data_3AKR # _model_server_result.job_id wnCxmqtnVCF8mNAxiSdWtw _model_server_result.datetime_utc '2024-11-09 02:05:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3akr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":193}' # _entry.id 3AKR # _exptl.entry_id 3AKR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.48 _cell.angle_gamma 90 _cell.entry_id 3AKR _cell.length_a 56.755 _cell.length_b 38.904 _cell.length_c 40.214 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AKR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PCA 1 A PCA 1 1_555 A N THR 2 A THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? metalc ? metalc1 A OD1 ASN 92 A ASN 92 1_555 D NA NA . A NA 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc2 A O PHE 93 A PHE 93 1_555 D NA NA . A NA 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc3 A O ASN 124 A ASN 124 1_555 C NA NA . A NA 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc4 A OE1 GLN 125 A GLN 125 1_555 C NA NA . A NA 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc5 C NA NA . A NA 192 1_555 E O HOH . A HOH 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc6 C NA NA . A NA 192 1_555 E O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc7 C NA NA . A NA 192 1_555 E O HOH . A HOH 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc8 C NA NA . A NA 192 1_555 E O HOH . A HOH 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc9 D NA NA . A NA 193 1_555 E O HOH . A HOH 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc10 D NA NA . A NA 193 1_555 E O HOH . A HOH 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc11 D NA NA . A NA 193 1_555 E O HOH . A HOH 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3AKR _atom_sites.fract_transf_matrix[1][1] 0.01762 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006581 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025704 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026545 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 191 1 GOL GOL . C 3 NA A 1 192 1 NA NA1 . D 3 NA A 1 193 2 NA NA1 . E 4 HOH A 1 194 194 HOH HOH . E 4 HOH A 2 195 195 HOH HOH . E 4 HOH A 3 196 196 HOH HOH . E 4 HOH A 4 197 197 HOH HOH . E 4 HOH A 5 198 198 HOH HOH . E 4 HOH A 6 199 199 HOH HOH . E 4 HOH A 7 200 200 HOH HOH . E 4 HOH A 8 201 201 HOH HOH . E 4 HOH A 9 202 202 HOH HOH . E 4 HOH A 10 203 203 HOH HOH . E 4 HOH A 11 204 204 HOH HOH . E 4 HOH A 12 205 205 HOH HOH . E 4 HOH A 13 206 206 HOH HOH . E 4 HOH A 14 207 207 HOH HOH . E 4 HOH A 15 208 208 HOH HOH . E 4 HOH A 16 209 209 HOH HOH . E 4 HOH A 17 210 210 HOH HOH . E 4 HOH A 18 211 211 HOH HOH . E 4 HOH A 19 212 212 HOH HOH . E 4 HOH A 20 213 213 HOH HOH . E 4 HOH A 21 214 214 HOH HOH . E 4 HOH