data_3AL1 # _model_server_result.job_id oY5WCKc0yrVuzQypCqSccw _model_server_result.datetime_utc '2024-11-13 16:07:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3al1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":400}' # _entry.id 3AL1 # _exptl.entry_id 3AL1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 101.16 _cell.angle_beta 97.03 _cell.angle_gamma 118.06 _cell.entry_id 3AL1 _cell.length_a 20.544 _cell.length_b 20.859 _cell.length_c 26.055 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AL1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 2 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P -1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 100 1_555 A N GLU 2 A GLU 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 B C ACE 1 B ACE 200 1_555 B N GLU 2 B GLU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 91 n n C1 H11 MPD sing 92 n n C1 H12 MPD sing 93 n n C1 H13 MPD sing 94 n n C2 O2 MPD sing 95 n n C2 CM MPD sing 96 n n C2 C3 MPD sing 97 n n O2 HO2 MPD sing 98 n n CM HM1 MPD sing 99 n n CM HM2 MPD sing 100 n n CM HM3 MPD sing 101 n n C3 C4 MPD sing 102 n n C3 H31 MPD sing 103 n n C3 H32 MPD sing 104 n n C4 O4 MPD sing 105 n n C4 C5 MPD sing 106 n n C4 H4 MPD sing 107 n n O4 HO4 MPD sing 108 n n C5 H51 MPD sing 109 n n C5 H52 MPD sing 110 n n C5 H53 MPD sing 111 n n # _atom_sites.entry_id 3AL1 _atom_sites.fract_transf_matrix[1][1] 0.048676 _atom_sites.fract_transf_matrix[1][2] 0.025947 _atom_sites.fract_transf_matrix[1][3] 0.014031 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.054327 _atom_sites.fract_transf_matrix[2][3] 0.016259 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.040366 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPD A 1 400 400 MPD MPD . D 3 ETA B 1 501 501 ETA ETA . E 3 ETA B 1 506 506 ETA ETA . F 4 HOH A 1 303 303 HOH HOH . F 4 HOH A 2 305 305 HOH HOH . F 4 HOH A 3 307 307 HOH HOH . F 4 HOH A 4 308 308 HOH HOH . F 4 HOH A 5 310 310 HOH HOH . F 4 HOH A 6 311 311 HOH HOH . F 4 HOH A 7 313 313 HOH HOH . F 4 HOH A 8 323 323 HOH HOH . G 4 HOH B 1 301 301 HOH HOH . G 4 HOH B 2 302 302 HOH HOH . G 4 HOH B 3 304 304 HOH HOH . G 4 HOH B 4 306 306 HOH HOH . G 4 HOH B 5 309 309 HOH HOH . G 4 HOH B 6 312 312 HOH HOH . G 4 HOH B 7 316 316 HOH HOH . G 4 HOH B 8 318 318 HOH HOH . G 4 HOH B 9 322 322 HOH HOH . G 4 HOH B 10 324 324 HOH HOH . G 4 HOH B 11 325 325 HOH HOH . G 4 HOH B 12 327 327 HOH HOH . G 4 HOH B 13 329 329 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . A . C 2 -18.969 1.362 -9.872 0.67 7.57 ? C1 MPD 400 A 1 HETATM 2 C C1 MPD . B . C 2 -19.529 0.016 -13.586 0.33 13.5 ? C1 MPD 400 A 1 HETATM 3 C C2 MPD . A . C 2 -20.379 1.518 -10.396 0.67 5.91 ? C2 MPD 400 A 1 HETATM 4 C C2 MPD . B . C 2 -20.283 1.346 -13.154 0.33 10 ? C2 MPD 400 A 1 HETATM 5 O O2 MPD . A . C 2 -20.933 0.192 -10.457 0.67 8.42 ? O2 MPD 400 A 1 HETATM 6 O O2 MPD . B . C 2 -21.595 0.905 -13.188 0.33 12.42 ? O2 MPD 400 A 1 HETATM 7 C CM MPD . A . C 2 -21.205 2.39 -9.518 0.67 6.78 ? CM MPD 400 A 1 HETATM 8 C CM MPD . B . C 2 -20.021 2.369 -14.23 0.33 17.42 ? CM MPD 400 A 1 HETATM 9 C C3 MPD . A . C 2 -20.426 2.081 -11.823 0.67 5.17 ? C3 MPD 400 A 1 HETATM 10 C C3 MPD . B . C 2 -19.713 1.791 -11.83 0.33 8.45 ? C3 MPD 400 A 1 HETATM 11 C C4 MPD . A . C 2 -19.937 1.135 -12.911 0.67 5.5 ? C4 MPD 400 A 1 HETATM 12 C C4 MPD . B . C 2 -20.077 1.005 -10.616 0.33 8.63 ? C4 MPD 400 A 1 HETATM 13 O O4 MPD . A . C 2 -20.852 0.084 -13.103 0.67 6.3 ? O4 MPD 400 A 1 HETATM 14 O O4 MPD . B . C 2 -21.332 0.485 -10.55 0.33 11.44 ? O4 MPD 400 A 1 HETATM 15 C C5 MPD . A . C 2 -19.816 1.868 -14.237 0.67 5.54 ? C5 MPD 400 A 1 HETATM 16 C C5 MPD . B . C 2 -19.645 1.718 -9.353 0.33 13.52 ? C5 MPD 400 A 1 HETATM 17 H H11 MPD . A . C 2 -18.458 0.784 -10.476 0.67 11.35 ? H11 MPD 400 A 1 HETATM 18 H H11 MPD . B . C 2 -19.706 -0.689 -12.928 0.33 20.26 ? H11 MPD 400 A 1 HETATM 19 H H12 MPD . A . C 2 -18.995 0.96 -8.979 0.67 11.35 ? H12 MPD 400 A 1 HETATM 20 H H12 MPD . B . C 2 -18.565 0.186 -13.63 0.33 20.26 ? H12 MPD 400 A 1 HETATM 21 H H13 MPD . A . C 2 -18.54 2.242 -9.822 0.67 11.35 ? H13 MPD 400 A 1 HETATM 22 H H13 MPD . B . C 2 -19.851 -0.271 -14.466 0.33 20.26 ? H13 MPD 400 A 1 HETATM 23 H HO2 MPD . A . C 2 -20.961 -0.136 -9.684 0.67 12.64 ? HO2 MPD 400 A 1 HETATM 24 H HO2 MPD . B . C 2 -21.759 0.572 -13.941 0.33 18.64 ? HO2 MPD 400 A 1 HETATM 25 H HM1 MPD . A . C 2 -22.106 2.473 -9.893 0.67 10.17 ? HM1 MPD 400 A 1 HETATM 26 H HM1 MPD . B . C 2 -20.379 2.045 -15.083 0.33 26.13 ? HM1 MPD 400 A 1 HETATM 27 H HM2 MPD . A . C 2 -20.793 3.278 -9.459 0.67 10.17 ? HM2 MPD 400 A 1 HETATM 28 H HM2 MPD . B . C 2 -19.055 2.514 -14.316 0.33 26.13 ? HM2 MPD 400 A 1 HETATM 29 H HM3 MPD . A . C 2 -21.259 1.996 -8.623 0.67 10.17 ? HM3 MPD 400 A 1 HETATM 30 H HM3 MPD . B . C 2 -20.458 3.213 -13.992 0.33 26.13 ? HM3 MPD 400 A 1 HETATM 31 H H31 MPD . A . C 2 -21.359 2.339 -12.028 0.67 6.21 ? H31 MPD 400 A 1 HETATM 32 H H31 MPD . B . C 2 -18.726 1.789 -11.909 0.33 10.14 ? H31 MPD 400 A 1 HETATM 33 H H32 MPD . A . C 2 -19.877 2.904 -11.853 0.67 6.21 ? H32 MPD 400 A 1 HETATM 34 H H32 MPD . B . C 2 -19.992 2.729 -11.68 0.33 10.14 ? H32 MPD 400 A 1 HETATM 35 H H4 MPD . A . C 2 -19.046 0.761 -12.653 0.67 6.6 ? H4 MPD 400 A 1 HETATM 36 H H4 MPD . B . C 2 -19.482 0.202 -10.658 0.33 10.36 ? H4 MPD 400 A 1 HETATM 37 H HO4 MPD . A . C 2 -21.119 0.087 -13.899 0.67 9.45 ? HO4 MPD 400 A 1 HETATM 38 H HO4 MPD . B . C 2 -21.433 0.09 -9.816 0.33 17.16 ? HO4 MPD 400 A 1 HETATM 39 H H51 MPD . A . C 2 -19.515 1.244 -14.929 0.67 8.3 ? H51 MPD 400 A 1 HETATM 40 H H51 MPD . B . C 2 -19.9 1.183 -8.572 0.33 20.28 ? H51 MPD 400 A 1 HETATM 41 H H52 MPD . A . C 2 -19.167 2.597 -14.149 0.67 8.3 ? H52 MPD 400 A 1 HETATM 42 H H52 MPD . B . C 2 -20.083 2.593 -9.306 0.33 20.28 ? H52 MPD 400 A 1 HETATM 43 H H53 MPD . A . C 2 -20.69 2.236 -14.487 0.67 8.3 ? H53 MPD 400 A 1 HETATM 44 H H53 MPD . B . C 2 -18.673 1.839 -9.362 0.33 20.28 ? H53 MPD 400 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #