data_3AM7 # _model_server_result.job_id BshchxrqBt_bEv5S2CZxhQ _model_server_result.datetime_utc '2024-11-04 05:23:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3am7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1000}' # _entry.id 3AM7 # _exptl.entry_id 3AM7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 538.215 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AM7 _cell.length_a 87.84 _cell.length_b 87.84 _cell.length_c 37.75 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AM7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H19 N5 O14 P3 1' _chem_comp.formula_weight 538.215 _chem_comp.id MGP _chem_comp.mon_nstd_flag . _chem_comp.name "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A MGP sing 237 n n PA O2A MGP doub 238 n n PA O3A MGP sing 239 n n PA O5' MGP sing 240 n n O3A PB MGP sing 241 n n O5' C5' MGP sing 242 n n PB O1B MGP sing 243 n n PB O2B MGP doub 244 n n PB O3B MGP sing 245 n n O3B PC MGP sing 246 n n PC O1C MGP sing 247 n n PC O2C MGP doub 248 n n PC O3C MGP sing 249 n n C5' C4' MGP sing 250 n n C5' H5' MGP sing 251 n n C5' "H5'A" MGP sing 252 n n C4' O4' MGP sing 253 n n C4' C3' MGP sing 254 n n C4' H4' MGP sing 255 n n O4' C1' MGP sing 256 n n C3' O3' MGP sing 257 n n C3' C2' MGP sing 258 n n C3' H3' MGP sing 259 n n O3' HO3' MGP sing 260 n n C2' O2' MGP sing 261 n n C2' C1' MGP sing 262 n n C2' H2' MGP sing 263 n n O2' HO2' MGP sing 264 n n C1' N9 MGP sing 265 n n C1' H1' MGP sing 266 n n N9 C8 MGP sing 267 n y N9 C4 MGP sing 268 n y C8 N7 MGP doub 269 n y C8 H8 MGP sing 270 n n N7 CM7 MGP sing 271 n n N7 C5 MGP sing 272 n y CM7 HM7 MGP sing 273 n n CM7 HM7A MGP sing 274 n n CM7 HM7B MGP sing 275 n n C5 C6 MGP sing 276 n n C5 C4 MGP doub 277 n y C6 O6 MGP doub 278 n n C6 N1 MGP sing 279 n n N1 C2 MGP sing 280 n n N1 HN1 MGP sing 281 n n C2 N2 MGP sing 282 n n C2 N3 MGP doub 283 n n N2 HN2 MGP sing 284 n n N2 HN2A MGP sing 285 n n N3 C4 MGP sing 286 n n O1A H16 MGP sing 287 n n O1B H17 MGP sing 288 n n O1C H18 MGP sing 289 n n O3C H19 MGP sing 290 n n # _atom_sites.entry_id 3AM7 _atom_sites.fract_transf_matrix[1][1] 0.011384 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011384 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02649 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MGP A 1 1000 1000 MGP M7G . D 4 HOH A 1 1 1 HOH HOH . D 4 HOH A 2 2 2 HOH HOH . D 4 HOH A 3 3 3 HOH HOH . D 4 HOH A 4 4 4 HOH HOH . D 4 HOH A 5 5 5 HOH HOH . D 4 HOH A 6 6 6 HOH HOH . D 4 HOH A 7 7 7 HOH HOH . D 4 HOH A 8 8 8 HOH HOH . D 4 HOH A 9 9 9 HOH HOH . D 4 HOH A 10 10 10 HOH HOH . D 4 HOH A 11 11 11 HOH HOH . D 4 HOH A 12 12 12 HOH HOH . D 4 HOH A 13 13 13 HOH HOH . D 4 HOH A 14 14 14 HOH HOH . D 4 HOH A 15 15 15 HOH HOH . D 4 HOH A 16 16 16 HOH HOH . D 4 HOH A 17 17 17 HOH HOH . D 4 HOH A 18 18 18 HOH HOH . D 4 HOH A 19 20 20 HOH HOH . D 4 HOH A 20 21 21 HOH HOH . D 4 HOH A 21 22 22 HOH HOH . D 4 HOH A 22 23 23 HOH HOH . D 4 HOH A 23 24 24 HOH HOH . D 4 HOH A 24 25 25 HOH HOH . D 4 HOH A 25 26 26 HOH HOH . D 4 HOH A 26 218 27 HOH HOH . D 4 HOH A 27 219 28 HOH HOH . D 4 HOH A 28 220 29 HOH HOH . D 4 HOH A 29 221 30 HOH HOH . D 4 HOH A 30 222 31 HOH HOH . D 4 HOH A 31 223 32 HOH HOH . D 4 HOH A 32 224 33 HOH HOH . D 4 HOH A 33 225 34 HOH HOH . D 4 HOH A 34 226 35 HOH HOH . D 4 HOH A 35 227 36 HOH HOH . D 4 HOH A 36 228 37 HOH HOH . D 4 HOH A 37 229 38 HOH HOH . D 4 HOH A 38 230 39 HOH HOH . D 4 HOH A 39 231 40 HOH HOH . D 4 HOH A 40 232 41 HOH HOH . D 4 HOH A 41 233 42 HOH HOH . D 4 HOH A 42 234 43 HOH HOH . D 4 HOH A 43 235 44 HOH HOH . D 4 HOH A 44 236 45 HOH HOH . D 4 HOH A 45 237 46 HOH HOH . D 4 HOH A 46 238 47 HOH HOH . D 4 HOH A 47 239 48 HOH HOH . D 4 HOH A 48 240 50 HOH HOH . D 4 HOH A 49 241 51 HOH HOH . D 4 HOH A 50 242 52 HOH HOH . D 4 HOH A 51 243 54 HOH HOH . D 4 HOH A 52 244 55 HOH HOH . D 4 HOH A 53 245 56 HOH HOH . D 4 HOH A 54 246 57 HOH HOH . D 4 HOH A 55 247 58 HOH HOH . D 4 HOH A 56 248 59 HOH HOH . D 4 HOH A 57 249 60 HOH HOH . D 4 HOH A 58 250 61 HOH HOH . D 4 HOH A 59 251 62 HOH HOH . D 4 HOH A 60 252 63 HOH HOH . D 4 HOH A 61 253 64 HOH HOH . D 4 HOH A 62 254 65 HOH HOH . D 4 HOH A 63 255 66 HOH HOH . D 4 HOH A 64 256 67 HOH HOH . D 4 HOH A 65 257 68 HOH HOH . D 4 HOH A 66 258 69 HOH HOH . D 4 HOH A 67 259 70 HOH HOH . D 4 HOH A 68 260 72 HOH HOH . D 4 HOH A 69 261 73 HOH HOH . D 4 HOH A 70 262 74 HOH HOH . D 4 HOH A 71 263 75 HOH HOH . D 4 HOH A 72 264 77 HOH HOH . D 4 HOH A 73 265 78 HOH HOH . D 4 HOH A 74 266 79 HOH HOH . D 4 HOH A 75 267 80 HOH HOH . D 4 HOH A 76 268 81 HOH HOH . D 4 HOH A 77 269 82 HOH HOH . D 4 HOH A 78 270 83 HOH HOH . D 4 HOH A 79 271 84 HOH HOH . D 4 HOH A 80 272 85 HOH HOH . D 4 HOH A 81 273 87 HOH HOH . D 4 HOH A 82 274 88 HOH HOH . D 4 HOH A 83 275 90 HOH HOH . D 4 HOH A 84 276 91 HOH HOH . D 4 HOH A 85 277 92 HOH HOH . D 4 HOH A 86 278 94 HOH HOH . E 4 HOH B 1 19 19 HOH HOH . E 4 HOH B 2 66 49 HOH HOH . E 4 HOH B 3 67 53 HOH HOH . E 4 HOH B 4 71 71 HOH HOH . E 4 HOH B 5 86 86 HOH HOH . E 4 HOH B 6 89 89 HOH HOH . E 4 HOH B 7 93 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA MGP . . . C 3 -8.868 18.801 5.908 1 39.72 ? PA MGP 1000 A 1 HETATM 2 O O1A MGP . . . C 3 -9.39 20.182 5.649 1 39.24 ? O1A MGP 1000 A 1 HETATM 3 O O2A MGP . . . C 3 -7.677 18.567 5.027 1 41.23 ? O2A MGP 1000 A 1 HETATM 4 O O3A MGP . . . C 3 -8.437 18.636 7.427 1 44.5 ? O3A MGP 1000 A 1 HETATM 5 O O5' MGP . . . C 3 -10.027 17.684 5.479 1 39.6 ? O5' MGP 1000 A 1 HETATM 6 P PB MGP . . . C 3 -9.416 18.821 8.681 1 46.74 ? PB MGP 1000 A 1 HETATM 7 O O1B MGP . . . C 3 -10.513 19.797 8.406 1 46.29 ? O1B MGP 1000 A 1 HETATM 8 O O2B MGP . . . C 3 -8.536 19.256 9.77 1 47.84 ? O2B MGP 1000 A 1 HETATM 9 O O3B MGP . . . C 3 -10.008 17.554 9.071 1 54.21 ? O3B MGP 1000 A 1 HETATM 10 P PC MGP . . . C 3 -9.483 16.106 9.505 1 63.93 ? PC MGP 1000 A 1 HETATM 11 O O1C MGP . . . C 3 -9.976 16.19 11.078 1 62.02 ? O1C MGP 1000 A 1 HETATM 12 O O2C MGP . . . C 3 -7.97 16.083 9.405 1 62.29 ? O2C MGP 1000 A 1 HETATM 13 O O3C MGP . . . C 3 -10.015 14.83 8.86 1 63.9 ? O3C MGP 1000 A 1 HETATM 14 C C5' MGP . . . C 3 -11.407 17.742 5.893 1 32.69 ? C5' MGP 1000 A 1 HETATM 15 C C4' MGP . . . C 3 -12.366 17.21 4.891 1 32.15 ? C4' MGP 1000 A 1 HETATM 16 O O4' MGP . . . C 3 -12.383 18.181 3.753 1 29.57 ? O4' MGP 1000 A 1 HETATM 17 C C3' MGP . . . C 3 -12.029 15.917 4.129 1 31.46 ? C3' MGP 1000 A 1 HETATM 18 O O3' MGP . . . C 3 -12.246 14.686 4.881 1 29.5 ? O3' MGP 1000 A 1 HETATM 19 C C2' MGP . . . C 3 -12.891 16.016 2.902 1 30.88 ? C2' MGP 1000 A 1 HETATM 20 O O2' MGP . . . C 3 -14.259 15.593 3.22 1 32.94 ? O2' MGP 1000 A 1 HETATM 21 C C1' MGP . . . C 3 -12.705 17.474 2.5 1 29.19 ? C1' MGP 1000 A 1 HETATM 22 N N9 MGP . . . C 3 -11.491 17.823 1.62 1 28.18 ? N9 MGP 1000 A 1 HETATM 23 C C8 MGP . . . C 3 -10.257 18.357 1.891 1 27.64 ? C8 MGP 1000 A 1 HETATM 24 N N7 MGP . . . C 3 -9.553 18.463 0.787 1 27.31 ? N7 MGP 1000 A 1 HETATM 25 C CM7 MGP . . . C 3 -8.177 18.998 0.729 1 26.19 ? CM7 MGP 1000 A 1 HETATM 26 C C5 MGP . . . C 3 -10.307 17.975 -0.408 1 24.71 ? C5 MGP 1000 A 1 HETATM 27 C C6 MGP . . . C 3 -10.146 17.827 -1.734 1 24.58 ? C6 MGP 1000 A 1 HETATM 28 O O6 MGP . . . C 3 -9.064 18.153 -2.374 1 26.1 ? O6 MGP 1000 A 1 HETATM 29 N N1 MGP . . . C 3 -11.291 17.264 -2.415 1 22.59 ? N1 MGP 1000 A 1 HETATM 30 C C2 MGP . . . C 3 -12.512 16.871 -1.831 1 24.06 ? C2 MGP 1000 A 1 HETATM 31 N N2 MGP . . . C 3 -13.468 16.373 -2.596 1 24.81 ? N2 MGP 1000 A 1 HETATM 32 N N3 MGP . . . C 3 -12.693 17.017 -0.46 1 26.39 ? N3 MGP 1000 A 1 HETATM 33 C C4 MGP . . . C 3 -11.564 17.581 0.267 1 25.44 ? C4 MGP 1000 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 33 #