A 22 215 215 HOH HOH . E 4 HOH A 23 216 216 HOH HOH . E 4 HOH A 24 217 217 HOH HOH . E 4 HOH A 25 218 218 HOH HOH . E 4 HOH A 26 219 219 HOH HOH . E 4 HOH A 27 220 220 HOH HOH . E 4 HOH A 28 221 221 HOH HOH . E 4 HOH A 29 222 222 HOH HOH . E 4 HOH A 30 223 223 HOH HOH . E 4 HOH A 31 224 224 HOH HOH . E 4 HOH A 32 225 225 HOH HOH . E 4 HOH A 33 226 226 HOH HOH . E 4 HOH A 34 227 227 HOH HOH . E 4 HOH A 35 228 228 HOH HOH . E 4 HOH A 36 229 229 HOH HOH . E 4 HOH A 37 230 230 HOH HOH . E 4 HOH A 38 231 231 HOH HOH . E 4 HOH A 39 232 232 HOH HOH . E 4 HOH A 40 233 233 HOH HOH . E 4 HOH A 41 234 234 HOH HOH . E 4 HOH A 42 235 235 HOH HOH . E 4 HOH A 43 236 236 HOH HOH . E 4 HOH A 44 237 237 HOH HOH . E 4 HOH A 45 238 238 HOH HOH . E 4 HOH A 46 239 239 HOH HOH . E 4 HOH A 47 240 240 HOH HOH . E 4 HOH A 48 241 241 HOH HOH . E 4 HOH A 49 242 242 HOH HOH . E 4 HOH A 50 243 243 HOH HOH . E 4 HOH A 51 244 244 HOH HOH . E 4 HOH A 52 245 245 HOH HOH . E 4 HOH A 53 246 246 HOH HOH . E 4 HOH A 54 247 247 HOH HOH . E 4 HOH A 55 248 248 HOH HOH . E 4 HOH A 56 249 249 HOH HOH . E 4 HOH A 57 250 250 HOH HOH . E 4 HOH A 58 251 251 HOH HOH . E 4 HOH A 59 252 252 HOH HOH . E 4 HOH A 60 253 253 HOH HOH . E 4 HOH A 61 254 254 HOH HOH . E 4 HOH A 62 255 255 HOH HOH . E 4 HOH A 63 256 256 HOH HOH . E 4 HOH A 64 257 257 HOH HOH . E 4 HOH A 65 258 258 HOH HOH . E 4 HOH A 66 259 259 HOH HOH . E 4 HOH A 67 260 260 HOH HOH . E 4 HOH A 68 261 261 HOH HOH . E 4 HOH A 69 262 262 HOH HOH . E 4 HOH A 70 263 263 HOH HOH . E 4 HOH A 71 264 264 HOH HOH . E 4 HOH A 72 265 265 HOH HOH . E 4 HOH A 73 266 266 HOH HOH . E 4 HOH A 74 267 267 HOH HOH . E 4 HOH A 75 268 268 HOH HOH . E 4 HOH A 76 269 269 HOH HOH . E 4 HOH A 77 270 270 HOH HOH . E 4 HOH A 78 271 271 HOH HOH . E 4 HOH A 79 272 272 HOH HOH . E 4 HOH A 80 273 273 HOH HOH . E 4 HOH A 81 274 1 HOH HOH . E 4 HOH A 82 275 2 HOH HOH . E 4 HOH A 83 276 3 HOH HOH . E 4 HOH A 84 277 4 HOH HOH . E 4 HOH A 85 278 5 HOH HOH . E 4 HOH A 86 279 6 HOH HOH . E 4 HOH A 87 280 7 HOH HOH . E 4 HOH A 88 281 8 HOH HOH . E 4 HOH A 89 282 9 HOH HOH . E 4 HOH A 90 283 10 HOH HOH . E 4 HOH A 91 284 11 HOH HOH . E 4 HOH A 92 285 12 HOH HOH . E 4 HOH A 93 286 13 HOH HOH . E 4 HOH A 94 287 14 HOH HOH . E 4 HOH A 95 288 15 HOH HOH . E 4 HOH A 96 289 16 HOH HOH . E 4 HOH A 97 290 17 HOH HOH . E 4 HOH A 98 291 18 HOH HOH . E 4 HOH A 99 292 19 HOH HOH . E 4 HOH A 100 293 20 HOH HOH . E 4 HOH A 101 294 21 HOH HOH . E 4 HOH A 102 295 22 HOH HOH . E 4 HOH A 103 296 23 HOH HOH . E 4 HOH A 104 297 24 HOH HOH . E 4 HOH A 105 298 25 HOH HOH . E 4 HOH A 106 299 26 HOH HOH . E 4 HOH A 107 300 27 HOH HOH . E 4 HOH A 108 301 28 HOH HOH . E 4 HOH A 109 302 29 HOH HOH . E 4 HOH A 110 303 30 