data_3AKN # _model_server_result.job_id IB-FYiigJ0akgFBkTkpPiw _model_server_result.datetime_utc '2024-10-14 08:23:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3akn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":132}' # _entry.id 3AKN # _exptl.entry_id 3AKN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 434.592 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '11-({[5-(dimethylamino)naphthalen-1-yl]sulfonyl}amino)undecanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AKN _cell.length_a 50.59 _cell.length_b 50.59 _cell.length_c 97.452 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AKN _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H34 N2 O4 S' _chem_comp.formula_weight 434.592 _chem_comp.id 11D _chem_comp.mon_nstd_flag . _chem_comp.name '11-({[5-(dimethylamino)naphthalen-1-yl]sulfonyl}amino)undecanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '11-(Dansylamino)undecanoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 11D doub 1 n y C1 C6 11D sing 2 n y C1 H1 11D sing 3 n n C7 C2 11D sing 4 n y C3 C2 11D sing 5 n y C10 C3 11D sing 6 n y C3 C4 11D doub 7 n y S14 C4 11D sing 8 n n C4 C5 11D sing 9 n y C5 C6 11D doub 10 n y C5 H5 11D sing 11 n n C6 H6 11D sing 12 n n C8 C7 11D doub 13 n y C7 N11 11D sing 14 n n C9 C8 11D sing 15 n y C8 H8 11D sing 16 n n C9 C10 11D doub 17 n y C9 H9 11D sing 18 n n C10 H10 11D sing 19 n n C13 N11 11D sing 20 n n N11 C12 11D sing 21 n n C12 H12 11D sing 22 n n C12 H12A 11D sing 23 n n C12 H12B 11D sing 24 n n C13 H13 11D sing 25 n n C13 H13A 11D sing 26 n n C13 H13B 11D sing 27 n n N17 S14 11D sing 28 n n S14 O16 11D doub 29 n n S14 O15 11D doub 30 n n C18 N17 11D sing 31 n n N17 HN17 11D sing 32 n n C18 C19 11D sing 33 n n C18 H18 11D sing 34 n n C18 H18A 11D sing 35 n n C20 C19 11D sing 36 n n C19 H19 11D sing 37 n n C19 H19A 11D sing 38 n n C20 C21 11D sing 39 n n C20 H20 11D sing 40 n n C20 H20A 11D sing 41 n n C22 C21 11D sing 42 n n C21 H21 11D sing 43 n n C21 H21A 11D sing 44 n n C23 C22 11D sing 45 n n C22 H22 11D sing 46 n n C22 H22A 11D sing 47 n n C24 C23 11D sing 48 n n C23 H23 11D sing 49 n n C23 H23A 11D sing 50 n n C25 C24 11D sing 51 n n C24 H24 11D sing 52 n n C24 H24A 11D sing 53 n n C26 C25 11D sing 54 n n C25 H25 11D sing 55 n n C25 H25A 11D sing 56 n n C27 C26 11D sing 57 n n C26 H26 11D sing 58 n n C26 H26A 11D sing 59 n n C28 C27 11D sing 60 n n C27 H27 11D sing 61 n n C27 H27A 11D sing 62 n n O29 C28 11D doub 63 n n C28 O30 11D sing 64 n n O30 HO30 11D sing 65 n n # _atom_sites.entry_id 3AKN _atom_sites.fract_transf_matrix[1][1] 0.019767 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019767 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010261 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 11D A 1 132 1 11D DAU . C 3 HOH A 1 133 1 HOH HOH . C 3 HOH A 2 134 2 HOH HOH . C 3 HOH A 3 135 3 HOH HOH . C 3 HOH A 4 136 4 HOH HOH . C 3 HOH A 5 137 5 HOH HOH . C 3 HOH A 6 138 6 HOH HOH . C 3 HOH A 7 139 7 HOH HOH . C 3 HOH A 8 140 8 HOH HOH . C 3 HOH A 9 141 9 HOH HOH . C 3 HOH A 10 142 10 HOH HOH . C 3 HOH A 11 143 11 HOH HOH . C 3 HOH A 12 144 12 HOH HOH . C 3 HOH A 13 145 13 HOH HOH . C 3 HOH A 14 146 14 HOH HOH . C 3 HOH A 15 147 15 HOH HOH . C 3 HOH A 16 148 16 HOH HOH . C 3 HOH A 17 149 17 HOH HOH . C 3 HOH A 18 150 18 HOH HOH . C 3 HOH A 19 151 19 HOH HOH . C 3 HOH A 20 152 20 HOH HOH . C 3 HOH A 21 153 21 HOH HOH . C 3 HOH A 22 154 22 HOH HOH . C 3 HOH A 23 155 23 HOH HOH . C 3 HOH A 24 156 24 HOH HOH . C 3 HOH A 25 157 25 HOH HOH . C 3 HOH A 26 158 26 HOH HOH . C 3 HOH A 27 159 27 HOH HOH . C 3 HOH A 28 160 28 HOH HOH . C 3 HOH A 29 161 29 HOH HOH . C 3 HOH A 30 162 30 HOH HOH . C 3 HOH A 31 163 31 HOH HOH . C 3 HOH A 32 164 32 HOH HOH . C 3 HOH A 33 165 33 HOH HOH . C 3 HOH A 34 166 34 HOH HOH . C 3 HOH A 35 167 35 HOH HOH . C 3 HOH A 36 168 36 HOH HOH . C 3 HOH A 37 169 37 HOH HOH . C 3 HOH A 38 170 38 HOH HOH . C 3 HOH A 39 171 39 HOH HOH . C 3 HOH A 40 172 40 HOH HOH . C 3 HOH A 41 173 41 HOH HOH . C 3 HOH A 42 174 42 HOH HOH . C 3 HOH A 43 175 43 HOH HOH . C 3 HOH A 44 176 44 HOH HOH . C 3 HOH A 45 177 45 HOH HOH . C 3 HOH A 46 178 46 HOH HOH . C 3 HOH A 47 179 47 HOH HOH . C 3 HOH A 48 180 48 HOH HOH . C 3 HOH A 49 181 49 HOH HOH . C 3 HOH A 50 182 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 11D . . . B 2 23.2 -20.379 8.681 1 14.56 ? C1 11D 132 A 1 HETATM 2 C C2 11D . . . B 2 23.644 -19.095 9.031 1 14.02 ? C2 11D 132 A 1 HETATM 3 C C3 11D . . . B 2 22.679 -17.98 9.235 1 13.44 ? C3 11D 132 A 1 HETATM 4 C C4 11D . . . B 2 21.225 -18.274 9.047 1 13.68 ? C4 11D 132 A 1 HETATM 5 C C5 11D . . . B 2 20.888 -19.597 8.724 1 13.49 ? C5 11D 132 A 1 HETATM 6 C C6 11D . . . B 2 21.839 -20.599 8.538 1 13.94 ? C6 11D 132 A 1 HETATM 7 C C7 11D . . . B 2 25.083 -18.79 9.185 1 13.68 ? C7 11D 132 A 1 HETATM 8 C C8 11D . . . B 2 25.452 -17.5 9.558 1 14.64 ? C8 11D 132 A 1 HETATM 9 C C9 11D . . . B 2 24.504 -16.48 9.751 1 13.83 ? C9 11D 132 A 1 HETATM 10 C C10 11D . . . B 2 23.131 -16.706 9.585 1 14.2 ? C10 11D 132 A 1 HETATM 11 N N11 11D . . . B 2 26.102 -19.74 9.113 1 15.14 ? N11 11D 132 A 1 HETATM 12 C C12 11D . . . B 2 26.046 -20.844 10.048 1 14.31 ? C12 11D 132 A 1 HETATM 13 C C13 11D . . . B 2 27.345 -19.553 8.371 1 17.75 ? C13 11D 132 A 1 HETATM 14 S S14 11D . . . B 2 20.08 -17.149 9.257 1 13.54 ? S14 11D 132 A 1 HETATM 15 O O15 11D . . . B 2 20.17 -16.547 10.56 1 12.94 ? O15 11D 132 A 1 HETATM 16 O O16 11D . . . B 2 18.801 -17.756 9.012 1 15.33 ? O16 11D 132 A 1 HETATM 17 N N17 11D . . . B 2 20.219 -16.012 8.139 1 13.04 ? N17 11D 132 A 1 HETATM 18 C C18 11D . . . B 2 19.992 -16.303 6.731 1 14.76 ? C18 11D 132 A 1 HETATM 19 C C19 11D . . . B 2 18.531 -16.077 6.329 1 16.98 ? C19 11D 132 A 1 HETATM 20 C C20 11D . . . B 2 18.343 -16.31 4.841 1 20.15 ? C20 11D 132 A 1 HETATM 21 C C21 11D . . . B 2 16.866 -16.463 4.463 1 19.24 ? C21 11D 132 A 1 HETATM 22 C C22 11D . . . B 2 16.792 -16.673 2.945 1 23.74 ? C22 11D 132 A 1 HETATM 23 C C23 11D . . . B 2 15.373 -16.563 2.377 1 25.13 ? C23 11D 132 A 1 HETATM 24 C C24 11D . . . B 2 15.189 -17.422 1.117 1 24.42 ? C24 11D 132 A 1 HETATM 25 C C25 11D . . . B 2 16.046 -16.961 -0.061 1 26.99 ? C25 11D 132 A 1 HETATM 26 C C26 11D . . . B 2 15.67 -17.733 -1.324 1 26.35 ? C26 11D 132 A 1 HETATM 27 C C27 11D . . . B 2 16.55 -17.389 -2.523 1 24.61 ? C27 11D 132 A 1 HETATM 28 C C28 11D . . . B 2 16.438 -15.949 -2.973 1 25.87 ? C28 11D 132 A 1 HETATM 29 O O29 11D . . . B 2 15.339 -15.548 -3.384 1 23.31 ? O29 11D 132 A 1 HETATM 30 O O30 11D . . . B 2 17.438 -15.189 -2.924 1 24.08 ? O30 11D 132 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 30 #