MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? 
metalc ? metalc17 C OD2 ASP 179 C ASP 179 1_555 L MG MG . C MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc18 L MG MG . C MG 400 1_555 K O3B ADP . C ADP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc19 L MG MG . C MG 400 1_555 K O2A ADP . C ADP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc20 D OD2 ASP 179 D ASP 179 1_555 O MG MG . D MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? 
metalc ? metalc21 O MG MG . D MG 406 1_555 M O2G ANP . D ANP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3AKL 
_atom_sites.fract_transf_matrix[1][1]    0.01663 
_atom_sites.fract_transf_matrix[1][2]    -0.001327 
_atom_sites.fract_transf_matrix[1][3]    -0.005462 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013405 
_atom_sites.fract_transf_matrix[2][3]    -0.002425 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014147 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ANP A 1 601 601 ANP ANP . 
F 3 MG A 1 402 402 MG MG . 
G 3 MG A 1 405 405 MG MG . 
H 2 ANP B 1 600 600 ANP ANP . 
I 3 MG B 1 401 401 MG MG . 
J 3 MG B 1 404 404 MG MG . 
K 4 ADP C 1 500 500 ADP ADP . 
L 3 MG C 1 400 400 MG MG . 
M 2 ANP D 1 602 602 ANP ANP . 
N 3 MG D 1 403 403 MG MG . 
O 3 MG D 1 406 406 MG MG . 
P 5 HOH A 1 326 6 HOH HOH . 
P 5 HOH A 2 327 9 HOH HOH . 
P 5 HOH A 3 328 13 HOH HOH . 
P 5 HOH A 4 329 15 HOH HOH . 
P 5 HOH A 5 330 16 HOH HOH . 
P 5 HOH A 6 331 20 HOH HOH . 
P 5 HOH A 7 332 21 HOH HOH . 
P 5 HOH A 8 333 29 HOH HOH . 
P 5 HOH A 9 334 31 HOH HOH . 
P 5 HOH A 10 335 36 HOH HOH . 
P 5 HOH A 11 336 37 HOH HOH . 
P 5 HOH A 12 337 41 HOH HOH . 
P 5 HOH A 13 338 56 HOH HOH . 
Q 5 HOH B 1 326 2 HOH HOH . 
Q 5 HOH B 2 327 7 HOH HOH . 
Q 5 HOH B 3 328 11 HOH HOH . 
Q 5 HOH B 4 329 14 HOH HOH . 
Q 5 HOH B 5 330 17 HOH HOH . 
Q 5 HOH B 6 331 27 HOH HOH . 
Q 5 HOH B 7 332 30 HOH HOH . 
Q 5 HOH B 8 333 39 HOH HOH . 
Q 5 HOH B 9 334 42 HOH HOH . 
Q 5 HOH B 10 335 43 HOH HOH . 
Q 5 HOH B 11 336 46 HOH HOH . 
Q 5 HOH B 12 337 49 HOH HOH . 
Q 5 HOH B 13 338 51 HOH HOH . 
Q 5 HOH B 14 339 54 HOH HOH . 
Q 5 HOH B 15 340 58 HOH HOH . 
Q 5 HOH B 16 341 59 HOH HOH . 
R 5 HOH C 1 326 19 HOH HOH . 
R 5 HOH C 2 327 22 HOH HOH . 
R 5 HOH C 3 328 25 HOH HOH . 
R 5 HOH C 4 329 32 HOH HOH . 
R 5 HOH C 5 330 33 HOH HOH . 
R 5 HOH C 6 331 40 HOH HOH . 
R 5 HOH C 7 332 44 HOH HOH . 
R 5 HOH C 8 333 50 HOH HOH . 
R 5 HOH C 9 334 55 HOH HOH . 
R 5 HOH C 10 335 57 HOH HOH . 
S 5 HOH D 1 326 1 HOH HOH . 
S 5 HOH D 2 327 3 HOH HOH . 
S 5 HOH D 3 328 4 HOH HOH . 
S 5 HOH D 4 329 5 HOH HOH . 
S 5 HOH D 5 330 8 HOH HOH . 
S 5 HOH D 6 331 10 HOH HOH . 
S 5 HOH D 7 332 12 HOH HOH . 
S 5 HOH D 8 333 18 HOH HOH . 
S 5 HOH D 9 334 23 HOH HOH . 
S 5 HOH D 10 335 24 HOH HOH . 
S 5 HOH D 11 336 26 HOH HOH . 
S 5 HOH D 12 337 28 HOH HOH . 
S 5 HOH D 13 338 34 HOH HOH . 
S 5 HOH D 14 339 35 HOH HOH . 
S 5 HOH D 15 340 38 HOH HOH . 
S 5 HOH D 16 341 45 HOH HOH . 
S 5 HOH D 17 342 47 HOH HOH . 
S 5 HOH D 18 343 48 HOH HOH . 
S 5 HOH D 19 344 52 HOH HOH . 
S 5 HOH D 20 345 53 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         J 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               3.756 
_atom_site.Cartn_y               -1.401 
_atom_site.Cartn_z               24.445 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        48.77 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           404 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#