HOH HOH . E 4 HOH A 111 304 31 HOH HOH . E 4 HOH A 112 305 32 HOH HOH . E 4 HOH A 113 306 33 HOH HOH . E 4 HOH A 114 307 34 HOH HOH . E 4 HOH A 115 308 35 HOH HOH . E 4 HOH A 116 309 36 HOH HOH . E 4 HOH A 117 310 37 HOH HOH . E 4 HOH A 118 311 38 HOH HOH . E 4 HOH A 119 312 39 HOH HOH . E 4 HOH A 120 313 40 HOH HOH . E 4 HOH A 121 314 41 HOH HOH . E 4 HOH A 122 315 42 HOH HOH . E 4 HOH A 123 316 43 HOH HOH . E 4 HOH A 124 317 44 HOH HOH . E 4 HOH A 125 318 45 HOH HOH . E 4 HOH A 126 319 46 HOH HOH . E 4 HOH A 127 320 47 HOH HOH . E 4 HOH A 128 321 48 HOH HOH . E 4 HOH A 129 322 49 HOH HOH . E 4 HOH A 130 323 50 HOH HOH . E 4 HOH A 131 324 51 HOH HOH . E 4 HOH A 132 325 52 HOH HOH . E 4 HOH A 133 326 53 HOH HOH . E 4 HOH A 134 327 54 HOH HOH . E 4 HOH A 135 328 55 HOH HOH . E 4 HOH A 136 329 56 HOH HOH . E 4 HOH A 137 330 57 HOH HOH . E 4 HOH A 138 331 58 HOH HOH . E 4 HOH A 139 332 59 HOH HOH . E 4 HOH A 140 333 60 HOH HOH . E 4 HOH A 141 334 61 HOH HOH . E 4 HOH A 142 335 62 HOH HOH . E 4 HOH A 143 336 63 HOH HOH . E 4 HOH A 144 337 64 HOH HOH . E 4 HOH A 145 338 65 HOH HOH . E 4 HOH A 146 339 66 HOH HOH . E 4 HOH A 147 340 67 HOH HOH . E 4 HOH A 148 341 68 HOH HOH . E 4 HOH A 149 342 69 HOH HOH . E 4 HOH A 150 343 70 HOH HOH . E 4 HOH A 151 344 71 HOH HOH . E 4 HOH A 152 345 72 HOH HOH . E 4 HOH A 153 346 73 HOH HOH . E 4 HOH A 154 347 74 HOH HOH . E 4 HOH A 155 348 75 HOH HOH . E 4 HOH A 156 349 76 HOH HOH . E 4 HOH A 157 350 77 HOH HOH . E 4 HOH A 158 351 78 HOH HOH . E 4 HOH A 159 352 79 HOH HOH . E 4 HOH A 160 353 80 HOH HOH . E 4 HOH A 161 354 81 HOH HOH . E 4 HOH A 162 355 82 HOH HOH . E 4 HOH A 163 356 83 HOH HOH . E 4 HOH A 164 357 84 HOH HOH . E 4 HOH A 165 358 85 HOH HOH . E 4 HOH A 166 359 86 HOH HOH . E 4 HOH A 167 360 87 HOH HOH . E 4 HOH A 168 361 88 HOH HOH . E 4 HOH A 169 362 89 HOH HOH . E 4 HOH A 170 363 90 HOH HOH . E 4 HOH A 171 364 91 HOH HOH . E 4 HOH A 172 365 92 HOH HOH . E 4 HOH A 173 366 93 HOH HOH . E 4 HOH A 174 367 94 HOH HOH . E 4 HOH A 175 368 95 HOH HOH . E 4 HOH A 176 369 96 HOH HOH . E 4 HOH A 177 370 97 HOH HOH . E 4 HOH A 178 371 98 HOH HOH . E 4 HOH A 179 372 99 HOH HOH . E 4 HOH A 180 373 100 HOH HOH . E 4 HOH A 181 374 101 HOH HOH . E 4 HOH A 182 375 102 HOH HOH . E 4 HOH A 183 376 103 HOH HOH . E 4 HOH A 184 377 104 HOH HOH . E 4 HOH A 185 378 105 HOH HOH . E 4 HOH A 186 379 106 HOH HOH . E 4 HOH A 187 380 107 HOH HOH . E 4 HOH A 188 381 108 HOH HOH . E 4 HOH A 189 382 109 HOH HOH . E 4 HOH A 190 383 110 HOH HOH . E 4 HOH A 191 384 111 HOH HOH . E 4 HOH A 192 385 112 HOH HOH . E 4 HOH A 193 386 113 HOH HOH . E 4 HOH A 194 387 114 HOH HOH . E 4 HOH A 195 388 115 HOH HOH . E 4 HOH A 196 389 116 HOH HOH . E 4 HOH A 197 390 117 HOH HOH . E 4 HOH A 198 391 118 HOH HOH . E 4 HOH A 199 392 119 HOH HOH . E 4 HOH A 200 393 120 HOH HOH . E 4 HOH A 201 394 121 HOH HOH . E 4 HOH A 202 395 122 HOH HOH . E 4 HOH A 203 396 123 HOH HOH . E 4 HOH A 204 397 124 HOH HOH . E 4 HOH A 205 398 125 HOH HOH . E 4 HOH A 206 399 126 HOH HOH . E 4 HOH A 207 400 127 HOH HOH . E 4 HOH A 208 401 128 HOH HOH . E 4 HOH A 209 402 129 HOH HOH . E 4 HOH A 210 403 130 HOH HOH . E 4 HOH A 211 404 131 HOH HOH . E 4 HOH A 212 405 132 HOH HOH . E 4 HOH A 213 406 133 HOH HOH . E 4 HOH A 214 407 134 HOH HOH . E 4 HOH A 215 408 135 HOH HOH . E 4 HOH A 216 409 136 HOH HOH . E 4 HOH A 217 410 137 HOH HOH . E 4 HOH A 218 411 138 HOH HOH . E 4 HOH A 219 412 139 HOH HOH . E 4 HOH A 220 413 140 HOH HOH . E 4 HOH A 221 414 141 HOH HOH . E 4 HOH A 222 415 142 HOH HOH . E 4 HOH A 223 416 143 HOH HOH . E 4 HOH A 224 417 144 HOH HOH . E 4 HOH A 225 418 145 HOH HOH . E 4 HOH A 226 419 146 HOH HOH . E 4 HOH A 227 420 147 HOH HOH . E 4 HOH A 228 421 148 HOH HOH . E 4 HOH A 229 422 149 HOH HOH . E 4 HOH A 230 423 150 HOH HOH . E 4 HOH A 231 424 151 HOH HOH . E 4 HOH A 232 425 152 HOH HOH . E 4 HOH A 233 426 153 HOH HOH . E 4 HOH A 234 427 154 HOH HOH . E 4 HOH A 235 428 155 HOH HOH . E 4 HOH A 236 429 156 HOH HOH . E 4 HOH A 237 430 157 HOH HOH . E 4 HOH A 238 431 158 HOH HOH . E 4 HOH A 239 432 159 HOH HOH . E 4 HOH A 240 433 160 HOH HOH . E 4 HOH A 241 434 161 HOH HOH . E 4 HOH A 242 435 162 HOH HOH . E 4 HOH A 243 436 163 HOH HOH . E 4 HOH A 244 437 164 HOH HOH . E 4 HOH A 245 438 165 HOH HOH . E 4 HOH A 246 439 166 HOH HOH . E 4 HOH A 247 440 167 HOH HOH . E 4 HOH A 248 441 168 HOH HOH . E 4 HOH A 249 442 169 HOH HOH . E 4 HOH A 250 443 170 HOH HOH . E 4 HOH A 251 444 171 HOH HOH . E 4 HOH A 252 445 172 HOH HOH . E 4 HOH A 253 446 173 HOH HOH . E 4 HOH A 254 447 174 HOH HOH . E 4 HOH A 255 448 175 HOH HOH . E 4 HOH A 256 449 176 HOH HOH . E 4 HOH A 257 450 177 HOH HOH . E 4 HOH A 258 451 178 HOH HOH . E 4 HOH A 259 452 179 HOH HOH . E 4 HOH A 260 453 180 HOH HOH . E 4 HOH A 261 454 181 HOH HOH . E 4 HOH A 262 455 182 HOH HOH . E 4 HOH A 263 456 183 HOH HOH . E 4 HOH A 264 457 184 HOH HOH . E 4 HOH A 265 458 185 HOH HOH . E 4 HOH A 266 459 186 HOH HOH . E 4 HOH A 267 460 187 HOH HOH . E 4 HOH A 268 461 188 HOH HOH . E 4 HOH A 269 462 189 HOH HOH . E 4 HOH A 270 463 190 HOH HOH . E 4 HOH A 271 464 191 HOH HOH . E 4 HOH A 272 465 192 HOH HOH . E 4 HOH A 273 466 193 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -1.616 _atom_site.Cartn_y -0.449 _atom_site.Cartn_z 12.64 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.73 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 193 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #