data_3ALN # _model_server_result.job_id k5eD-vU-6msqJPyp37sJOw _model_server_result.datetime_utc '2024-12-21 13:17:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3aln # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 3ALN # _exptl.entry_id 3ALN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ALN _cell.length_a 66.508 _cell.length_b 76.123 _cell.length_c 173.126 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ALN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E 1 1 B,F,G 2 1 C,H 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O2B ANP . A ANP 1 1_555 E MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? metalc ? metalc2 D O1A ANP . A ANP 1 1_555 E MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? metalc ? metalc3 D O2G ANP . A ANP 1 1_555 E MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc4 D O3A ANP . A ANP 1 1_555 E MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc5 A OD1 ASN 156 A ASN 234 1_555 E MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc6 F O2G ANP . B ANP 1 1_555 G MG MG . B MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? metalc ? metalc7 F O1A ANP . B ANP 1 1_555 G MG MG . B MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc8 F O2B ANP . B ANP 1 1_555 G MG MG . B MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc9 B OD1 ASN 156 B ASN 234 1_555 G MG MG . B MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? metalc ? metalc10 B OD2 ASP 169 B ASP 247 1_555 G MG MG . B MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 3ALN _atom_sites.fract_transf_matrix[1][1] 0.015036 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013137 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005776 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ANP A 1 1 1 ANP ANP . E 3 MG A 1 406 1 MG MG . F 2 ANP B 1 1 1 ANP ANP . G 3 MG B 1 406 1 MG MG . H 2 ANP C 1 1 1 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . D 2 13.162 -4.569 -22.547 1 45.71 ? PG ANP 1 A 1 HETATM 2 O O1G ANP . . . D 2 14.088 -5.027 -21.441 1 33.28 ? O1G ANP 1 A 1 HETATM 3 O O2G ANP . . . D 2 13.672 -4.923 -23.947 1 34.67 ? O2G ANP 1 A 1 HETATM 4 O O3G ANP . . . D 2 11.705 -4.878 -22.269 1 37.58 ? O3G ANP 1 A 1 HETATM 5 P PB ANP . . . D 2 13.678 -1.696 -23.496 1 46.05 ? PB ANP 1 A 1 HETATM 6 O O1B ANP . . . D 2 12.6 -0.649 -23.546 1 49.97 ? O1B ANP 1 A 1 HETATM 7 O O2B ANP . . . D 2 14.078 -2.338 -24.809 1 52.66 ? O2B ANP 1 A 1 HETATM 8 N N3B ANP . . . D 2 13.138 -2.845 -22.329 1 44.38 ? N3B ANP 1 A 1 HETATM 9 P PA ANP . . . D 2 16.371 -1.817 -22.518 1 50.19 ? PA ANP 1 A 1 HETATM 10 O O1A ANP . . . D 2 16.732 -2.746 -23.642 1 43.31 ? O1A ANP 1 A 1 HETATM 11 O O2A ANP . . . D 2 16.208 -2.379 -21.118 1 52.65 ? O2A ANP 1 A 1 HETATM 12 O O3A ANP . . . D 2 15.004 -1.031 -22.894 1 50.26 ? O3A ANP 1 A 1 HETATM 13 O O5' ANP . . . D 2 17.319 -0.512 -22.369 1 58.12 ? O5' ANP 1 A 1 HETATM 14 C C5' ANP . . . D 2 18.223 0.022 -23.343 1 57.47 ? C5' ANP 1 A 1 HETATM 15 C C4' ANP . . . D 2 17.524 0.623 -24.544 1 58.55 ? C4' ANP 1 A 1 HETATM 16 O O4' ANP . . . D 2 17.814 -0.252 -25.606 1 61.51 ? O4' ANP 1 A 1 HETATM 17 C C3' ANP . . . D 2 18.117 1.939 -24.991 1 57.96 ? C3' ANP 1 A 1 HETATM 18 O O3' ANP . . . D 2 17.032 2.685 -25.551 1 72.09 ? O3' ANP 1 A 1 HETATM 19 C C2' ANP . . . D 2 19.121 1.62 -26.087 1 52.74 ? C2' ANP 1 A 1 HETATM 20 O O2' ANP . . . D 2 19.096 2.564 -27.164 1 68.13 ? O2' ANP 1 A 1 HETATM 21 C C1' ANP . . . D 2 18.559 0.374 -26.669 1 43.87 ? C1' ANP 1 A 1 HETATM 22 N N9 ANP . . . D 2 19.515 -0.551 -27.34 1 33.62 ? N9 ANP 1 A 1 HETATM 23 C C8 ANP . . . D 2 19.541 -1.874 -27.035 1 27.94 ? C8 ANP 1 A 1 HETATM 24 N N7 ANP . . . D 2 20.455 -2.497 -27.803 1 31.32 ? N7 ANP 1 A 1 HETATM 25 C C5 ANP . . . D 2 21.05 -1.587 -28.608 1 26.51 ? C5 ANP 1 A 1 HETATM 26 C C6 ANP . . . D 2 22.085 -1.653 -29.648 1 32.49 ? C6 ANP 1 A 1 HETATM 27 N N6 ANP . . . D 2 22.649 -2.86 -29.868 1 41.06 ? N6 ANP 1 A 1 HETATM 28 N N1 ANP . . . D 2 22.463 -0.517 -30.31 1 36.31 ? N1 ANP 1 A 1 HETATM 29 C C2 ANP . . . D 2 21.862 0.659 -29.976 1 33.25 ? C2 ANP 1 A 1 HETATM 30 N N3 ANP . . . D 2 20.894 0.761 -29.025 1 28.31 ? N3 ANP 1 A 1 HETATM 31 C C4 ANP . . . D 2 20.431 -0.301 -28.319 1 28.54 ? C4 ANP 1 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #