data_3AM6 # _model_server_result.job_id aDjn2eQrt9xYHnkFCSBHmw _model_server_result.datetime_utc '2024-10-11 07:22:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3am6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":301}' # _entry.id 3AM6 # _exptl.entry_id 3AM6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AM6 _cell.length_a 84.12 _cell.length_b 110.487 _cell.length_c 129.116 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AM6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 PISA tetrameric 4 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G 1 1 B,H,I,J 2 1 C,K,L,M 3 1 D,N,O,P 4 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 5 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 K N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 211 A LYS 211 1_555 E C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale2 B NZ LYS 211 B LYS 211 1_555 H C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale3 C NZ LYS 211 C LYS 211 1_555 K C15 RET . C RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale4 D NZ LYS 211 D LYS 211 1_555 N C15 RET . D RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3AM6 _atom_sites.fract_transf_matrix[1][1] 0.011888 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009051 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007745 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 RET A 1 301 301 RET RET . F 3 CLR A 1 401 401 CLR CLR . G 3 CLR A 1 402 402 CLR CLR . H 2 RET B 1 301 301 RET RET . I 3 CLR B 1 401 401 CLR CLR . J 3 CLR B 1 402 402 CLR CLR . K 2 RET C 1 301 301 RET RET . L 3 CLR C 1 401 401 CLR CLR . M 3 CLR C 1 402 402 CLR CLR . N 2 RET D 1 301 301 RET RET . O 3 CLR D 1 401 401 CLR CLR . P 3 CLR D 1 402 402 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . K 2 -5.038 -3.296 19.678 1 2.68 ? C1 RET 301 C 1 HETATM 2 C C2 RET . . . K 2 -3.96 -4.294 19.089 1 2.26 ? C2 RET 301 C 1 HETATM 3 C C3 RET . . . K 2 -2.821 -3.747 18.377 1 2.76 ? C3 RET 301 C 1 HETATM 4 C C4 RET . . . K 2 -2.265 -2.434 18.905 1 2.91 ? C4 RET 301 C 1 HETATM 5 C C5 RET . . . K 2 -3.279 -1.419 19.43 1 3.45 ? C5 RET 301 C 1 HETATM 6 C C6 RET . . . K 2 -4.601 -1.753 19.794 1 3.2 ? C6 RET 301 C 1 HETATM 7 C C7 RET . . . K 2 -5.483 -0.6 20.331 1 5.12 ? C7 RET 301 C 1 HETATM 8 C C8 RET . . . K 2 -6.77 -0.606 20.744 1 7.83 ? C8 RET 301 C 1 HETATM 9 C C9 RET . . . K 2 -7.538 0.434 21.437 1 10.16 ? C9 RET 301 C 1 HETATM 10 C C10 RET . . . K 2 -8.863 0.151 21.688 1 11.41 ? C10 RET 301 C 1 HETATM 11 C C11 RET . . . K 2 -9.881 0.961 22.348 1 12.87 ? C11 RET 301 C 1 HETATM 12 C C12 RET . . . K 2 -11.15 0.538 22.435 1 12.89 ? C12 RET 301 C 1 HETATM 13 C C13 RET . . . K 2 -12.3 1.251 23.016 1 13.58 ? C13 RET 301 C 1 HETATM 14 C C14 RET . . . K 2 -13.518 0.641 22.881 1 14.1 ? C14 RET 301 C 1 HETATM 15 C C15 RET . . . K 2 -14.872 1.134 23.194 1 15.73 ? C15 RET 301 C 1 HETATM 16 C C16 RET . . . K 2 -5.843 -3.956 20.769 1 1.96 ? C16 RET 301 C 1 HETATM 17 C C17 RET . . . K 2 -6.057 -3.365 18.543 1 2.43 ? C17 RET 301 C 1 HETATM 18 C C18 RET . . . K 2 -2.654 -0.029 19.531 1 4.3 ? C18 RET 301 C 1 HETATM 19 C C19 RET . . . K 2 -6.894 1.742 21.865 1 11.09 ? C19 RET 301 C 1 HETATM 20 C C20 RET . . . K 2 -12.126 2.628 23.639 1 13.48 ? C20 RET 301 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #