data_3AMB
#
_model_server_result.job_id            EnR2RB1mXKanhr4NW0-gNA 
_model_server_result.datetime_utc      '2024-10-14 14:17:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3amb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":351}' 
#
_entry.id    3AMB 
#
_exptl.entry_id    3AMB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              464.586 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CYCLOPROPANECARBOXYLIC ACID {4-[4-(4-METHYL-PIPERAZIN-1-YL)-6-(5-METHYL-2H-PYRAZOL-3-YLAMINO)-PYRIMIDIN-2-YLSULFANYL]-PHENYL}-AMIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3AMB 
_cell.length_a            72.75 
_cell.length_b            75.24 
_cell.length_c            80.39 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3AMB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 10 A GLY 9 1_555 A N SEP 11 A SEP 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale2 A C SEP 11 A SEP 10 1_555 A N GLU 12 A GLU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale3 A C TRP 197 A TRP 196 1_555 A N TPO 198 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale4 A C TPO 198 A TPO 197 1_555 A N LEU 199 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale5 A C VAL 338 A VAL 337 1_555 A N SEP 339 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale6 A C SEP 339 A SEP 338 1_555 A N ILE 340 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
#
_chem_comp.formula           'C23 H28 N8 O S' 
_chem_comp.formula_weight    464.586 
_chem_comp.id                VX6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CYCLOPROPANECARBOXYLIC ACID {4-[4-(4-METHYL-PIPERAZIN-1-YL)-6-(5-METHYL-2H-PYRAZOL-3-YLAMINO)-PYRIMIDIN-2-YLSULFANYL]-PHENYL}-AMIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 VX6 sing 415 n n 
N1 C6 VX6 sing 416 n n 
N1 C7 VX6 sing 417 n n 
C2 C3 VX6 sing 418 n n 
C2 H21 VX6 sing 419 n n 
C2 H22 VX6 sing 420 n n 
C3 N4 VX6 sing 421 n n 
C3 H31 VX6 sing 422 n n 
C3 H32 VX6 sing 423 n n 
N4 C5 VX6 sing 424 n n 
N4 C8 VX6 sing 425 n n 
C5 C6 VX6 sing 426 n n 
C5 H51 VX6 sing 427 n n 
C5 H52 VX6 sing 428 n n 
C6 H61 VX6 sing 429 n n 
C6 H62 VX6 sing 430 n n 
C7 H71 VX6 sing 431 n n 
C7 H72 VX6 sing 432 n n 
C7 H73 VX6 sing 433 n n 
C8 C9 VX6 sing 434 n y 
C8 N13 VX6 doub 435 n y 
C9 C10 VX6 doub 436 n y 
C9 H9 VX6 sing 437 n n 
C10 N11 VX6 sing 438 n y 
C10 N14 VX6 sing 439 n n 
N11 C12 VX6 doub 440 n y 
C12 N13 VX6 sing 441 n y 
C12 S23 VX6 sing 442 n n 
N14 C15 VX6 sing 443 n n 
N14 H14 VX6 sing 444 n n 
C15 C17 VX6 doub 445 n y 
C15 N20 VX6 sing 446 n y 
C17 C18 VX6 sing 447 n y 
C17 H17 VX6 sing 448 n n 
C18 N19 VX6 doub 449 n y 
C18 C21 VX6 sing 450 n n 
N19 N20 VX6 sing 451 n y 
N20 H20 VX6 sing 452 n n 
C21 H211 VX6 sing 453 n n 
C21 H212 VX6 sing 454 n n 
C21 H213 VX6 sing 455 n n 
S23 C24 VX6 sing 456 n n 
C24 C25 VX6 sing 457 n y 
C24 C29 VX6 doub 458 n y 
C25 C26 VX6 doub 459 n y 
C25 H25 VX6 sing 460 n n 
C26 C27 VX6 sing 461 n y 
C26 H26 VX6 sing 462 n n 
C27 C28 VX6 doub 463 n y 
C27 N30 VX6 sing 464 n n 
C28 C29 VX6 sing 465 n y 
C28 H28 VX6 sing 466 n n 
C29 H29 VX6 sing 467 n n 
N30 C31 VX6 sing 468 n n 
N30 H30 VX6 sing 469 n n 
C31 O32 VX6 doub 470 n n 
C31 C33 VX6 sing 471 n n 
C33 C34 VX6 sing 472 n n 
C33 C35 VX6 sing 473 n n 
C33 H33 VX6 sing 474 n n 
C34 C35 VX6 sing 475 n n 
C34 H341 VX6 sing 476 n n 
C34 H342 VX6 sing 477 n n 
C35 H351 VX6 sing 478 n n 
C35 H352 VX6 sing 479 n n 
#
_atom_sites.entry_id                     3AMB 
_atom_sites.fract_transf_matrix[1][1]    0.013746 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013291 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012439 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 VX6 A 1 351 1 VX6 VX6 . 
