data_3AKS # _model_server_result.job_id '_RMSI04Q6zP83pVTOXvh2w' _model_server_result.datetime_utc '2024-11-13 00:02:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3aks # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":191}' # _entry.id 3AKS # _exptl.entry_id 3AKS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.47 _cell.angle_gamma 90 _cell.entry_id 3AKS _cell.length_a 56.629 _cell.length_b 38.915 _cell.length_c 40.199 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AKS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PCA 1 A PCA 1 1_555 A N THR 2 A THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? metalc ? metalc1 A O ASN 124 A ASN 124 1_555 C NA NA . A NA 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc2 A OE1 GLN 125 A GLN 125 1_555 C NA NA . A NA 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc3 C NA NA . A NA 192 1_555 D O HOH . A HOH 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc4 C NA NA . A NA 192 1_555 D O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc5 C NA NA . A NA 192 1_555 D O HOH . A HOH 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc6 C NA NA . A NA 192 1_555 D O HOH . A HOH 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 3AKS _atom_sites.fract_transf_matrix[1][1] 0.017659 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006592 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025697 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026553 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 191 1 GOL GOL . C 3 NA A 1 192 1 NA NA1 . D 4 HOH A 1 193 193 HOH HOH . D 4 HOH A 2 194 194 HOH HOH . D 4 HOH A 3 195 195 HOH HOH . D 4 HOH A 4 196 196 HOH HOH . D 4 HOH A 5 197 197 HOH HOH . D 4 HOH A 6 198 198 HOH HOH . D 4 HOH A 7 199 199 HOH HOH . D 4 HOH A 8 200 200 HOH HOH . D 4 HOH A 9 201 201 HOH HOH . D 4 HOH A 10 202 202 HOH HOH . D 4 HOH A 11 203 203 HOH HOH . D 4 HOH A 12 204 204 HOH HOH . D 4 HOH A 13 205 205 HOH HOH . D 4 HOH A 14 206 206 HOH HOH . D 4 HOH A 15 207 207 HOH HOH . D 4 HOH A 16 208 208 HOH HOH . D 4 HOH A 17 209 209 HOH HOH . D 4 HOH A 18 210 210 HOH HOH . D 4 HOH A 19 211 211 HOH HOH . D 4 HOH A 20 212 212 HOH HOH . D 4 HOH A 21 213 213 HOH HOH . D 4 HOH A 22 214 214 HOH HOH . D 4 HOH A 23 215 215 HOH HOH . D 4 HOH A 24 216 216 HOH HOH . D 4 HOH A 25 217 217 HOH HOH . D 4 HOH A 26 218 218 HOH HOH . D 4 HOH A 27 219 219 HOH HOH . D 4 HOH A 28 220 220 HOH HOH . D 4 HOH A 29 221 221 HOH HOH . D 4 HOH A 30 222 222 HOH HOH . D 4 HOH A 31 223 223 HOH HOH . D 4 HOH A 32 224 224 HOH HOH . D 4 HOH A 33 225 225 HOH HOH . D 4 HOH A 34 226 226 HOH HOH . D 4 HOH A 35 227 227 HOH HOH . D 4 HOH A 36 228 228 HOH HOH . D 4 HOH A 37 229 229 HOH HOH . D 4 HOH A 38 230 230 HOH HOH . D 4 HOH A 39 231 231 HOH HOH . D 4 HOH A 40 232 232 HOH HOH . D 4 HOH A 41 233 233 HOH HOH . D 4 HOH A 42 234 234 HOH HOH . D 4 HOH A 43 235 235 HOH HOH . D 4 HOH A 44 236 236 HOH HOH . D 4 HOH A 45 237 237 HOH HOH . D 4 HOH A 46 238 238 HOH HOH . D 4 HOH A 47 239 239 HOH HOH . D 4 HOH A 48 240 240 HOH HOH . D 4 HOH A 49 241 241 HOH HOH . D 4 HOH A 50 242 242 HOH HOH . D 4 HOH A 51 243 243 HOH HOH . D 4 HOH A 52 244 244 HOH HOH . D 4 HOH A 53 245 245 HOH HOH . D 4 HOH A 54 246 246 HOH HOH . D 4 HOH A 55 247 247 HOH HOH . D 4 HOH A 56 248 248 HOH HOH . D 4 HOH A 57 249 249 HOH HOH . D 4 HOH A 58 250 250 HOH HOH . D 4 HOH A 59 251 251 HOH HOH . D 4 HOH A 60 252 252 HOH HOH . D 4 HOH A 61 253 253 HOH HOH . D 4 HOH A 62 254 254 HOH HOH . D 4 HOH A 63 255 255 HOH HOH . D 4 HOH A 64 256 256 HOH HOH . D 4 HOH A 65 257 1 HOH HOH . D 4 HOH A 66 258 2 HOH HOH . D 4 HOH A 67 259 3 HOH HOH . D 4 HOH A 68 260 4 HOH HOH . D 4 HOH A 69 261 5 HOH HOH . D 4 HOH A 70 262 6 HOH HOH . D 4 HOH A 71 263 7 HOH HOH . D 4 HOH A 72 264 8 HOH HOH . D 4 HOH A 73 265 9 HOH HOH . D 4 HOH A 74 266 10 HOH HOH . D 4 HOH A 75 267 11 HOH HOH . D 4 HOH A 76 268 12 HOH HOH . D 4 HOH A 77 269 13 HOH HOH . D 4 HOH A 78 270 14 HOH HOH . D 4 HOH A 79 271 15 HOH HOH . D 4 HOH A 80 272 16 HOH HOH . D 4 HOH A 81 273 17 HOH HOH . D 4 HOH A 82 274 18 HOH HOH . D 4 HOH A 83 275 19 HOH HOH . D 4 HOH A 84 276 20 HOH HOH . D 4 HOH A 85 277 21 HOH HOH . D 4 HOH A 86 278 22 HOH HOH . D 4 HOH A 87 279 23 HOH HOH . D 4 HOH A 88 280 24 HOH HOH . D 4 HOH A 89 281 25 HOH HOH . D 4 HOH A 90 282 26 HOH HOH . D 4 HOH A 91 283 27 HOH HOH . D 4 HOH A 92 284 28 HOH HOH . D 4 HOH A 93 285 29 HOH HOH . D 4 HOH A 94 286 30 HOH HOH . D 4 HOH A 95 287 31 HOH HOH . D 4 HOH A 96 288 32 HOH HOH . D 4 HOH A 97 289 33 HOH HOH . D 4 HOH A 98 290 34 HOH HOH . D 4 HOH A 99 291 35 HOH HOH . D 4 HOH A 100 292 36 HOH HOH . D 4 HOH A 101 293 37 HOH HOH . D 4 HOH A 102 294 38 HOH HOH . D 4 HOH A 103 295 39 HOH HOH . D 4 HOH A 104 296 40 HOH HOH . D 4 HOH A 105 297 41 HOH HOH . D 4 HOH A 106 298 42 HOH HOH . D 4 HOH A 107 299 43 HOH HOH . D 4 HOH A 108 300 44 HOH HOH . D 4 HOH A 109 301 45 HOH HOH . D 4 HOH A 110 302 46 HOH HOH . D 4 HOH A 111 303 47 HOH HOH . D 4 HOH A 112 304 48 HOH HOH . D 4 HOH A 113 305 49 HOH HOH . D 4 HOH A 114 306 50 HOH HOH . D 4 HOH A 115 307 51 HOH HOH . D 4 HOH A 116 308 52 HOH HOH . D 4 HOH A 117 309 53 HOH HOH . D 4 HOH A 118 310 54 HOH HOH . D 4 HOH A 119 311 55 HOH HOH . D 4 HOH A 120 312 56 HOH HOH . D 4 HOH A 121 313 57 HOH HOH . D 4 HOH A 122 314 58 HOH HOH . D 4 HOH A 123 315 59 HOH HOH . D 4 HOH A 124 316 60 HOH HOH . D 4 HOH A 125 317 61 HOH HOH . D 4 HOH A 126 318 62 HOH HOH . D 4 HOH A 127 319 63 HOH HOH . D 4 HOH A 128 320 64 HOH HOH . D 4 HOH A 129 321 65 HOH HOH . D 4 HOH A 130 322 66 HOH HOH . D 4 HOH A 131 323 67 HOH HOH . D 4 HOH A 132 324 68 HOH HOH . D 4 HOH A 133 325 69 HOH HOH . D 4 HOH A 134 326 70 HOH HOH . D 4 HOH A 135 327 71 HOH HOH . D 4 HOH A 136 328 72 HOH HOH . D 4 HOH A 137 329 73 HOH HOH . D 4 HOH A 138 330 74 HOH HOH . D 4 HOH A 139 331 75 HOH HOH . D 4 HOH A 140 332 76 HOH HOH . D 4 HOH A 141 333 77 HOH HOH . D 4 HOH A 142 334 78 HOH HOH . D 4 HOH A 143 335 79 HOH HOH . D 4 HOH A 144 336 80 HOH HOH . D 4 HOH A 145 337 81 HOH HOH . D 4 HOH A 146 338 82 HOH HOH . D 4 HOH A 147 339 83 HOH HOH . D 4 HOH A 148 340 84 HOH HOH . D 4 HOH A 149 341 85 HOH HOH . D 4 HOH A 150 342 86 HOH HOH . D 4 HOH A 151 343 87 HOH HOH . D 4 HOH A 152 344 88 HOH HOH . D 4 HOH A 153 345 89 HOH HOH . D 4 HOH A 154 346 90 HOH HOH . D 4 HOH A 155 347 91 HOH HOH . D 4 HOH A 156 348 92 HOH HOH . D 4 HOH A 157 349 93 HOH HOH . D 4 HOH A 158 350 94 HOH HOH . D 4 HOH A 159 351 95 HOH HOH . D 4 HOH A 160 352 96 HOH HOH . D 4 HOH A 161 353 97 HOH HOH . D 4 HOH A 162 354 98 HOH HOH . D 4 HOH A 163 355 99 HOH HOH . D 4 HOH A 164 356 100 HOH HOH . D 4 HOH A 165 357 101 HOH HOH . D 4 HOH A 166 358 102 HOH HOH . D 4 HOH A 167 359 103 HOH HOH . D 4 HOH A 168 360 104 HOH HOH . D 4 HOH A 169 361 105 HOH HOH . D 4 HOH A 170 362 106 HOH HOH . D 4 HOH A 171 363 107 HOH HOH . D 4 HOH A 172 364 108 HOH HOH . D 4 HOH A 173 365 109 HOH HOH . D 4 HOH A 174 366 110 HOH HOH . D 4 HOH A 175 367 111 HOH HOH . D 4 HOH A 176 368 112 HOH HOH . D 4 HOH A 177 369 113 HOH HOH . D 4 HOH A 178 370 114 HOH HOH . D 4 HOH A 179 371 115 HOH HOH . D 4 HOH A 180 372 116 HOH HOH . D 4 HOH A 181 373 117 HOH HOH . D 4 HOH A 182 374 118 HOH HOH . D 4 HOH A 183 375 119 HOH HOH . D 4 HOH A 184 376 120 HOH HOH . D 4 HOH A 185 377 121 HOH HOH . D 4 HOH A 186 378 122 HOH HOH . D 4 HOH A 187 379 123 HOH HOH . D 4 HOH A 188 380 124 HOH HOH . D 4 HOH A 189 381 125 HOH HOH . D 4 HOH A 190 382 126 HOH HOH . D 4 HOH A 191 383 127 HOH HOH . D 4 HOH A 192 384 128 HOH HOH . D 4 HOH A 193 385 129 HOH HOH . D 4 HOH A 194 386 130 HOH HOH . D 4 HOH A 195 387 131 HOH HOH . D 4 HOH A 196 388 132 HOH HOH . D 4 HOH A 197 389 133 HOH HOH . D 4 HOH A 198 390 134 HOH HOH . D 4 HOH A 199 391 135 HOH HOH . D 4 HOH A 200 392 136 HOH HOH . D 4 HOH A 201 393 137 HOH HOH . D 4 HOH A 202 394 138 HOH HOH . D 4 HOH A 203 395 139 HOH HOH . D 4 HOH A 204 396 140 HOH HOH . D 4 HOH A 205 397 141 HOH HOH . D 4 HOH A 206 398 142 HOH HOH . D 4 HOH A 207 399 143 HOH HOH . D 4 HOH A 208 400 144 HOH HOH . D 4 HOH A 209 401 145 HOH HOH . D 4 HOH A 210 402 146 HOH HOH . D 4 HOH A 211 403 147 HOH HOH . D 4 HOH A 212 404 148 HOH HOH . D 4 HOH A 213 405 149 HOH HOH . D 4 HOH A 214 406 150 HOH HOH . D 4 HOH A 215 407 151 HOH HOH . D 4 HOH A 216 408 152 HOH HOH . D 4 HOH A 217 409 153 HOH HOH . D 4 HOH A 218 410 154 HOH HOH . D 4 HOH A 219 411 155 HOH HOH . D 4 HOH A 220 412 156 HOH HOH . D 4 HOH A 221 413 157 HOH HOH . D 4 HOH A 222 414 158 HOH HOH . D 4 HOH A 223 415 159 HOH HOH . D 4 HOH A 224 416 160 HOH HOH . D 4 HOH A 225 417 161 HOH HOH . D 4 HOH A 226 418 162 HOH HOH . D 4 HOH A 227 419 163 HOH HOH . D 4 HOH A 228 420 164 HOH HOH . D 4 HOH A 229 421 165 HOH HOH . D 4 HOH A 230 422 166 HOH HOH . D 4 HOH A 231 423 167 HOH HOH . D 4 HOH A 232 424 168 HOH HOH . D 4 HOH A 233 425 169 HOH HOH . D 4 HOH A 234 426 170 HOH HOH . D 4 HOH A 235 427 171 HOH HOH . D 4 HOH A 236 428 172 HOH HOH . D 4 HOH A 237 429 173 HOH HOH . D 4 HOH A 238 430 174 HOH HOH . D 4 HOH A 239 431 175 HOH HOH . D 4 HOH A 240 432 176 HOH HOH . D 4 HOH A 241 433 177 HOH HOH . D 4 HOH A 242 434 178 HOH HOH . D 4 HOH A 243 435 179 HOH HOH . D 4 HOH A 244 436 180 HOH HOH . D 4 HOH A 245 437 181 HOH HOH . D 4 HOH A 246 438 182 HOH HOH . D 4 HOH A 247 439 183 HOH HOH . D 4 HOH A 248 440 184 HOH HOH . D 4 HOH A 249 441 185 HOH HOH . D 4 HOH A 250 442 186 HOH HOH . D 4 HOH A 251 443 187 HOH HOH . D 4 HOH A 252 444 188 HOH HOH . D 4 HOH A 253 445 189 HOH HOH . D 4 HOH A 254 446 190 HOH HOH . D 4 HOH A 255 447 191 HOH HOH . D 4 HOH A 256 448 192 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -13.22 7.317 0.895 1 15.14 ? C1 GOL 191 A 1 HETATM 2 O O1 GOL . . . B 2 -12.085 7.821 1.572 1 14.38 ? O1 GOL 191 A 1 HETATM 3 C C2 GOL . . . B 2 -12.857 6.843 -0.512 1 15.2 ? C2 GOL 191 A 1 HETATM 4 O O2 GOL . . . B 2 -12.382 7.967 -1.267 1 16.69 ? O2 GOL 191 A 1 HETATM 5 C C3 GOL . . . B 2 -14.081 6.254 -1.216 1 15.25 ? C3 GOL 191 A 1 HETATM 6 O O3 GOL . . . B 2 -15.225 7.062 -1.029 1 15.52 ? O3 GOL 191 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 6 #