data_3AMG
#
_model_server_result.job_id            IsQVpAuCx2wTmucqJB2Abw 
_model_server_result.datetime_utc      '2025-02-26 23:38:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3amg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":400}' 
#
_entry.id    3AMG 
#
_exptl.entry_id    3AMG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.57 
_cell.angle_gamma         90 
_cell.entry_id            3AMG 
_cell.length_a            60.979 
_cell.length_b            73.356 
_cell.length_c            62.192 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3AMG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E 1 1 
B,C,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   BGC 
_pdbx_entity_branch_link.comp_id_2                   BGC 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n C BGC 1 C 1 BGC ? 402 CBI 
2 n C BGC 2 C 2 BGC ? 402 CBI 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            C 
_struct_conn.ptnr1_label_atom_id            O4 
_struct_conn.ptnr1_label_comp_id            BGC 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             C 
_struct_conn.ptnr1_auth_comp_id             BGC 
_struct_conn.ptnr1_auth_seq_id              1 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            C1 
_struct_conn.ptnr2_label_comp_id            BGC 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             C 
_struct_conn.ptnr2_auth_comp_id             BGC 
_struct_conn.ptnr2_auth_seq_id              2 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.438 
_struct_conn.pdbx_value_order               sing 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                BGC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     beta-D-glucose;D-glucose;glucose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C3 BGC sing 70 n n 
C2 C1 BGC sing 71 n n 
C2 O2 BGC sing 72 n n 
C2 H2 BGC sing 73 n n 
C3 C4 BGC sing 74 n n 
C3 O3 BGC sing 75 n n 
C3 H3 BGC sing 76 n n 
C4 C5 BGC sing 77 n n 
C4 O4 BGC sing 78 n n 
C4 H4 BGC sing 79 n n 
C5 C6 BGC sing 80 n n 
C5 O5 BGC sing 81 n n 
C5 H5 BGC sing 82 n n 
C6 O6 BGC sing 83 n n 
C6 H61 BGC sing 84 n n 
C6 H62 BGC sing 85 n n 
C1 O1 BGC sing 86 n n 
C1 O5 BGC sing 87 n n 
C1 H1 BGC sing 88 n n 
O1 HO1 BGC sing 89 n n 
O2 HO2 BGC sing 90 n n 
O3 HO3 BGC sing 91 n n 
O4 HO4 BGC sing 92 n n 
O6 HO6 BGC sing 93 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
BGC DGlcpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
BGC b-D-glucopyranose 'COMMON NAME' GMML 1 
BGC b-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
BGC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3AMG 
_atom_sites.fract_transf_matrix[1][1]    0.016399 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002179 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013632 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016221 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 BGC A 1 400 400 BGC BGC . 
E 4 HOH A 1 318 1 HOH WAT . 
E 4 HOH A 2 319 2 HOH WAT . 
E 4 HOH A 3 320 3 HOH WAT . 
E 4 HOH A 4 321 5 HOH WAT . 
E 4 HOH A 5 322 6 HOH WAT . 
E 4 HOH A 6 323 8 HOH WAT . 
E 4 HOH A 7 324 9 HOH WAT . 
E 4 HOH A 8 325 10 HOH WAT . 
E 4 HOH A 9 326 11 HOH WAT . 
E 4 HOH A 10 327 13 HOH WAT . 
E 4 HOH A 11 328 16 HOH WAT . 
E 4 HOH A 12 329 18 HOH WAT . 
E 4 HOH A 13 330 22 HOH WAT . 
E 4 HOH A 14 331 24 HOH WAT . 
E 4 HOH A 15 332 29 HOH WAT . 
E 4 HOH A 16 333 30 HOH WAT . 
E 4 HOH A 17 334 32 HOH WAT . 
E 4 HOH A 18 335 33 HOH WAT . 
E 4 HOH A 19 336 35 HOH WAT . 
E 4 HOH A 20 337 38 HOH WAT . 