D 4 HOH A 1 352 1 HOH HOH . 
D 4 HOH A 2 353 2 HOH HOH . 
D 4 HOH A 3 354 3 HOH HOH . 
D 4 HOH A 4 355 4 HOH HOH . 
D 4 HOH A 5 356 5 HOH HOH . 
D 4 HOH A 6 357 6 HOH HOH . 
D 4 HOH A 7 358 7 HOH HOH . 
D 4 HOH A 8 359 8 HOH HOH . 
D 4 HOH A 9 360 11 HOH HOH . 
D 4 HOH A 10 361 12 HOH HOH . 
D 4 HOH A 11 362 13 HOH HOH . 
D 4 HOH A 12 363 14 HOH HOH . 
D 4 HOH A 13 364 15 HOH HOH . 
D 4 HOH A 14 365 16 HOH HOH . 
D 4 HOH A 15 366 17 HOH HOH . 
D 4 HOH A 16 367 18 HOH HOH . 
D 4 HOH A 17 368 20 HOH HOH . 
D 4 HOH A 18 369 21 HOH HOH . 
D 4 HOH A 19 370 22 HOH HOH . 
D 4 HOH A 20 371 23 HOH HOH . 
D 4 HOH A 21 372 24 HOH HOH . 
D 4 HOH A 22 373 25 HOH HOH . 
D 4 HOH A 23 374 27 HOH HOH . 
D 4 HOH A 24 375 28 HOH HOH . 
D 4 HOH A 25 376 29 HOH HOH . 
D 4 HOH A 26 377 30 HOH HOH . 
D 4 HOH A 27 378 31 HOH HOH . 
D 4 HOH A 28 379 33 HOH HOH . 
D 4 HOH A 29 380 34 HOH HOH . 
D 4 HOH A 30 381 35 HOH HOH . 
D 4 HOH A 31 382 36 HOH HOH . 
D 4 HOH A 32 383 37 HOH HOH . 
D 4 HOH A 33 384 38 HOH HOH . 
D 4 HOH A 34 385 39 HOH HOH . 
D 4 HOH A 35 386 40 HOH HOH . 
D 4 HOH A 36 387 42 HOH HOH . 
D 4 HOH A 37 388 43 HOH HOH . 
D 4 HOH A 38 389 44 HOH HOH . 
D 4 HOH A 39 390 45 HOH HOH . 
D 4 HOH A 40 391 47 HOH HOH . 
D 4 HOH A 41 392 48 HOH HOH . 
D 4 HOH A 42 393 49 HOH HOH . 
D 4 HOH A 43 394 50 HOH HOH . 
D 4 HOH A 44 395 51 HOH HOH . 
D 4 HOH A 45 396 53 HOH HOH . 
D 4 HOH A 46 397 54 HOH HOH . 
D 4 HOH A 47 398 55 HOH HOH . 
D 4 HOH A 48 399 56 HOH HOH . 
D 4 HOH A 49 400 57 HOH HOH . 
D 4 HOH A 50 401 58 HOH HOH . 
D 4 HOH A 51 402 59 HOH HOH . 
D 4 HOH A 52 403 60 HOH HOH . 
D 4 HOH A 53 404 62 HOH HOH . 
D 4 HOH A 54 405 63 HOH HOH . 
D 4 HOH A 55 406 64 HOH HOH . 
D 4 HOH A 56 407 65 HOH HOH . 
D 4 HOH A 57 408 66 HOH HOH . 
D 4 HOH A 58 409 67 HOH HOH . 
D 4 HOH A 59 410 68 HOH HOH . 
D 4 HOH A 60 411 69 HOH HOH . 
D 4 HOH A 61 412 70 HOH HOH . 
D 4 HOH A 62 413 71 HOH HOH . 
D 4 HOH A 63 414 73 HOH HOH . 
E 4 HOH B 1 25 9 HOH HOH . 
E 4 HOH B 2 26 26 HOH HOH . 
E 4 HOH B 3 27 10 HOH HOH . 
E 4 HOH B 4 28 19 HOH HOH . 
E 4 HOH B 5 46 46 HOH HOH . 
E 4 HOH B 6 52 52 HOH HOH . 
E 4 HOH B 7 61 61 HOH HOH . 
E 4 HOH B 8 72 72 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 VX6 . . . C 3 -31.751 -8.481 -14.485 1 24.22 ? N1 VX6 351 A 1 
HETATM 2 C C2 VX6 . . . C 3 -30.341 -8.625 -14.049 1 23.36 ? C2 VX6 351 A 1 
HETATM 3 C C3 VX6 . . . C 3 -30.198 -9.738 -13.002 1 23.8 ? C3 VX6 351 A 1 
HETATM 4 N N4 VX6 . . . C 3 -31.282 -9.631 -11.961 1 23.09 ? N4 VX6 351 A 1 
HETATM 5 C C5 VX6 . . . C 3 -32.687 -9.355 -12.402 1 24.65 ? C5 VX6 351 A 1 
HETATM 6 C C6 VX6 . . . C 3 -32.681 -8.169 -13.373 1 24.36 ? C6 VX6 351 A 1 
HETATM 7 C C7 VX6 . . . C 3 -31.818 -7.373 -15.442 1 24.85 ? C7 VX6 351 A 1 
HETATM 8 C C8 VX6 . . . C 3 -30.969 -9.757 -10.585 1 20.65 ? C8 VX6 351 A 1 
HETATM 9 C C9 VX6 . . . C 3 -31.939 -9.69 -9.58 1 18.68 ? C9 VX6 351 A 1 
HETATM 10 C C10 VX6 . . . C 3 -31.557 -9.807 -8.236 1 17.07 ? C10 VX6 351 A 1 
HETATM 11 N N11 VX6 . . . C 3 -30.257 -9.98 -7.947 1 17.42 ? N11 VX6 351 A 1 
HETATM 12 C C12 VX6 . . . C 3 -29.341 -10.038 -8.929 1 19.49 ? C12 VX6 351 A 1 
HETATM 13 N N13 VX6 . . . C 3 -29.69 -9.929 -10.222 1 20.49 ? N13 VX6 351 A 1 
HETATM 14 N N14 VX6 . . . C 3 -32.502 -9.734 -7.289 1 14.98 ? N14 VX6 351 A 1 
HETATM 15 C C15 VX6 . . . C 3 -32.39 -9.865 -5.952 1 16.96 ? C15 VX6 351 A 1 
HETATM 16 C C17 VX6 . . . C 3 -31.316 -10.134 -5.175 1 16.81 ? C17 VX6 351 A 1 
HETATM 17 C C18 VX6 . . . C 3 -31.823 -10.142 -3.94 1 15.95 ? C18 VX6 351 A 1 
HETATM 18 N N19 VX6 . . . C 3 -33.124 -9.883 -3.994 1 17.39 ? N19 VX6 351 A 1 
HETATM 19 N N20 VX6 . . . C 3 -33.448 -9.708 -5.167 1 16.16 ? N20 VX6 351 A 1 
HETATM 20 C C21 VX6 . . . C 3 -31.084 -10.397 -2.618 1 16.05 ? C21 VX6 351 A 1 
HETATM 21 S S23 VX6 . . . C 3 -27.647 -10.277 -8.587 1 22.34 ? S23 VX6 351 A 1 
HETATM 22 C C24 VX6 . . . C 3 -27.498 -9.983 -6.84 1 19.77 ? C24 VX6 351 A 1 
HETATM 23 C C25 VX6 . . . C 3 -27.455 -8.68 -6.342 1 20.35 ? C25 VX6 351 A 1 
HETATM 24 C C26 VX6 . . . C 3 -27.336 -8.444 -4.964 1 19.29 ? C26 VX6 351 A 1 
HETATM 25 C C27 VX6 . . . C 3 -27.235 -9.517 -4.076 1 18.75 ? C27 VX6 351 A 1 
HETATM 26 C C28 VX6 . . . C 3 -27.25 -10.822 -4.588 1 19.56 ? C28 VX6 351 A 1 
HETATM 27 C C29 VX6 . . . C 3 -27.385 -11.057 -5.961 1 19.01 ? C29 VX6 351 A 1 
HETATM 28 N N30 VX6 . . . C 3 -27.094 -9.243 -2.764 1 19.86 ? N30 VX6 351 A 1 
HETATM 29 C C31 VX6 . . . C 3 -27.142 -10.087 -1.735 1 19.57 ? C31 VX6 351 A 1 
HETATM 30 O O32 VX6 . . . C 3 -27.365 -11.304 -1.798 1 20.93 ? O32 VX6 351 A 1 
HETATM 31 C C33 VX6 . . . C 3 -26.92 -9.406 -0.399 1 20.46 ? C33 VX6 351 A 1 
HETATM 32 C C34 VX6 . . . C 3 -27.811 -9.928 0.748 1 19.76 ? C34 VX6 351 A 1 
HETATM 33 C C35 VX6 . . . C 3 -26.31 -10.276 0.706 1 21.05 ? C35 VX6 351 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           33 
#