data_3AMJ # _model_server_result.job_id URKETPDBkrs_GvUU5Axvhw _model_server_result.datetime_utc '2025-07-15 12:32:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3amj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 3AMJ # _exptl.entry_id 3AMJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3AMJ _cell.length_a 67.457 _cell.length_b 100.676 _cell.length_c 253.77 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AMJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,D,F,G,J 2 1 B,C,E,H,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E ZN ZN . C ZN 1 1_555 B NE2 HIS 51 C HIS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc2 E ZN ZN . C ZN 1 1_555 B NE2 HIS 55 C HIS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc3 E ZN ZN . C ZN 1 1_555 B OE2 GLU 131 C GLU 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc4 E ZN ZN . C ZN 1 1_555 B OE1 GLU 131 C GLU 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc5 F ZN ZN . A ZN 2 1_555 D NE2 HIS 51 A HIS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc6 F ZN ZN . A ZN 2 1_555 D NE2 HIS 55 A HIS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc7 F ZN ZN . A ZN 2 1_555 D OE1 GLU 131 A GLU 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc8 F ZN ZN . A ZN 2 1_555 D OE2 GLU 131 A GLU 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3AMJ _atom_sites.fract_transf_matrix[1][1] 0.014824 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009933 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003941 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN C 1 1 1 ZN ZN . F 3 ZN A 1 2 2 ZN ZN . G 4 HOH B 1 17 17 HOH HOH . G 4 HOH B 2 18 18 HOH HOH . G 4 HOH B 3 19 19 HOH HOH . G 4 HOH B 4 445 445 HOH HOH . G 4 HOH B 5 446 446 HOH HOH . G 4 HOH B 6 448 448 HOH HOH . G 4 HOH B 7 450 450 HOH HOH . G 4 HOH B 8 451 451 HOH HOH . G 4 HOH B 9 456 456 HOH HOH . G 4 HOH B 10 457 457 HOH HOH . G 4 HOH B 11 460 460 HOH HOH . G 4 HOH B 12 461 461 HOH HOH . G 4 HOH B 13 466 466 HOH HOH . G 4 HOH B 14 468 468 HOH HOH . G 4 HOH B 15 470 470 HOH HOH . G 4 HOH B 16 471 471 HOH HOH . H 4 HOH C 1 2 2 HOH HOH . H 4 HOH C 2 4 4 HOH HOH . H 4 HOH C 3 6 6 HOH HOH . H 4 HOH C 4 7 7 HOH HOH . H 4 HOH C 5 8 8 HOH HOH . H 4 HOH C 6 10 10 HOH HOH . H 4 HOH C 7 12 12 HOH HOH . H 4 HOH C 8 13 13 HOH HOH . H 4 HOH C 9 14 14 HOH HOH . H 4 HOH C 10 16 16 HOH HOH . H 4 HOH C 11 464 464 HOH HOH . H 4 HOH C 12 466 466 HOH HOH . H 4 HOH C 13 468 468 HOH HOH . H 4 HOH C 14 469 469 HOH HOH . H 4 HOH C 15 470 470 HOH HOH . I 4 HOH D 1 1 1 HOH HOH . I 4 HOH D 2 9 9 HOH HOH . I 4 HOH D 3 11 11 HOH HOH . I 4 HOH D 4 15 15 HOH HOH . I 4 HOH D 5 446 446 HOH HOH . I 4 HOH D 6 448 448 HOH HOH . I 4 HOH D 7 450 450 HOH HOH . I 4 HOH D 8 451 451 HOH HOH . I 4 HOH D 9 452 452 HOH HOH . J 4 HOH A 1 20 20 HOH HOH . J 4 HOH A 2 21 21 HOH HOH . J 4 HOH A 3 22 22 HOH HOH . J 4 HOH A 4 24 24 HOH HOH . J 4 HOH A 5 26 26 HOH HOH . J 4 HOH A 6 465 465 HOH HOH . J 4 HOH A 7 467 467 HOH HOH . J 4 HOH A 8 469 469 HOH HOH . J 4 HOH A 9 471 471 HOH HOH . J 4 HOH A 10 473 473 HOH HOH . J 4 HOH A 11 474 474 HOH HOH . J 4 HOH A 12 475 475 HOH HOH . J 4 HOH A 13 476 476 HOH HOH . J 4 HOH A 14 478 478 HOH HOH . J 4 HOH A 15 480 480 HOH HOH . J 4 HOH A 16 481 481 HOH HOH . J 4 HOH A 17 483 483 HOH HOH . J 4 HOH A 18 484 484 HOH HOH . J 4 HOH A 19 486 486 HOH HOH . J 4 HOH A 20 488 488 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -15.619 _atom_site.Cartn_y -14.248 _atom_site.Cartn_z 28.053 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.59 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #