data_3AKM
#
_model_server_result.job_id            r-Pqq_dYf0pjsmQWOd1kGA 
_model_server_result.datetime_utc      '2024-11-25 09:43:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3akm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":132}' 
#
_entry.id    3AKM 
#
_exptl.entry_id    3AKM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              434.592 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '11-({[5-(dimethylamino)naphthalen-1-yl]sulfonyl}amino)undecanoic acid' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.48 
_cell.angle_gamma         90 
_cell.entry_id            3AKM 
_cell.length_a            51.02 
_cell.length_b            79.011 
_cell.length_c            63.24 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3AKM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,M 1 1 
B,G,H,N 2 1 
C,I,J,O 3 1 
D,K,L,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C23 H34 N2 O4 S' 
_chem_comp.formula_weight    434.592 
_chem_comp.id                11D 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '11-({[5-(dimethylamino)naphthalen-1-yl]sulfonyl}amino)undecanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '11-(Dansylamino)undecanoic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C1 11D doub 1 n y 
C1 C6 11D sing 2 n y 
C1 H1 11D sing 3 n n 
C7 C2 11D sing 4 n y 
C3 C2 11D sing 5 n y 
C10 C3 11D sing 6 n y 
C3 C4 11D doub 7 n y 
S14 C4 11D sing 8 n n 
C4 C5 11D sing 9 n y 
C5 C6 11D doub 10 n y 
C5 H5 11D sing 11 n n 
C6 H6 11D sing 12 n n 
C8 C7 11D doub 13 n y 
C7 N11 11D sing 14 n n 
C9 C8 11D sing 15 n y 
C8 H8 11D sing 16 n n 
C9 C10 11D doub 17 n y 
C9 H9 11D sing 18 n n 
C10 H10 11D sing 19 n n 
C13 N11 11D sing 20 n n 
N11 C12 11D sing 21 n n 
C12 H12 11D sing 22 n n 
C12 H12A 11D sing 23 n n 
C12 H12B 11D sing 24 n n 
C13 H13 11D sing 25 n n 
C13 H13A 11D sing 26 n n 
C13 H13B 11D sing 27 n n 
N17 S14 11D sing 28 n n 
S14 O16 11D doub 29 n n 
S14 O15 11D doub 30 n n 
C18 N17 11D sing 31 n n 
N17 HN17 11D sing 32 n n 
C18 C19 11D sing 33 n n 
C18 H18 11D sing 34 n n 
C18 H18A 11D sing 35 n n 
C20 C19 11D sing 36 n n 
C19 H19 11D sing 37 n n 
C19 H19A 11D sing 38 n n 
C20 C21 11D sing 39 n n 
C20 H20 11D sing 40 n n 
C20 H20A 11D sing 41 n n 
C22 C21 11D sing 42 n n 
C21 H21 11D sing 43 n n 
C21 H21A 11D sing 44 n n 
C23 C22 11D sing 45 n n 
C22 H22 11D sing 46 n n 
C22 H22A 11D sing 47 n n 
C24 C23 11D sing 48 n n 
C23 H23 11D sing 49 n n 
C23 H23A 11D sing 50 n n 
C25 C24 11D sing 51 n n 
C24 H24 11D sing 52 n n 
C24 H24A 11D sing 53 n n 
C26 C25 11D sing 54 n n 
C25 H25 11D sing 55 n n 
C25 H25A 11D sing 56 n n 
C27 C26 11D sing 57 n n 
C26 H26 11D sing 58 n n 
C26 H26A 11D sing 59 n n 
C28 C27 11D sing 60 n n 
C27 H27 11D sing 61 n n 
C27 H27A 11D sing 62 n n 
O29 C28 11D doub 63 n n 
C28 O30 11D sing 64 n n 
O30 HO30 11D sing 65 n n 
#
_atom_sites.entry_id                     3AKM 
_atom_sites.fract_transf_matrix[1][1]    0.0196 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001537 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012656 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015861 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 11D A 1 132 1 11D 11D . 
F 3 MG A 1 133 1 MG MG . 
G 2 11D B 1 132 1 11D 11D . 
H 3 MG B 1 133 1 MG MG . 
I 2 11D C 1 132 1 11D 11D . 
J 3 MG C 1 133 1 MG MG . 
K 2 11D D 1 132 1 11D 11D . 
L 3 MG D 1 133 1 MG MG . 
M 4 HOH A 1 134 7 HOH HOH . 
M 4 HOH A 2 135 10 HOH HOH . 
M 4 HOH A 3 136 11 HOH HOH . 
M 4 HOH A 4 137 16 HOH HOH . 
M 4 HOH A 5 138 19 HOH HOH . 
M 4 HOH A 6 139 22 HOH HOH . 
M 4 HOH A 7 140 23 HOH HOH . 
M 4 HOH A 8 141 25 HOH HOH . 
M 4 HOH A 9 142 26 HOH HOH . 
M 4 HOH A 10 143 27 HOH HOH . 
M 4 HOH A 11 144 30 HOH HOH . 
M 4 HOH A 12 145 32 HOH HOH . 
M 4 HOH A 13 146 39 HOH HOH . 
M 4 HOH A 14 147 41 HOH HOH . 
M 4 HOH A 15 148 42 HOH HOH . 
M 4 HOH A 16 149 43 HOH HOH . 
M 4 HOH A 17 150 45 HOH HOH . 
M 4 HOH A 18 151 55 HOH HOH . 
M 4 HOH A 19 152 60 HOH HOH . 
M 4 HOH A 20 153 61 HOH HOH . 
M 4 HOH A 21 154 88 HOH HOH . 
M 4 HOH A 22 155 89 HOH HOH . 
M 4 HOH A 23 156 91 HOH HOH . 
M 4 HOH A 24 157 95 HOH HOH . 
M 4 HOH A 25 158 97 HOH HOH . 
M 4 HOH A 26 159 99 HOH HOH . 
M 4 HOH A 27 160 101 HOH HOH . 
M 4 HOH A 28 161 103 HOH HOH . 
N 4 HOH B 1 134 2 HOH HOH . 
N 4 HOH B 2 135 6 HOH HOH . 
N 4 HOH B 3 136 12 HOH HOH . 
N 4 HOH B 4 137 20 HOH HOH . 
N 4 HOH B 5 138 24 HOH HOH . 
N 4 HOH B 6 139 31 HOH HOH . 
N 4 HOH B 7 140 33 HOH HOH . 
N 4 HOH B 8 141 35 HOH HOH . 
N 4 HOH B 9 142 38 HOH HOH . 
N 4 HOH B 10 143 44 HOH HOH . 
N 4 HOH B 11 144 50 HOH HOH . 
N 4 HOH B 12 145 52 HOH HOH . 
N 4 HOH B 13 146 53 HOH HOH . 
N 4 HOH B 14 147 54 HOH HOH . 
N 4 HOH B 15 148 58 HOH HOH . 
N 4 HOH B 16 149 62 HOH HOH . 
N 4 HOH B 17 150 66 HOH HOH . 
N 4 HOH B 18 151 67 HOH HOH . 
N 4 HOH B 19 152 68 HOH HOH . 
N 4 HOH B 20 153 69 HOH HOH . 
N 4 HOH B 21 154 81 HOH HOH . 
N 4 HOH B 22 155 84 HOH HOH . 
N 4 HOH B 23 156 87 HOH HOH . 
N 4 HOH B 24 157 90 HOH HOH . 
N 4 HOH B 25 158 94 HOH HOH . 
N 4 HOH B 26 159 98 HOH HOH . 
N 4 HOH B 27 160 100 HOH HOH . 
O 4 HOH C 1 134 4 HOH HOH . 
O 4 HOH C 2 135 8 HOH HOH . 
O 4 HOH C 3 136 13 HOH HOH . 
O 4 HOH C 4 137 15 HOH HOH . 
O 4 HOH C 5 138 17 HOH HOH . 
O 4 HOH C 6 139 18 HOH HOH . 
O 4 HOH C 7 140 29 HOH HOH . 
O 4 HOH C 8 141 36 HOH HOH . 
O 4 HOH C 9 142 46 HOH HOH . 
O 4 HOH C 10 143 47 HOH HOH . 
O 4 HOH C 11 144 49 HOH HOH . 
O 4 HOH C 12 145 51 HOH HOH . 
O 4 HOH C 13 146 56 HOH HOH . 
O 4 HOH C 14 147 63 HOH HOH . 
O 4 HOH C 15 148 64 HOH HOH . 
O 4 HOH C 16 149 65 HOH HOH . 
O 4 HOH C 17 150 70 HOH HOH . 
O 4 HOH C 18 152 80 HOH HOH . 
O 4 HOH C 19 153 82 HOH HOH . 
O 4 HOH C 20 154 83 HOH HOH . 
O 4 HOH C 21 155 86 HOH HOH . 
O 4 HOH C 22 156 92 HOH HOH . 
P 4 HOH D 1 134 1 HOH HOH . 
P 4 HOH D 2 135 3 HOH HOH . 
P 4 HOH D 3 136 5 HOH HOH . 
P 4 HOH D 4 137 9 HOH HOH . 
P 4 HOH D 5 138 14 HOH HOH . 
P 4 HOH D 6 139 21 HOH HOH . 
P 4 HOH D 7 140 28 HOH HOH . 
P 4 HOH D 8 141 34 HOH HOH . 
P 4 HOH D 9 142 37 HOH HOH . 
P 4 HOH D 10 143 40 HOH HOH . 
P 4 HOH D 11 144 48 HOH HOH . 
P 4 HOH D 12 145 57 HOH HOH . 
P 4 HOH D 13 146 59 HOH HOH . 
P 4 HOH D 14 147 71 HOH HOH . 
P 4 HOH D 15 148 72 HOH HOH . 
P 4 HOH D 16 149 73 HOH HOH . 
P 4 HOH D 17 150 74 HOH HOH . 
P 4 HOH D 18 151 79 HOH HOH . 
P 4 HOH D 19 152 76 HOH HOH . 
P 4 HOH D 20 153 77 HOH HOH . 
P 4 HOH D 21 154 78 HOH HOH . 
P 4 HOH D 22 155 85 HOH HOH . 
P 4 HOH D 23 156 93 HOH HOH . 
P 4 HOH D 24 157 96 HOH HOH . 
P 4 HOH D 25 158 102 HOH HOH . 
P 4 HOH D 26 159 104 HOH HOH . 
P 4 HOH D 27 160 105 HOH HOH . 
P 4 HOH D 28 161 106 HOH HOH . 
P 4 HOH D 29 162 75 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 11D . . . E 2 14.465 -14.932 24.474 1 23.21 ? C1 11D 132 A 1 
HETATM 2 C C2 11D . . . E 2 14.347 -13.555 24.532 1 24.65 ? C2 11D 132 A 1 
HETATM 3 C C3 11D . . . E 2 15.562 -12.721 24.331 1 24.07 ? C3 11D 132 A 1 
HETATM 4 C C4 11D . . . E 2 16.877 -13.354 24.071 1 22.61 ? C4 11D 132 A 1 
HETATM 5 C C5 11D . . . E 2 16.843 -14.733 24.038 1 21.83 ? C5 11D 132 A 1 
HETATM 6 C C6 11D . . . E 2 15.693 -15.499 24.216 1 21.45 ? C6 11D 132 A 1 
HETATM 7 C C7 11D . . . E 2 13.036 -12.878 24.82 1 28.64 ? C7 11D 132 A 1 
HETATM 8 C C8 11D . . . E 2 13.006 -11.485 24.868 1 29.2 ? C8 11D 132 A 1 
HETATM 9 C C9 11D . . . E 2 14.175 -10.752 24.666 1 29.56 ? C9 11D 132 A 1 
HETATM 10 C C10 11D . . . E 2 15.425 -11.345 24.412 1 26.64 ? C10 11D 132 A 1 
HETATM 11 N N11 11D . . . E 2 11.817 -13.554 24.987 1 30.96 ? N11 11D 132 A 1 
HETATM 12 C C12 11D . . . E 2 11.353 -14.451 23.938 1 28.03 ? C12 11D 132 A 1 
HETATM 13 C C13 11D . . . E 2 10.971 -13.24 26.134 1 30.84 ? C13 11D 132 A 1 
HETATM 14 S S14 11D . . . E 2 18.309 -12.551 23.826 1 22.8 ? S14 11D 132 A 1 
HETATM 15 O O15 11D . . . E 2 19.308 -13.603 23.611 1 23.56 ? O15 11D 132 A 1 
HETATM 16 O O16 11D . . . E 2 18.259 -11.678 22.669 1 24.14 ? O16 11D 132 A 1 
HETATM 17 N N17 11D . . . E 2 18.653 -11.573 25.056 1 22.16 ? N17 11D 132 A 1 
HETATM 18 C C18 11D . . . E 2 18.941 -12.108 26.361 1 22.91 ? C18 11D 132 A 1 
HETATM 19 C C19 11D . . . E 2 20.402 -12.487 26.34 1 21.08 ? C19 11D 132 A 1 
HETATM 20 C C20 11D . . . E 2 20.875 -12.782 27.734 1 21.56 ? C20 11D 132 A 1 
HETATM 21 C C21 11D . . . E 2 22.263 -13.394 27.573 1 19.89 ? C21 11D 132 A 1 
HETATM 22 C C22 11D . . . E 2 23.111 -13.252 28.8 1 21.38 ? C22 11D 132 A 1 
HETATM 23 C C23 11D . . . E 2 23.713 -14.57 29.208 1 23 ? C23 11D 132 A 1 
HETATM 24 C C24 11D . . . E 2 24.239 -14.423 30.618 1 22.29 ? C24 11D 132 A 1 
HETATM 25 C C25 11D . . . E 2 23.43 -15.155 31.657 1 21.67 ? C25 11D 132 A 1 
HETATM 26 C C26 11D . . . E 2 23.023 -14.181 32.716 1 20.51 ? C26 11D 132 A 1 
HETATM 27 C C27 11D . . . E 2 22.997 -14.769 34.081 1 21.4 ? C27 11D 132 A 1 
HETATM 28 C C28 11D . . . E 2 23.261 -13.547 34.942 1 25.07 ? C28 11D 132 A 1 
HETATM 29 O O29 11D . . . E 2 22.436 -12.59 35.053 1 31.01 ? O29 11D 132 A 1 
HETATM 30 O O30 11D . . . E 2 24.359 -13.484 35.476 1 23.49 ? O30 11D 132 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           30 
#