data_3ALP # _model_server_result.job_id -_0WzZbBmUE-YQCxrnywug _model_server_result.datetime_utc '2024-12-21 00:41:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3alp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2}' # _entry.id 3ALP # _exptl.entry_id 3ALP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ALP _cell.length_a 164.924 _cell.length_b 164.924 _cell.length_c 164.924 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ALP _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 36 A CYS 51 1_555 A SG CYS 109 A CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf2 A SG CYS 157 A CYS 172 1_555 A SG CYS 211 A CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 254 A CYS 269 1_555 A SG CYS 301 A CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 B SG CYS 36 B CYS 51 1_555 B SG CYS 109 B CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf5 B SG CYS 157 B CYS 172 1_555 B SG CYS 211 B CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf6 B SG CYS 254 B CYS 269 1_555 B SG CYS 301 B CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 3ALP _atom_sites.fract_transf_matrix[1][1] 0.006063 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006063 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006063 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CIT A 1 1 1 CIT CIT . D 3 HEZ B 1 1 1 HEZ HEZ . E 2 CIT B 1 2 2 CIT CIT . F 4 HOH A 1 2 2 HOH HOH . F 4 HOH A 2 3 3 HOH HOH . F 4 HOH A 3 4 4 HOH HOH . F 4 HOH A 4 6 6 HOH HOH . F 4 HOH A 5 8 8 HOH HOH . F 4 HOH A 6 12 12 HOH HOH . F 4 HOH A 7 13 13 HOH HOH . F 4 HOH A 8 347 1 HOH HOH . F 4 HOH A 9 348 16 HOH HOH . F 4 HOH A 10 349 26 HOH HOH . F 4 HOH A 11 350 27 HOH HOH . F 4 HOH A 12 351 28 HOH HOH . F 4 HOH A 13 352 32 HOH HOH . F 4 HOH A 14 353 34 HOH HOH . F 4 HOH A 15 354 37 HOH HOH . G 4 HOH B 1 5 5 HOH HOH . G 4 HOH B 2 7 7 HOH HOH . G 4 HOH B 3 9 9 HOH HOH . G 4 HOH B 4 10 10 HOH HOH . G 4 HOH B 5 11 11 HOH HOH . G 4 HOH B 6 14 14 HOH HOH . G 4 HOH B 7 15 15 HOH HOH . G 4 HOH B 8 347 17 HOH HOH . G 4 HOH B 9 348 18 HOH HOH . G 4 HOH B 10 349 19 HOH HOH . G 4 HOH B 11 350 20 HOH HOH . G 4 HOH B 12 351 21 HOH HOH . G 4 HOH B 13 352 22 HOH HOH . G 4 HOH B 14 353 23 HOH HOH . G 4 HOH B 15 354 24 HOH HOH . G 4 HOH B 16 355 25 HOH HOH . G 4 HOH B 17 356 29 HOH HOH . G 4 HOH B 18 357 30 HOH HOH . G 4 HOH B 19 358 31 HOH HOH . G 4 HOH B 20 359 33 HOH HOH . G 4 HOH B 21 360 35 HOH HOH . G 4 HOH B 22 361 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . E 2 24.44 14.878 -17.097 1 97.69 ? C1 CIT 2 B 1 HETATM 2 O O1 CIT . . . E 2 24.451 15.931 -16.413 1 88.52 ? O1 CIT 2 B 1 HETATM 3 O O2 CIT . . . E 2 24.89 14.886 -18.261 1 97.22 ? O2 CIT 2 B 1 HETATM 4 C C2 CIT . . . E 2 23.901 13.579 -16.556 1 104.39 ? C2 CIT 2 B 1 HETATM 5 C C3 CIT . . . E 2 22.404 13.654 -16.276 1 113.3 ? C3 CIT 2 B 1 HETATM 6 O O7 CIT . . . E 2 22.188 13.803 -14.846 1 107.1 ? O7 CIT 2 B 1 HETATM 7 C C4 CIT . . . E 2 21.802 12.342 -16.772 1 106.75 ? C4 CIT 2 B 1 HETATM 8 C C5 CIT . . . E 2 22.722 11.217 -16.368 1 100.64 ? C5 CIT 2 B 1 HETATM 9 O O3 CIT . . . E 2 23.026 11.092 -15.169 1 100.48 ? O3 CIT 2 B 1 HETATM 10 O O4 CIT . . . E 2 23.205 10.418 -17.205 1 96.68 ? O4 CIT 2 B 1 HETATM 11 C C6 CIT . . . E 2 21.746 14.823 -17.012 1 128.18 ? C6 CIT 2 B 1 HETATM 12 O O5 CIT . . . E 2 21.765 14.894 -18.267 1 131.16 ? O5 CIT 2 B 1 HETATM 13 O O6 CIT . . . E 2 21.175 15.734 -16.357 1 127.97 ? O6 CIT 2 B 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #