data_3ALT # _model_server_result.job_id pcW9ct3Cl0kKbQ_l_URszw _model_server_result.datetime_utc '2024-11-29 21:17:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3alt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":201}' # _entry.id 3ALT # _exptl.entry_id 3ALT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.41 _cell.angle_gamma 90 _cell.entry_id 3ALT _cell.length_a 43.988 _cell.length_b 78.504 _cell.length_c 102.898 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ALT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLA _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O6 _pdbx_entity_branch_link.leaving_atom_id_2 HO6 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E GLC 1 E 1 GLC C 301 MLB 2 n E GLA 2 E 2 GLA C 301 MLB 2 n F GLC 1 F 1 GLC D 301 MLB 2 n F GLA 2 F 2 GLA D 301 MLB 2 n G GLC 1 G 1 GLC A 301 MLB 2 n G GLA 2 G 2 GLA A 301 MLB 2 n H GLC 1 H 1 GLC B 301 MLB 2 n H GLA 2 H 2 GLA B 301 MLB # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 5 1_555 A SG CYS 16 A CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf2 A SG CYS 33 A CYS 33 1_555 A SG CYS 147 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 A SG CYS 41 A CYS 41 1_555 C SG CYS 151 C CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf4 A SG CYS 151 A CYS 151 1_555 C SG CYS 41 C CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? disulf ? disulf5 B SG CYS 5 B CYS 5 1_555 B SG CYS 16 B CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf6 B SG CYS 33 B CYS 33 1_555 B SG CYS 147 B CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf7 B SG CYS 41 B CYS 41 1_555 D SG CYS 151 D CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf8 B SG CYS 151 B CYS 151 1_555 D SG CYS 41 D CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf9 C SG CYS 5 C CYS 5 1_555 C SG CYS 16 C CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? disulf ? disulf10 C SG CYS 33 C CYS 33 1_555 C SG CYS 147 C CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf11 D SG CYS 5 D CYS 5 1_555 D SG CYS 16 D CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf12 D SG CYS 33 D CYS 33 1_555 D SG CYS 147 D CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 E O6 GLC . E GLC 1 1_555 E C1 GLA . E GLA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 sing covale ? covale2 F O6 GLC . F GLC 1 1_555 F C1 GLA . F GLA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 sing covale ? covale3 G O6 GLC . G GLC 1 1_555 G C1 GLA . G GLA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 sing covale ? covale4 H O6 GLC . H GLC 1 1_555 H C1 GLA . H GLA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 sing metalc ? metalc1 A OE2 GLU 113 A GLU 113 1_555 I CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc2 A OD1 ASN 115 A ASN 115 1_555 I CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc3 A OD1 ASN 116 A ASN 116 1_555 I CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc4 A OD1 ASP 136 A ASP 136 1_555 I CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc5 A O ASP 136 A ASP 136 1_555 I CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc6 I CA CA . A CA 201 1_555 E O4 GLA . E GLA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc7 I CA CA . A CA 201 1_555 E O3 GLA . E GLA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc8 B OE2 GLU 113 B GLU 113 1_555 J CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc9 B OD1 ASN 115 B ASN 115 1_555 J CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc10 B OD1 ASN 116 B ASN 116 1_555 J CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc11 B OD1 ASP 136 B ASP 136 1_555 J CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc12 B O ASP 136 B ASP 136 1_555 J CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc13 J CA CA . B CA 201 1_555 F O4 GLA . F GLA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc14 J CA CA . B CA 201 1_555 F O3 GLA . F GLA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc15 C OE2 GLU 113 C GLU 113 1_555 K CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc16 C OD1 ASN 115 C ASN 115 1_555 K CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc17 C OD1 ASN 116 C ASN 116 1_555 K CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc18 C OD1 ASP 136 C ASP 136 1_555 K CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc19 C O ASP 136 C ASP 136 1_555 K CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc20 K CA CA . C CA 201 1_555 G O3 GLA . G GLA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc21 K CA CA . C CA 201 1_555 G O4 GLA . G GLA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc22 D OE2 GLU 113 D GLU 113 1_555 L CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc23 D OD1 ASN 115 D ASN 115 1_555 L CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc24 D OD1 ASN 116 D ASN 116 1_555 L CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc25 D OD1 ASP 136 D ASP 136 1_555 L CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc26 D O ASP 136 D ASP 136 1_555 L CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc27 L CA CA . D CA 201 1_555 H O4 GLA . H GLA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc28 L CA CA . D CA 201 1_555 H O3 GLA . H GLA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3ALT _atom_sites.fract_transf_matrix[1][1] 0.022733 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003361 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012738 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009824 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 CA A 1 201 201 CA CA . J 3 CA B 1 201 201 CA CA . K 3 CA C 1 201 201 CA CA . L 3 CA D 1 201 201 CA CA . M 4 HOH A 1 158 1 HOH HOH . M 4 HOH A 2 159 5 HOH HOH . M 4 HOH A 3 160 6 HOH HOH . M 4 HOH A 4 161 20 HOH HOH . M 4 HOH A 5 162 23 HOH HOH . M 4 HOH A 6 163 31 HOH HOH . M 4 HOH A 7 164 37 HOH HOH . M 4 HOH A 8 165 38 HOH HOH . M 4 HOH A 9 166 40 HOH HOH . M 4 HOH A 10 167 41 HOH HOH . M 4 HOH A 11 168 47 HOH HOH . M 4 HOH A 12 169 48 HOH HOH . M 4 HOH A 13 170 50 HOH HOH . M 4 HOH A 14 171 55 HOH HOH . M 4 HOH A 15 172 58 HOH HOH . M 4 HOH A 16 173 59 HOH HOH . M 4 HOH A 17 174 60 HOH HOH . M 4 HOH A 18 175 61 HOH HOH . M 4 HOH A 19 176 69 HOH HOH . M 4 HOH A 20 177 70 HOH HOH . M 4 HOH A 21 178 76 HOH HOH . M 4 HOH A 22 179 81 HOH HOH . M 4 HOH A 23 180 88 HOH HOH . N 4 HOH B 1 158 3 HOH HOH . N 4 HOH B 2 159 8 HOH HOH . N 4 HOH B 3 160 12 HOH HOH . N 4 HOH B 4 161 15 HOH HOH . N 4 HOH B 5 162 16 HOH HOH . N 4 HOH B 6 163 18 HOH HOH . N 4 HOH B 7 164 19 HOH HOH . N 4 HOH B 8 165 21 HOH HOH . N 4 HOH B 9 166 22 HOH HOH . N 4 HOH B 10 167 27 HOH HOH . N 4 HOH B 11 168 33 HOH HOH . N 4 HOH B 12 169 39 HOH HOH . N 4 HOH B 13 170 42 HOH HOH . N 4 HOH B 14 171 43 HOH HOH . N 4 HOH B 15 172 44 HOH HOH . N 4 HOH B 16 173 45 HOH HOH . N 4 HOH B 17 174 46 HOH HOH . N 4 HOH B 18 175 66 HOH HOH . N 4 HOH B 19 176 68 HOH HOH . N 4 HOH B 20 177 77 HOH HOH . N 4 HOH B 21 178 83 HOH HOH . N 4 HOH B 22 179 85 HOH HOH . N 4 HOH B 23 180 87 HOH HOH . N 4 HOH B 24 181 89 HOH HOH . N 4 HOH B 25 182 90 HOH HOH . N 4 HOH B 26 183 91 HOH HOH . O 4 HOH C 1 158 11 HOH HOH . O 4 HOH C 2 159 13 HOH HOH . O 4 HOH C 3 160 17 HOH HOH . O 4 HOH C 4 161 24 HOH HOH . O 4 HOH C 5 162 25 HOH HOH . O 4 HOH C 6 163 30 HOH HOH . O 4 HOH C 7 164 34 HOH HOH . O 4 HOH C 8 165 36 HOH HOH . O 4 HOH C 9 166 54 HOH HOH . O 4 HOH C 10 167 64 HOH HOH . O 4 HOH C 11 168 72 HOH HOH . O 4 HOH C 12 169 74 HOH HOH . O 4 HOH C 13 170 79 HOH HOH . O 4 HOH C 14 171 82 HOH HOH . O 4 HOH C 15 172 84 HOH HOH . O 4 HOH C 16 173 92 HOH HOH . O 4 HOH C 17 174 93 HOH HOH . O 4 HOH C 18 175 94 HOH HOH . P 4 HOH D 1 158 4 HOH HOH . P 4 HOH D 2 159 7 HOH HOH . P 4 HOH D 3 160 9 HOH HOH . P 4 HOH D 4 161 10 HOH HOH . P 4 HOH D 5 162 14 HOH HOH . P 4 HOH D 6 163 26 HOH HOH . P 4 HOH D 7 164 28 HOH HOH . P 4 HOH D 8 165 29 HOH HOH . P 4 HOH D 9 166 32 HOH HOH . P 4 HOH D 10 167 35 HOH HOH . P 4 HOH D 11 168 49 HOH HOH . P 4 HOH D 12 169 52 HOH HOH . P 4 HOH D 13 170 56 HOH HOH . P 4 HOH D 14 171 57 HOH HOH . P 4 HOH D 15 172 62 HOH HOH . P 4 HOH D 16 173 63 HOH HOH . P 4 HOH D 17 174 65 HOH HOH . P 4 HOH D 18 175 67 HOH HOH . P 4 HOH D 19 176 71 HOH HOH . P 4 HOH D 20 177 73 HOH HOH . P 4 HOH D 21 178 75 HOH HOH . P 4 HOH D 22 179 78 HOH HOH . P 4 HOH D 23 180 80 HOH HOH . P 4 HOH D 24 181 86 HOH HOH . P 4 HOH D 25 182 95 HOH HOH . P 4 HOH D 26 183 96 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 3 _atom_site.Cartn_x -21.129 _atom_site.Cartn_y -18.158 _atom_site.Cartn_z 51.856 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #