data_3AMY
#
_model_server_result.job_id            3R8CgMp5tobWkdBlBJVzwA 
_model_server_result.datetime_utc      '2024-11-22 19:18:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3amy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":336}' 
#
_entry.id    3AMY 
#
_exptl.entry_id    3AMY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              270.237 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5,7-dihydroxy-2-(4-hydroxyphenyl)-4H-chromen-4-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3AMY 
_cell.length_a            48.63 
_cell.length_b            73.03 
_cell.length_c            77.39 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3AMY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C15 H10 O5' 
_chem_comp.formula_weight    270.237 
_chem_comp.id                AGI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5,7-dihydroxy-2-(4-hydroxyphenyl)-4H-chromen-4-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Apigenin 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAG CAE AGI doub 1 n y 
CAG CAP AGI sing 2 n y 
CAE CAM AGI sing 3 n y 
CAM OAB AGI sing 4 n n 
CAM CAF AGI doub 5 n y 
CAF CAH AGI sing 6 n y 
CAH CAP AGI doub 7 n y 
CAP CAQ AGI sing 8 n n 
CAQ OAL AGI sing 9 n n 
CAQ CAJ AGI doub 10 n n 
OAL CAS AGI sing 11 n n 
CAJ CAR AGI sing 12 n n 
CAR OAA AGI doub 13 n n 
CAR CAT AGI sing 14 n n 
CAT CAS AGI doub 15 n y 
CAT CAO AGI sing 16 n y 
CAS CAK AGI sing 17 n y 
CAK CAN AGI doub 18 n y 
CAN OAC AGI sing 19 n n 
CAN CAI AGI sing 20 n y 
CAI CAO AGI doub 21 n y 
CAO OAD AGI sing 22 n n 
CAG HAG AGI sing 23 n n 
CAE HAE AGI sing 24 n n 
OAB HOAB AGI sing 25 n n 
CAF HAF AGI sing 26 n n 
CAH HAH AGI sing 27 n n 
CAJ HAJ AGI sing 28 n n 
CAK HAK AGI sing 29 n n 
OAC HOAC AGI sing 30 n n 
CAI HAI AGI sing 31 n n 
OAD HOAD AGI sing 32 n n 
#
_atom_sites.entry_id                     3AMY 
_atom_sites.fract_transf_matrix[1][1]    0.020563 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013693 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012922 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 AGI A 1 336 1 AGI DRG . 
C 3 EDO A 1 337 1 EDO EDO . 
D 4 HOH A 1 338 1 HOH HOH . 
D 4 HOH A 2 339 2 HOH HOH . 
D 4 HOH A 3 340 3 HOH HOH . 
D 4 HOH A 4 341 4 HOH HOH . 
D 4 HOH A 5 342 5 HOH HOH . 
D 4 HOH A 6 343 6 HOH HOH . 
D 4 HOH A 7 344 7 HOH HOH . 
D 4 HOH A 8 345 8 HOH HOH . 
D 4 HOH A 9 346 9 HOH HOH . 
D 4 HOH A 10 347 10 HOH HOH . 
D 4 HOH A 11 348 11 HOH HOH . 
D 4 HOH A 12 349 12 HOH HOH . 
D 4 HOH A 13 350 13 HOH HOH . 
D 4 HOH A 14 351 14 HOH HOH . 
D 4 HOH A 15 352 15 HOH HOH . 
D 4 HOH A 16 353 16 HOH HOH . 
D 4 HOH A 17 354 17 HOH HOH . 
D 4 HOH A 18 355 18 HOH HOH . 
D 4 HOH A 19 356 19 HOH HOH . 
D 4 HOH A 20 357 20 HOH HOH . 
D 4 HOH A 21 358 21 HOH HOH . 
D 4 HOH A 22 359 22 HOH HOH . 
D 4 HOH A 23 360 23 HOH HOH . 
D 4 HOH A 24 361 24 HOH HOH . 
D 4 HOH A 25 362 25 HOH HOH . 
D 4 HOH A 26 363 26 HOH HOH . 
D 4 HOH A 27 364 27 HOH HOH . 
D 4 HOH A 28 365 28 HOH HOH . 
D 4 HOH A 29 366 29 HOH HOH . 
D 4 HOH A 30 367 30 HOH HOH . 
D 4 HOH A 31 368 31 HOH HOH . 
D 4 HOH A 32 369 32 HOH HOH . 
D 4 HOH A 33 370 33 HOH HOH . 
D 4 HOH A 34 371 34 HOH HOH . 
D 4 HOH A 35 372 35 HOH HOH . 
D 4 HOH A 36 373 36 HOH HOH . 
D 4 HOH A 37 374 37 HOH HOH . 
D 4 HOH A 38 375 38 HOH HOH . 
D 4 HOH A 39 376 39 HOH HOH . 
D 4 HOH A 40 377 40 HOH HOH . 
D 4 HOH A 41 378 41 HOH HOH . 
D 4 HOH A 42 379 42 HOH HOH . 
D 4 HOH A 43 380 43 HOH HOH . 
D 4 HOH A 44 381 44 HOH HOH . 
D 4 HOH A 45 382 45 HOH HOH . 
D 4 HOH A 46 383 46 HOH HOH . 
D 4 HOH A 47 384 47 HOH HOH . 
D 4 HOH A 48 385 48 HOH HOH . 
D 4 HOH A 49 386 49 HOH HOH . 
D 4 HOH A 50 387 50 HOH HOH . 
D 4 HOH A 51 388 51 HOH HOH . 
D 4 HOH A 52 389 52 HOH HOH . 
D 4 HOH A 53 390 53 HOH HOH . 
D 4 HOH A 54 391 54 HOH HOH . 
D 4 HOH A 55 392 55 HOH HOH . 
D 4 HOH A 56 393 56 HOH HOH . 
D 4 HOH A 57 394 57 HOH HOH . 
D 4 HOH A 58 395 58 HOH HOH . 
D 4 HOH A 59 396 59 HOH HOH . 
D 4 HOH A 60 397 60 HOH HOH . 
D 4 HOH A 61 398 61 HOH HOH . 
D 4 HOH A 62 399 62 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAG AGI . . . B 2 12.167 -4.84 11.632 1 39.68 ? CAG AGI 336 A 1 
HETATM 2 C CAE AGI . . . B 2 11.803 -3.857 12.544 1 39.54 ? CAE AGI 336 A 1 
HETATM 3 C CAM AGI . . . B 2 12.219 -2.547 12.346 1 39.56 ? CAM AGI 336 A 1 
HETATM 4 O OAB AGI . . . B 2 11.857 -1.592 13.254 1 39.39 ? OAB AGI 336 A 1 
HETATM 5 C CAF AGI . . . B 2 12.987 -2.229 11.222 1 39.47 ? CAF AGI 336 A 1 
HETATM 6 C CAH AGI . . . B 2 13.352 -3.213 10.297 1 39.61 ? CAH AGI 336 A 1 
HETATM 7 C CAP AGI . . . B 2 12.937 -4.531 10.509 1 39.67 ? CAP AGI 336 A 1 
HETATM 8 C CAQ AGI . . . B 2 13.241 -5.583 9.651 1 39.43 ? CAQ AGI 336 A 1 
HETATM 9 O OAL AGI . . . B 2 13.14 -6.83 10.193 1 39.17 ? OAL AGI 336 A 1 
HETATM 10 C CAJ AGI . . . B 2 13.577 -5.397 8.308 1 39.62 ? CAJ AGI 336 A 1 
HETATM 11 C CAR AGI . . . B 2 13.845 -6.506 7.503 1 39.75 ? CAR AGI 336 A 1 
HETATM 12 O OAA AGI . . . B 2 14.149 -6.339 6.32 1 39.65 ? OAA AGI 336 A 1 
HETATM 13 C CAT AGI . . . B 2 13.736 -7.79 8.05 1 39.49 ? CAT AGI 336 A 1 
HETATM 14 C CAS AGI . . . B 2 13.374 -7.907 9.397 1 39.27 ? CAS AGI 336 A 1 
HETATM 15 C CAK AGI . . . B 2 13.244 -9.156 9.985 1 39.27 ? CAK AGI 336 A 1 
HETATM 16 C CAN AGI . . . B 2 13.465 -10.299 9.235 1 39.35 ? CAN AGI 336 A 1 
HETATM 17 O OAC AGI . . . B 2 13.335 -11.499 9.839 1 39.87 ? OAC AGI 336 A 1 
HETATM 18 C CAI AGI . . . B 2 13.822 -10.211 7.891 1 39.24 ? CAI AGI 336 A 1 
HETATM 19 C CAO AGI . . . B 2 13.956 -8.957 7.291 1 39.6 ? CAO AGI 336 A 1 
HETATM 20 O OAD AGI . . . B 2 14.303 -8.901 5.97 1 39.24 ? OAD AGI 336 A 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           20 
#