data_3AM6 # _model_server_result.job_id qjlSOVe9hV9QEDlxALAEAg _model_server_result.datetime_utc '2024-10-11 07:21:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3am6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":402}' # _entry.id 3AM6 # _exptl.entry_id 3AM6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AM6 _cell.length_a 84.12 _cell.length_b 110.487 _cell.length_c 129.116 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AM6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 PISA tetrameric 4 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G 1 1 B,H,I,J 2 1 C,K,L,M 3 1 D,N,O,P 4 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 5 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 I N N ? 3 J N N ? 3 L N N ? 3 M N N ? 3 O N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 211 A LYS 211 1_555 E C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale2 B NZ LYS 211 B LYS 211 1_555 H C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale3 C NZ LYS 211 C LYS 211 1_555 K C15 RET . C RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale4 D NZ LYS 211 D LYS 211 1_555 N C15 RET . D RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3AM6 _atom_sites.fract_transf_matrix[1][1] 0.011888 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009051 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007745 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 RET A 1 301 301 RET RET . F 3 CLR A 1 401 401 CLR CLR . G 3 CLR A 1 402 402 CLR CLR . H 2 RET B 1 301 301 RET RET . I 3 CLR B 1 401 401 CLR CLR . J 3 CLR B 1 402 402 CLR CLR . K 2 RET C 1 301 301 RET RET . L 3 CLR C 1 401 401 CLR CLR . M 3 CLR C 1 402 402 CLR CLR . N 2 RET D 1 301 301 RET RET . O 3 CLR D 1 401 401 CLR CLR . P 3 CLR D 1 402 402 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . J 3 32.769 16.13 -20.827 1 29.17 ? C1 CLR 402 B 1 HETATM 2 C C2 CLR . . . J 3 33.245 17.584 -21.173 1 29.95 ? C2 CLR 402 B 1 HETATM 3 C C3 CLR . . . J 3 34.36 17.996 -20.168 1 28.62 ? C3 CLR 402 B 1 HETATM 4 C C4 CLR . . . J 3 35.583 17.067 -20.141 1 27.47 ? C4 CLR 402 B 1 HETATM 5 C C5 CLR . . . J 3 35.015 15.676 -19.903 1 27.49 ? C5 CLR 402 B 1 HETATM 6 C C6 CLR . . . J 3 35.479 15.036 -18.889 1 27.51 ? C6 CLR 402 B 1 HETATM 7 C C7 CLR . . . J 3 34.961 13.65 -18.544 1 27.88 ? C7 CLR 402 B 1 HETATM 8 C C8 CLR . . . J 3 34.433 12.896 -19.776 1 27.26 ? C8 CLR 402 B 1 HETATM 9 C C9 CLR . . . J 3 33.462 13.691 -20.41 1 27.38 ? C9 CLR 402 B 1 HETATM 10 C C10 CLR . . . J 3 33.941 15.129 -20.838 1 27.96 ? C10 CLR 402 B 1 HETATM 11 C C11 CLR . . . J 3 32.804 12.94 -21.652 1 26.99 ? C11 CLR 402 B 1 HETATM 12 C C12 CLR . . . J 3 32.261 11.522 -21.218 1 26.43 ? C12 CLR 402 B 1 HETATM 13 C C13 CLR . . . J 3 33.406 10.7 -20.624 1 25.77 ? C13 CLR 402 B 1 HETATM 14 C C14 CLR . . . J 3 33.881 11.507 -19.365 1 26.84 ? C14 CLR 402 B 1 HETATM 15 C C15 CLR . . . J 3 34.84 10.53 -18.675 1 27.5 ? C15 CLR 402 B 1 HETATM 16 C C16 CLR . . . J 3 34.034 9.229 -18.809 1 26.47 ? C16 CLR 402 B 1 HETATM 17 C C17 CLR . . . J 3 33.11 9.279 -20.011 1 24.88 ? C17 CLR 402 B 1 HETATM 18 C C18 CLR . . . J 3 34.594 10.626 -21.656 1 27 ? C18 CLR 402 B 1 HETATM 19 C C19 CLR . . . J 3 34.539 15.037 -22.271 1 29.43 ? C19 CLR 402 B 1 HETATM 20 C C20 CLR . . . J 3 33.402 8.034 -20.918 1 22.68 ? C20 CLR 402 B 1 HETATM 21 C C21 CLR . . . J 3 32.454 8.07 -22.129 1 23.19 ? C21 CLR 402 B 1 HETATM 22 C C22 CLR . . . J 3 33.105 6.77 -20.104 1 20.73 ? C22 CLR 402 B 1 HETATM 23 C C23 CLR . . . J 3 33.365 5.476 -20.849 1 18.61 ? C23 CLR 402 B 1 HETATM 24 C C24 CLR . . . J 3 33.019 4.369 -19.86 1 19.81 ? C24 CLR 402 B 1 HETATM 25 C C25 CLR . . . J 3 33.235 2.966 -20.426 1 20.66 ? C25 CLR 402 B 1 HETATM 26 C C26 CLR . . . J 3 32.876 1.953 -19.339 1 20.6 ? C26 CLR 402 B 1 HETATM 27 C C27 CLR . . . J 3 32.324 2.722 -21.626 1 21.82 ? C27 CLR 402 B 1 HETATM 28 O O1 CLR . . . J 3 34.81 19.322 -20.437 1 28.77 ? O1 CLR 402 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #