data_3AN3 # _model_server_result.job_id rgDnXqrIWKUsOvU9rJW8cQ _model_server_result.datetime_utc '2025-01-11 11:39:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3an3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3AN3 # _exptl.entry_id 3AN3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 565.742 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-benzyl-3-(4-propoxy-3-{[({4-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]phenyl}carbonyl)amino]methyl}phenyl)propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.82 _cell.angle_gamma 90 _cell.entry_id 3AN3 _cell.length_a 93.192 _cell.length_b 61.061 _cell.length_c 118.618 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AN3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,C,D 2 1 B,E 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -46.596 30.5305 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C37 H43 N O4' _chem_comp.formula_weight 565.742 _chem_comp.id M7S _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-benzyl-3-(4-propoxy-3-{[({4-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]phenyl}carbonyl)amino]methyl}phenyl)propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 M7S doub 218 n n C1 C2 M7S sing 219 n n C1 O2 M7S sing 220 n n C2 C3 M7S sing 221 n n C2 C5 M7S sing 222 n n C3 C4 M7S sing 223 n n O3 C9 M7S sing 224 n n O3 C12 M7S sing 225 n n C4 C51 M7S doub 226 n y C4 C55 M7S sing 227 n y C5 C6 M7S sing 228 n n C6 C7 M7S doub 229 n y C6 C11 M7S sing 230 n y C7 C8 M7S sing 231 n y C8 C9 M7S doub 232 n y C8 C15 M7S sing 233 n n C9 C10 M7S sing 234 n y C10 C11 M7S doub 235 n y C12 C13 M7S sing 236 n n C13 C14 M7S sing 237 n n C15 N99 M7S sing 238 n n C17 C19 M7S doub 239 n y C17 C87 M7S sing 240 n y C19 C98 M7S sing 241 n y C22 C87 M7S doub 242 n y C22 C99 M7S sing 243 n y C23 C24 M7S sing 244 n n C23 C25 M7S sing 245 n n C23 C26 M7S sing 246 n n C23 C98 M7S sing 247 n n C24 C27 M7S sing 248 n n C25 C28 M7S sing 249 n n C26 C29 M7S sing 250 n n C27 C30 M7S sing 251 n n C27 C31 M7S sing 252 n n C28 C30 M7S sing 253 n n C28 C32 M7S sing 254 n n C29 C31 M7S sing 255 n n C29 C32 M7S sing 256 n n C51 C52 M7S sing 257 n y C52 C53 M7S doub 258 n y C53 C54 M7S sing 259 n y C54 C55 M7S doub 260 n y C87 C97 M7S sing 261 n n C97 N99 M7S sing 262 n n C97 O99 M7S doub 263 n n C98 C99 M7S doub 264 n y C2 H2 M7S sing 265 n n O2 HO2 M7S sing 266 n n C3 H3 M7S sing 267 n n C3 H3A M7S sing 268 n n C5 H5 M7S sing 269 n n C5 H5A M7S sing 270 n n C7 H7 M7S sing 271 n n C10 H10 M7S sing 272 n n C11 H11 M7S sing 273 n n C12 H12 M7S sing 274 n n C12 H12A M7S sing 275 n n C13 H13 M7S sing 276 n n C13 H13A M7S sing 277 n n C14 H14 M7S sing 278 n n C14 H14A M7S sing 279 n n C14 H14B M7S sing 280 n n C15 H15 M7S sing 281 n n C15 H15A M7S sing 282 n n C17 H17 M7S sing 283 n n C19 H19 M7S sing 284 n n C22 H22 M7S sing 285 n n C24 H24 M7S sing 286 n n C24 H24A M7S sing 287 n n C25 H25 M7S sing 288 n n C25 H25A M7S sing 289 n n C26 H26 M7S sing 290 n n C26 H26A M7S sing 291 n n C27 H27 M7S sing 292 n n C28 H28 M7S sing 293 n n C29 H29 M7S sing 294 n n C30 H30 M7S sing 295 n n C30 H30A M7S sing 296 n n C31 H31 M7S sing 297 n n C31 H31A M7S sing 298 n n C32 H32 M7S sing 299 n n C32 H32A M7S sing 300 n n C51 H51 M7S sing 301 n n C52 H52 M7S sing 302 n n C53 H53 M7S sing 303 n n C54 H54 M7S sing 304 n n C55 H55 M7S sing 305 n n C99 H99 M7S sing 306 n n N99 HN99 M7S sing 307 n n # _atom_sites.entry_id 3AN3 _atom_sites.fract_transf_matrix[1][1] 0.010731 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002442 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016377 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008646 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 M7S A 1 1 1 M7S M7S . D 3 HOH A 1 1001 1001 HOH HOH . D 3 HOH A 2 1005 1005 HOH HOH . D 3 HOH A 3 1011 1011 HOH HOH . D 3 HOH A 4 1015 1015 HOH HOH . D 3 HOH A 5 1017 1017 HOH HOH . D 3 HOH A 6 1018 1018 HOH HOH . D 3 HOH A 7 1019 1019 HOH HOH . D 3 HOH A 8 1023 1023 HOH HOH . D 3 HOH A 9 1025 1025 HOH HOH . D 3 HOH A 10 1030 1030 HOH HOH . D 3 HOH A 11 1035 1035 HOH HOH . D 3 HOH A 12 1036 1036 HOH HOH . D 3 HOH A 13 1063 1063 HOH HOH . D 3 HOH A 14 1065 1065 HOH HOH . D 3 HOH A 15 1066 1066 HOH HOH . D 3 HOH A 16 1069 1069 HOH HOH . D 3 HOH A 17 1071 1071 HOH HOH . D 3 HOH A 18 1075 1075 HOH HOH . D 3 HOH A 19 1077 1077 HOH HOH . D 3 HOH A 20 1080 1080 HOH HOH . D 3 HOH A 21 1083 1083 HOH HOH . D 3 HOH A 22 1085 1085 HOH HOH . D 3 HOH A 23 1086 1086 HOH HOH . D 3 HOH A 24 1090 1090 HOH HOH . D 3 HOH A 25 1091 1091 HOH HOH . D 3 HOH A 26 1093 1093 HOH HOH . D 3 HOH A 27 1094 1094 HOH HOH . D 3 HOH A 28 1096 1096 HOH HOH . D 3 HOH A 29 1097 1097 HOH HOH . D 3 HOH A 30 1100 1100 HOH HOH . D 3 HOH A 31 1101 1101 HOH HOH . D 3 HOH A 32 1103 1103 HOH HOH . D 3 HOH A 33 1105 1105 HOH HOH . D 3 HOH A 34 1108 1108 HOH HOH . D 3 HOH A 35 1111 1111 HOH HOH . D 3 HOH A 36 1114 1114 HOH HOH . D 3 HOH A 37 1120 1120 HOH HOH . D 3 HOH A 38 1121 1121 HOH HOH . D 3 HOH A 39 1123 1123 HOH HOH . D 3 HOH A 40 1130 1130 HOH HOH . D 3 HOH A 41 1131 1131 HOH HOH . D 3 HOH A 42 1133 1133 HOH HOH . D 3 HOH A 43 1139 1139 HOH HOH . D 3 HOH A 44 1142 1142 HOH HOH . D 3 HOH A 45 1144 1144 HOH HOH . D 3 HOH A 46 1149 1149 HOH HOH . D 3 HOH A 47 1150 1150 HOH HOH . D 3 HOH A 48 1151 1151 HOH HOH . D 3 HOH A 49 1152 1152 HOH HOH . D 3 HOH A 50 1154 1154 HOH HOH . D 3 HOH A 51 1158 1158 HOH HOH . D 3 HOH A 52 1161 1161 HOH HOH . D 3 HOH A 53 1174 1174 HOH HOH . D 3 HOH A 54 1175 1175 HOH HOH . D 3 HOH A 55 1177 1177 HOH HOH . D 3 HOH A 56 1178 1178 HOH HOH . D 3 HOH A 57 1179 1179 HOH HOH . D 3 HOH A 58 1181 1181 HOH HOH . D 3 HOH A 59 1183 1183 HOH HOH . D 3 HOH A 60 1186 1186 HOH HOH . D 3 HOH A 61 1187 1187 HOH HOH . D 3 HOH A 62 1188 1188 HOH HOH . D 3 HOH A 63 1189 1189 HOH HOH . D 3 HOH A 64 1193 1193 HOH HOH . D 3 HOH A 65 1194 1194 HOH HOH . D 3 HOH A 66 1196 1196 HOH HOH . D 3 HOH A 67 1198 1198 HOH HOH . D 3 HOH A 68 1206 1206 HOH HOH . D 3 HOH A 69 1207 1207 HOH HOH . D 3 HOH A 70 1210 1210 HOH HOH . D 3 HOH A 71 1212 1212 HOH HOH . D 3 HOH A 72 1213 1213 HOH HOH . E 3 HOH B 1 1003 1003 HOH HOH . E 3 HOH B 2 1004 1004 HOH HOH . E 3 HOH B 3 1006 1006 HOH HOH . E 3 HOH B 4 1026 1026 HOH HOH . E 3 HOH B 5 1028 1028 HOH HOH . E 3 HOH B 6 1033 1033 HOH HOH . E 3 HOH B 7 1037 1037 HOH HOH . E 3 HOH B 8 1051 1051 HOH HOH . E 3 HOH B 9 1062 1062 HOH HOH . E 3 HOH B 10 1064 1064 HOH HOH . E 3 HOH B 11 1067 1067 HOH HOH . E 3 HOH B 12 1068 1068 HOH HOH . E 3 HOH B 13 1070 1070 HOH HOH . E 3 HOH B 14 1072 1072 HOH HOH . E 3 HOH B 15 1073 1073 HOH HOH . E 3 HOH B 16 1074 1074 HOH HOH . E 3 HOH B 17 1076 1076 HOH HOH . E 3 HOH B 18 1078 1078 HOH HOH . E 3 HOH B 19 1081 1081 HOH HOH . E 3 HOH B 20 1082 1082 HOH HOH . E 3 HOH B 21 1084 1084 HOH HOH . E 3 HOH B 22 1092 1092 HOH HOH . E 3 HOH B 23 1102 1102 HOH HOH . E 3 HOH B 24 1106 1106 HOH HOH . E 3 HOH B 25 1107 1107 HOH HOH . E 3 HOH B 26 1109 1109 HOH HOH . E 3 HOH B 27 1110 1110 HOH HOH . E 3 HOH B 28 1112 1112 HOH HOH . E 3 HOH B 29 1113 1113 HOH HOH . E 3 HOH B 30 1115 1115 HOH HOH . E 3 HOH B 31 1116 1116 HOH HOH . E 3 HOH B 32 1117 1117 HOH HOH . E 3 HOH B 33 1127 1127 HOH HOH . E 3 HOH B 34 1128 1128 HOH HOH . E 3 HOH B 35 1129 1129 HOH HOH . E 3 HOH B 36 1132 1132 HOH HOH . E 3 HOH B 37 1135 1135 HOH HOH . E 3 HOH B 38 1136 1136 HOH HOH . E 3 HOH B 39 1137 1137 HOH HOH . E 3 HOH B 40 1138 1138 HOH HOH . E 3 HOH B 41 1140 1140 HOH HOH . E 3 HOH B 42 1143 1143 HOH HOH . E 3 HOH B 43 1147 1147 HOH HOH . E 3 HOH B 44 1156 1156 HOH HOH . E 3 HOH B 45 1157 1157 HOH