data_3ALO # _model_server_result.job_id g7hb1zbagSHvC23y31hniw _model_server_result.datetime_utc '2024-12-27 01:57:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3alo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":406}' # _entry.id 3ALO # _exptl.entry_id 3ALO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ALO _cell.length_a 68.776 _cell.length_b 117.985 _cell.length_c 81.793 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ALO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1,2 A,B,C,D,E 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -68.776 0 40.8965 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C MET 4 E MET 6 1_555 B N TPO 5 E TPO 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 B C TPO 5 E TPO 7 1_555 B N GLY 6 E GLY 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 C MG MG . A MG 1 1_555 A OD1 ASN 156 A ASN 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc2 C MG MG . A MG 1 1_555 A OD2 ASP 169 A ASP 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc3 C MG MG . A MG 1 1_555 D O1A ANP . A ANP 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? metalc ? metalc4 C MG MG . A MG 1 1_555 D O2B ANP . A ANP 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc5 C MG MG . A MG 1 1_555 D O3G ANP . A ANP 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 3ALO _atom_sites.fract_transf_matrix[1][1] 0.01454 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008476 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 1 1 MG MG . D 4 ANP A 1 406 1 ANP ANP . E 5 HOH A 1 2 2 HOH HOH . E 5 HOH A 2 3 3 HOH HOH . E 5 HOH A 3 4 4 HOH HOH . E 5 HOH A 4 5 5 HOH HOH . E 5 HOH A 5 6 6 HOH HOH . E 5 HOH A 6 7 7 HOH HOH . E 5 HOH A 7 8 8 HOH HOH . E 5 HOH A 8 9 9 HOH HOH . E 5 HOH A 9 10 10 HOH HOH . E 5 HOH A 10 11 11 HOH HOH . E 5 HOH A 11 12 12 HOH HOH . E 5 HOH A 12 15 15 HOH HOH . E 5 HOH A 13 17 17 HOH HOH . E 5 HOH A 14 18 18 HOH HOH . E 5 HOH A 15 21 21 HOH HOH . E 5 HOH A 16 22 22 HOH HOH . E 5 HOH A 17 24 24 HOH HOH . E 5 HOH A 18 27 27 HOH HOH . E 5 HOH A 19 35 35 HOH HOH . E 5 HOH A 20 36 36 HOH HOH . E 5 HOH A 21 37 37 HOH HOH . E 5 HOH A 22 41 41 HOH HOH . E 5 HOH A 23 42 42 HOH HOH . E 5 HOH A 24 51 51 HOH HOH . E 5 HOH A 25 54 54 HOH HOH . E 5 HOH A 26 55 55 HOH HOH . E 5 HOH A 27 407 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . D 4 -24.508 -17.53 14.169 1 33.01 ? PG ANP 406 A 1 HETATM 2 O O1G ANP . . . D 4 -24.527 -19.029 14.387 1 32.56 ? O1G ANP 406 A 1 HETATM 3 O O2G ANP . . . D 4 -25.309 -16.767 15.206 1 30.78 ? O2G ANP 406 A 1 HETATM 4 O O3G ANP . . . D 4 -23.109 -16.964 13.925 1 28.61 ? O3G ANP 406 A 1 HETATM 5 P PB ANP . . . D 4 -25.164 -16.341 11.467 1 33.4 ? PB ANP 406 A 1 HETATM 6 O O1B ANP . . . D 4 -25.889 -16.754 10.192 1 32.48 ? O1B ANP 406 A 1 HETATM 7 O O2B ANP . . . D 4 -23.648 -16.353 11.393 1 27.5 ? O2B ANP 406 A 1 HETATM 8 N N3B ANP . . . D 4 -25.516 -17.443 12.74 1 28.82 ? N3B ANP 406 A 1 HETATM 9 P PA ANP . . . D 4 -24.925 -13.636 12.545 1 29.49 ? PA ANP 406 A 1 HETATM 10 O O1A ANP . . . D 4 -23.587 -14.128 13.019 1 36.1 ? O1A ANP 406 A 1 HETATM 11 O O2A ANP . . . D 4 -25.716 -12.852 13.534 1 31.2 ? O2A ANP 406 A 1 HETATM 12 O O3A ANP . . . D 4 -25.774 -14.925 12.011 1 34.17 ? O3A ANP 406 A 1 HETATM 13 O O5' ANP . . . D 4 -24.747 -12.807 11.19 1 37.04 ? O5' ANP 406 A 1 HETATM 14 C C5' ANP . . . D 4 -23.673 -13.306 10.361 1 57.09 ? C5' ANP 406 A 1 HETATM 15 C C4' ANP . . . D 4 -23.704 -12.918 8.881 1 48.64 ? C4' ANP 406 A 1 HETATM 16 O O4' ANP . . . D 4 -22.492 -12.258 8.517 1 45.21 ? O4' ANP 406 A 1 HETATM 17 C C3' ANP . . . D 4 -24.747 -11.862 8.745 1 49.81 ? C3' ANP 406 A 1 HETATM 18 O O3' ANP . . . D 4 -25.052 -11.798 7.342 1 61.98 ? O3' ANP 406 A 1 HETATM 19 C C2' ANP . . . D 4 -24.016 -10.647 9.262 1 41.23 ? C2' ANP 406 A 1 HETATM 20 O O2' ANP . . . D 4 -24.535 -9.59 8.475 1 58.17 ? O2' ANP 406 A 1 HETATM 21 C C1' ANP . . . D 4 -22.555 -10.868 8.895 1 37.24 ? C1' ANP 406 A 1 HETATM 22 N N9 ANP . . . D 4 -21.505 -10.539 9.922 1 30.06 ? N9 ANP 406 A 1 HETATM 23 C C8 ANP . . . D 4 -21.405 -11.06 11.161 1 28.86 ? C8 ANP 406 A 1 HETATM 24 N N7 ANP . . . D 4 -20.328 -10.584 11.821 1 23.64 ? N7 ANP 406 A 1 HETATM 25 C C5 ANP . . . D 4 -19.677 -9.75 11.014 1 23.49 ? C5 ANP 406 A 1 HETATM 26 C C6 ANP . . . D 4 -18.45 -8.913 11.108 1 23.31 ? C6 ANP 406 A 1 HETATM 27 N N6 ANP . . . D 4 -17.665 -8.856 12.208 1 21.65 ? N6 ANP 406 A 1 HETATM 28 N N1 ANP . . . D 4 -18.122 -8.171 10.039 1 27.39 ? N1 ANP 406 A 1 HETATM 29 C C2 ANP . . . D 4 -18.865 -8.193 8.914 1 28.12 ? C2 ANP 406 A 1 HETATM 30 N N3 ANP . . . D 4 -19.99 -8.935 8.767 1 31.71 ? N3 ANP 406 A 1 HETATM 31 C C4 ANP . . . D 4 -20.451 -9.731 9.766 1 26.73 ? C4 ANP 406 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #