data_3AM7
#
_model_server_result.job_id            nzO2M2e9tMCotgkKVoaZLQ 
_model_server_result.datetime_utc      '2024-12-21 14:03:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3am7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1000}' 
#
_entry.id    3AM7 
#
_exptl.entry_id    3AM7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              538.215 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3AM7 
_cell.length_a            87.84 
_cell.length_b            87.84 
_cell.length_c            37.75 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3AM7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C11 H19 N5 O14 P3 1' 
_chem_comp.formula_weight    538.215 
_chem_comp.id                MGP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A MGP sing 237 n n 
PA O2A MGP doub 238 n n 
PA O3A MGP sing 239 n n 
PA O5' MGP sing 240 n n 
O3A PB MGP sing 241 n n 
O5' C5' MGP sing 242 n n 
PB O1B MGP sing 243 n n 
PB O2B MGP doub 244 n n 
PB O3B MGP sing 245 n n 
O3B PC MGP sing 246 n n 
PC O1C MGP sing 247 n n 
PC O2C MGP doub 248 n n 
PC O3C MGP sing 249 n n 
C5' C4' MGP sing 250 n n 
C5' H5' MGP sing 251 n n 
C5' "H5'A" MGP sing 252 n n 
C4' O4' MGP sing 253 n n 
C4' C3' MGP sing 254 n n 
C4' H4' MGP sing 255 n n 
O4' C1' MGP sing 256 n n 
C3' O3' MGP sing 257 n n 
C3' C2' MGP sing 258 n n 
C3' H3' MGP sing 259 n n 
O3' HO3' MGP sing 260 n n 
C2' O2' MGP sing 261 n n 
C2' C1' MGP sing 262 n n 
C2' H2' MGP sing 263 n n 
O2' HO2' MGP sing 264 n n 
C1' N9 MGP sing 265 n n 
C1' H1' MGP sing 266 n n 
N9 C8 MGP sing 267 n y 
N9 C4 MGP sing 268 n y 
C8 N7 MGP doub 269 n y 
C8 H8 MGP sing 270 n n 
N7 CM7 MGP sing 271 n n 
N7 C5 MGP sing 272 n y 
CM7 HM7 MGP sing 273 n n 
CM7 HM7A MGP sing 274 n n 
CM7 HM7B MGP sing 275 n n 
C5 C6 MGP sing 276 n n 
C5 C4 MGP doub 277 n y 
C6 O6 MGP doub 278 n n 
C6 N1 MGP sing 279 n n 
N1 C2 MGP sing 280 n n 
N1 HN1 MGP sing 281 n n 
C2 N2 MGP sing 282 n n 
C2 N3 MGP doub 283 n n 
N2 HN2 MGP sing 284 n n 
N2 HN2A MGP sing 285 n n 
N3 C4 MGP sing 286 n n 
O1A H16 MGP sing 287 n n 
O1B H17 MGP sing 288 n n 
O1C H18 MGP sing 289 n n 
O3C H19 MGP sing 290 n n 
#
_atom_sites.entry_id                     3AM7 
_atom_sites.fract_transf_matrix[1][1]    0.011384 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011384 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02649 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MGP A 1 1000 1000 MGP M7G . 
D 4 HOH A 1 1 1 HOH HOH . 
D 4 HOH A 2 2 2 HOH HOH . 
D 4 HOH A 3 3 3 HOH HOH . 
D 4 HOH A 4 4 4 HOH HOH . 
D 4 HOH A 5 5 5 HOH HOH . 
D 4 HOH A 6 6 6 HOH HOH . 
D 4 HOH A 7 7 7 HOH HOH . 
D 4 HOH A 8 8 8 HOH HOH . 
D 4 HOH A 9 9 9 HOH HOH . 
D 4 HOH A 10 10 10 HOH HOH . 
D 4 HOH A 11 11 11 HOH HOH . 
D 4 HOH A 12 12 12 HOH HOH . 
D 4 HOH A 13 13 13 HOH HOH . 
D 4 HOH A 14 14 14 HOH HOH . 
D 4 HOH A 15 15 15 HOH HOH . 
D 4 HOH A 16 16 16 HOH HOH . 
D 4 HOH A 17 17 17 HOH HOH . 
D 4 HOH A 18 18 18 HOH HOH . 
D 4 HOH A 19 20 20 HOH HOH . 
D 4 HOH A 20 21 21 HOH HOH . 
D 4 HOH A 21 22 22 HOH HOH . 
D 4 HOH A 22 23 23 HOH HOH . 
D 4 HOH A 23 24 24 HOH HOH . 
D 4 HOH A 24 25 25 HOH HOH . 
D 4 HOH A 25 26 26 HOH HOH . 
D 4 HOH A 26 218 27 HOH HOH . 
D 4 HOH A 27 219 28 HOH HOH . 
D 4 HOH A 28 220 29 HOH HOH . 
D 4 HOH A 29 221 30 HOH HOH . 
D 4 HOH A 30 222 31 HOH HOH . 
D 4 HOH A 31 223 32 HOH HOH . 
D 4 HOH A 32 224 33 HOH HOH . 
D 4 HOH A 33 225 34 HOH HOH . 
D 4 HOH A 34 226 35 HOH HOH . 
D 4 HOH A 35 227 36 HOH HOH . 
D 4 HOH A 36 228 37 HOH HOH . 
D 4 HOH A 37 229 38 HOH HOH . 
D 4 HOH A 38 230 39 HOH HOH . 
D 4 HOH A 39 231 40 HOH HOH . 
D 4 HOH A 40 232 41 HOH HOH . 
D 4 HOH A 41 233 42 HOH HOH . 
D 4 HOH A 42 234 43 HOH HOH . 
D 4 HOH A 43 235 44 HOH HOH . 
D 4 HOH A 44 236 45 HOH HOH . 
D 4 HOH A 45 237 46 HOH HOH . 
D 4 HOH A 46 238 47 HOH HOH . 
D 4 HOH A 47 239 48 HOH HOH . 
D 4 HOH A 48 240 50 HOH HOH . 
D 4 HOH A 49 241 51 HOH HOH . 
D 4 HOH A 50 242 52 HOH HOH . 
D 4 HOH A 51 243 54 HOH HOH . 
D 4 HOH A 52 244 55 HOH HOH . 
D 4 HOH A 53 245 56 HOH HOH . 
D 4 HOH A 54 246 57 HOH HOH . 
D 4 HOH A 55 247 58 HOH HOH . 
D 4 HOH A 56 248 59 HOH HOH . 
D 4 HOH A 57 249 60 HOH HOH . 
D 4 HOH A 58 250 61 HOH HOH . 
D 4 HOH A 59 251 62 HOH HOH . 
D 4 HOH A 60 252 63 HOH HOH . 
D 4 HOH A 61 253 64 HOH HOH . 
D 4 HOH A 62 254 65 HOH HOH . 
D 4 HOH A 63 255 66 HOH HOH . 
D 4 HOH A 64 256 67 HOH HOH . 
D 4 HOH A 65 257 68 HOH HOH . 
D 4 HOH A 66 258 69 HOH HOH . 
D 4 HOH A 67 259 70 HOH HOH . 
D 4 HOH A 68 260 72 HOH HOH . 
D 4 HOH A 69 261 73 HOH HOH . 
D 4 HOH A 70 262 74 HOH HOH . 
D 4 HOH A 71 263 75 HOH HOH . 
D 4 HOH A 72 264 77 HOH HOH . 
D 4 HOH A 73 265 78 HOH HOH . 
D 4 HOH A 74 266 79 HOH HOH . 
D 4 HOH A 75 267 80 HOH HOH . 
D 4 HOH A 76 268 81 HOH HOH . 
D 4 HOH A 77 269 82 HOH HOH . 
D 4 HOH A 78 270 83 HOH HOH . 
D 4 HOH A 79 271 84 HOH HOH . 
D 4 HOH A 80 272 85 HOH HOH . 
D 4 HOH A 81 273 87 HOH HOH . 
D 4 HOH A 82 274 88 HOH HOH . 
D 4 HOH A 83 275 90 HOH HOH . 
D 4 HOH A 84 276 91 HOH HOH . 
D 4 HOH A 85 277 92 HOH HOH . 
D 4 HOH A 86 278 94 HOH HOH . 
E 4 HOH B 1 19 19 HOH HOH . 
E 4 HOH B 2 66 49 HOH HOH . 
E 4 HOH B 3 67 53 HOH HOH . 
E 4 HOH B 4 71 71 HOH HOH . 
E 4 HOH B 5 86 86 HOH HOH . 
E 4 HOH B 6 89 89 HOH HOH . 
E 4 HOH B 7 93 93 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA MGP . . . C 3 -8.868 18.801 5.908 1 39.72 ? PA MGP 1000 A 1 
HETATM 2 O O1A MGP . . . C 3 -9.39 20.182 5.649 1 39.24 ? O1A MGP 1000 A 1 
HETATM 3 O O2A MGP . . . C 3 -7.677 18.567 5.027 1 41.23 ? O2A MGP 1000 A 1 
HETATM 4 O O3A MGP . . . C 3 -8.437 18.636 7.427 1 44.5 ? O3A MGP 1000 A 1 
HETATM 5 O O5' MGP . . . C 3 -10.027 17.684 5.479 1 39.6 ? O5' MGP 1000 A 1 
HETATM 6 P PB MGP . . . C 3 -9.416 18.821 8.681 1 46.74 ? PB MGP 1000 A 1 
HETATM 7 O O1B MGP . . . C 3 -10.513 19.797 8.406 1 46.29 ? O1B MGP 1000 A 1 
HETATM 8 O O2B MGP . . . C 3 -8.536 19.256 9.77 1 47.84 ? O2B MGP 1000 A 1 
HETATM 9 O O3B MGP . . . C 3 -10.008 17.554 9.071 1 54.21 ? O3B MGP 1000 A 1 
HETATM 10 P PC MGP . . . C 3 -9.483 16.106 9.505 1 63.93 ? PC MGP 1000 A 1 
HETATM 11 O O1C MGP . . . C 3 -9.976 16.19 11.078 1 62.02 ? O1C MGP 1000 A 1 
HETATM 12 O O2C MGP . . . C 3 -7.97 16.083 9.405 1 62.29 ? O2C MGP 1000 A 1 
HETATM 13 O O3C MGP . . . C 3 -10.015 14.83 8.86 1 63.9 ? O3C MGP 1000 A 1 
HETATM 14 C C5' MGP . . . C 3 -11.407 17.742 5.893 1 32.69 ? C5' MGP 1000 A 1 
HETATM 15 C C4' MGP . . . C 3 -12.366 17.21 4.891 1 32.15 ? C4' MGP 1000 A 1 
HETATM 16 O O4' MGP . . . C 3 -12.383 18.181 3.753 1 29.57 ? O4' MGP 1000 A 1 
HETATM 17 C C3' MGP . . . C 3 -12.029 15.917 4.129 1 31.46 ? C3' MGP 1000 A 1 
HETATM 18 O O3' MGP . . . C 3 -12.246 14.686 4.881 1 29.5 ? O3' MGP 1000 A 1 
HETATM 19 C C2' MGP . . . C 3 -12.891 16.016 2.902 1 30.88 ? C2' MGP 1000 A 1 
HETATM 20 O O2' MGP . . . C 3 -14.259 15.593 3.22 1 32.94 ? O2' MGP 1000 A 1 
HETATM 21 C C1' MGP . . . C 3 -12.705 17.474 2.5 1 29.19 ? C1' MGP 1000 A 1 
HETATM 22 N N9 MGP . . . C 3 -11.491 17.823 1.62 1 28.18 ? N9 MGP 1000 A 1 
HETATM 23 C C8 MGP . . . C 3 -10.257 18.357 1.891 1 27.64 ? C8 MGP 1000 A 1 
HETATM 24 N N7 MGP . . . C 3 -9.553 18.463 0.787 1 27.31 ? N7 MGP 1000 A 1 
HETATM 25 C CM7 MGP . . . C 3 -8.177 18.998 0.729 1 26.19 ? CM7 MGP 1000 A 1 
HETATM 26 C C5 MGP . . . C 3 -10.307 17.975 -0.408 1 24.71 ? C5 MGP 1000 A 1 
HETATM 27 C C6 MGP . . . C 3 -10.146 17.827 -1.734 1 24.58 ? C6 MGP 1000 A 1 
HETATM 28 O O6 MGP . . . C 3 -9.064 18.153 -2.374 1 26.1 ? O6 MGP 1000 A 1 
HETATM 29 N N1 MGP . . . C 3 -11.291 17.264 -2.415 1 22.59 ? N1 MGP 1000 A 1 
HETATM 30 C C2 MGP . . . C 3 -12.512 16.871 -1.831 1 24.06 ? C2 MGP 1000 A 1 
HETATM 31 N N2 MGP . . . C 3 -13.468 16.373 -2.596 1 24.81 ? N2 MGP 1000 A 1 
HETATM 32 N N3 MGP . . . C 3 -12.693 17.017 -0.46 1 26.39 ? N3 MGP 1000 A 1 
HETATM 33 C C4 MGP . . . C 3 -11.564 17.581 0.267 1 25.44 ? C4 MGP 1000 A 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           33 
#