E 4 HOH A 21 338 39 HOH WAT . 
E 4 HOH A 22 339 40 HOH WAT . 
E 4 HOH A 23 340 42 HOH WAT . 
E 4 HOH A 24 341 43 HOH WAT . 
E 4 HOH A 25 342 44 HOH WAT . 
E 4 HOH A 26 343 48 HOH WAT . 
E 4 HOH A 27 344 49 HOH WAT . 
E 4 HOH A 28 345 52 HOH WAT . 
E 4 HOH A 29 346 53 HOH WAT . 
E 4 HOH A 30 347 55 HOH WAT . 
E 4 HOH A 31 348 57 HOH WAT . 
E 4 HOH A 32 349 58 HOH WAT . 
E 4 HOH A 33 350 59 HOH WAT . 
E 4 HOH A 34 351 61 HOH WAT . 
E 4 HOH A 35 352 63 HOH WAT . 
E 4 HOH A 36 353 64 HOH WAT . 
E 4 HOH A 37 354 65 HOH WAT . 
E 4 HOH A 38 355 69 HOH WAT . 
E 4 HOH A 39 356 72 HOH WAT . 
E 4 HOH A 40 357 74 HOH WAT . 
E 4 HOH A 41 358 75 HOH WAT . 
E 4 HOH A 42 359 76 HOH WAT . 
E 4 HOH A 43 360 78 HOH WAT . 
E 4 HOH A 44 361 79 HOH WAT . 
E 4 HOH A 45 362 80 HOH WAT . 
E 4 HOH A 46 363 81 HOH WAT . 
E 4 HOH A 47 364 84 HOH WAT . 
E 4 HOH A 48 365 85 HOH WAT . 
E 4 HOH A 49 366 86 HOH WAT . 
E 4 HOH A 50 367 87 HOH WAT . 
E 4 HOH A 51 368 88 HOH WAT . 
E 4 HOH A 52 369 91 HOH WAT . 
E 4 HOH A 53 370 92 HOH WAT . 
E 4 HOH A 54 371 93 HOH WAT . 
E 4 HOH A 55 372 95 HOH WAT . 
E 4 HOH A 56 373 96 HOH WAT . 
E 4 HOH A 57 374 97 HOH WAT . 
E 4 HOH A 58 375 98 HOH WAT . 
E 4 HOH A 59 376 101 HOH WAT . 
E 4 HOH A 60 377 103 HOH WAT . 
E 4 HOH A 61 378 104 HOH WAT . 
E 4 HOH A 62 379 105 HOH WAT . 
E 4 HOH A 63 380 107 HOH WAT . 
E 4 HOH A 64 381 108 HOH WAT . 
E 4 HOH A 65 382 110 HOH WAT . 
E 4 HOH A 66 383 111 HOH WAT . 
E 4 HOH A 67 384 112 HOH WAT . 
E 4 HOH A 68 385 113 HOH WAT . 
E 4 HOH A 69 386 114 HOH WAT . 
E 4 HOH A 70 387 115 HOH WAT . 
E 4 HOH A 71 388 116 HOH WAT . 
E 4 HOH A 72 389 118 HOH WAT . 
E 4 HOH A 73 390 121 HOH WAT . 
E 4 HOH A 74 391 123 HOH WAT . 
F 4 HOH B 1 318 4 HOH WAT . 
F 4 HOH B 2 319 7 HOH WAT . 
F 4 HOH B 3 320 12 HOH WAT . 
F 4 HOH B 4 321 14 HOH WAT . 
F 4 HOH B 5 322 15 HOH WAT . 
F 4 HOH B 6 323 17 HOH WAT . 
F 4 HOH B 7 324 19 HOH WAT . 
F 4 HOH B 8 325 20 HOH WAT . 
F 4 HOH B 9 326 21 HOH WAT . 
F 4 HOH B 10 327 23 HOH WAT . 
F 4 HOH B 11 328 25 HOH WAT . 
F 4 HOH B 12 329 26 HOH WAT . 
F 4 HOH B 13 330 27 HOH WAT . 
F 4 HOH B 14 331 28 HOH WAT . 
F 4 HOH B 15 332 31 HOH WAT . 
F 4 HOH B 16 333 34 HOH WAT . 
F 4 HOH B 17 334 36 HOH WAT . 
F 4 HOH B 18 335 37 HOH WAT . 
F 4 HOH B 19 336 41 HOH WAT . 
F 4 HOH B 20 337 45 HOH WAT . 
F 4 HOH B 21 338 46 HOH WAT . 
F 4 HOH B 22 339 47 HOH WAT . 
F 4 HOH B 23 340 50 HOH WAT . 
F 4 HOH B 24 341 51 HOH WAT . 
F 4 HOH B 25 342 54 HOH WAT . 
F 4 HOH B 26 343 56 HOH WAT . 
F 4 HOH B 27 344 60 HOH WAT . 
F 4 HOH B 28 345 62 HOH WAT . 
F 4 HOH B 29 346 66 HOH WAT . 
F 4 HOH B 30 347 67 HOH WAT . 
F 4 HOH B 31 348 68 HOH WAT . 
F 4 HOH B 32 349 70 HOH WAT . 
F 4 HOH B 33 350 71 HOH WAT . 
F 4 HOH B 34 351 73 HOH WAT . 
F 4 HOH B 35 352 77 HOH WAT . 
F 4 HOH B 36 353 82 HOH WAT . 
F 4 HOH B 37 354 83 HOH WAT . 
F 4 HOH B 38 355 89 HOH WAT . 
F 4 HOH B 39 356 90 HOH WAT . 
F 4 HOH B 40 357 94 HOH WAT . 
F 4 HOH B 41 358 99 HOH WAT . 
F 4 HOH B 42 359 100 HOH WAT . 
F 4 HOH B 43 360 102 HOH WAT . 
F 4 HOH B 44 361 106 HOH WAT . 
F 4 HOH B 45 362 109 HOH WAT . 
F 4 HOH B 46 363 117 HOH WAT . 
F 4 HOH B 47 364 119 HOH WAT . 
F 4 HOH B 48 365 120 HOH WAT . 
F 4 HOH B 49 366 122 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 BGC . . . D 3 25.929 -0.584 8.43 1 86.95 ? C2 BGC 400 A 1 
HETATM 2 C C3 BGC . . . D 3 25.666 -2.074 8.572 1 85.99 ? C3 BGC 400 A 1 
HETATM 3 C C4 BGC . . . D 3 26.037 -2.758 7.265 1 86.38 ? C4 BGC 400 A 1 
HETATM 4 C C5 BGC . . . D 3 27.485 -2.449 6.922 1 86.96 ? C5 BGC 400 A 1 
HETATM 5 C C6 BGC . . . D 3 27.833 -3.063 5.565 1 87.2 ? C6 BGC 400 A 1 
HETATM 6 C C1 BGC . . . D 3 27.392 -0.38 8.073 1 88.1 ? C1 BGC 400 A 1 
HETATM 7 O O1 BGC . . . D 3 27.676 1.023 7.954 1 89.89 ? O1 BGC 400 A 1 
HETATM 8 O O2 BGC . . . D 3 25.641 0.076 9.671 1 85.91 ? O2 BGC 400 A 1 
HETATM 9 O O3 BGC . . . D 3 24.278 -2.3 8.851 1 84.1 ? O3 BGC 400 A 1 
HETATM 10 O O4 BGC . . . D 3 25.851 -4.175 7.394 1 84.26 ? O4 BGC 400 A 1 
HETATM 11 O O5 BGC . . . D 3 27.674 -1.028 6.824 1 87.88 ? O5 BGC 400 A 1 
HETATM 12 O O6 BGC . . . D 3 27.077 -2.418 4.537 1 87.76 ? O6 BGC 400 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           12 
#