HOH . E 3 HOH B 46 1159 1159 HOH HOH . E 3 HOH B 47 1167 1167 HOH HOH . E 3 HOH B 48 1168 1168 HOH HOH . E 3 HOH B 49 1169 1169 HOH HOH . E 3 HOH B 50 1170 1170 HOH HOH . E 3 HOH B 51 1173 1173 HOH HOH . E 3 HOH B 52 1182 1182 HOH HOH . E 3 HOH B 53 1184 1184 HOH HOH . E 3 HOH B 54 1185 1185 HOH HOH . E 3 HOH B 55 1197 1197 HOH HOH . E 3 HOH B 56 1201 1201 HOH HOH . E 3 HOH B 57 1202 1202 HOH HOH . E 3 HOH B 58 1205 1205 HOH HOH . E 3 HOH B 59 1208 1208 HOH HOH . E 3 HOH B 60 1209 1209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 M7S . . . C 2 18.115 66.511 18.218 1 72.55 ? C1 M7S 1 A 1 HETATM 2 O O1 M7S . . . C 2 18.716 65.469 18.477 1 75.86 ? O1 M7S 1 A 1 HETATM 3 C C2 M7S . . . C 2 18.107 67.186 16.979 1 70.91 ? C2 M7S 1 A 1 HETATM 4 O O2 M7S . . . C 2 17.397 67.151 19.159 1 72.01 ? O2 M7S 1 A 1 HETATM 5 C C3 M7S . . . C 2 19.516 67.838 16.684 1 69.55 ? C3 M7S 1 A 1 HETATM 6 O O3 M7S . . . C 2 17.662 67.239 10.154 1 66.17 ? O3 M7S 1 A 1 HETATM 7 C C4 M7S . . . C 2 20.041 68.895 17.7 1 69.93 ? C4 M7S 1 A 1 HETATM 8 C C5 M7S . . . C 2 17.651 66.111 15.931 1 68.61 ? C5 M7S 1 A 1 HETATM 9 C C6 M7S . . . C 2 17.564 66.442 14.452 1 68.05 ? C6 M7S 1 A 1 HETATM 10 C C7 M7S . . . C 2 16.333 66.942 13.767 1 67.38 ? C7 M7S 1 A 1 HETATM 11 C C8 M7S . . . C 2 16.38 67.215 12.281 1 67.48 ? C8 M7S 1 A 1 HETATM 12 C C9 M7S . . . C 2 17.615 66.986 11.542 1 66.55 ? C9 M7S 1 A 1 HETATM 13 C C10 M7S . . . C 2 18.781 66.499 12.266 1 66.47 ? C10 M7S 1 A 1 HETATM 14 C C11 M7S . . . C 2 18.766 66.231 13.671 1 67.01 ? C11 M7S 1 A 1 HETATM 15 C C12 M7S . . . C 2 18.886 67.88 9.758 1 66.47 ? C12 M7S 1 A 1 HETATM 16 C C13 M7S . . . C 2 18.908 68.141 8.297 1 68.7 ? C13 M7S 1 A 1 HETATM 17 C C14 M7S . . . C 2 19.391 69.548 8.107 1 70.86 ? C14 M7S 1 A 1 HETATM 18 C C15 M7S . . . C 2 15.203 67.71 11.547 1 69.44 ? C15 M7S 1 A 1 HETATM 19 C C17 M7S . . . C 2 14.101 71.793 8.901 1 69.12 ? C17 M7S 1 A 1 HETATM 20 C C19 M7S . . . C 2 14.581 73.08 8.379 1 69.04 ? C19 M7S 1 A 1 HETATM 21 C C22 M7S . . . C 2 16.495 71.134 9.414 1 67.36 ? C22 M7S 1 A 1 HETATM 22 C C23 M7S . . . C 2 16.575 74.791 7.805 1 70.77 ? C23 M7S 1 A 1 HETATM 23 C C24 M7S . . . C 2 17.565 74.543 6.581 1 70.95 ? C24 M7S 1 A 1 HETATM 24 C C25 M7S . . . C 2 17.374 75.59 8.931 1 70.91 ? C25 M7S 1 A 1 HETATM 25 C C26 M7S . . . C 2 15.382 75.739 7.289 1 72.04 ? C26 M7S 1 A 1 HETATM 26 C C27 M7S . . . C 2 18.117 75.921 6.014 1 71.62 ? C27 M7S 1 A 1 HETATM 27 C C28 M7S . . . C 2 17.924 76.969 8.377 1 71.03 ? C28 M7S 1 A 1 HETATM 28 C C29 M7S . . . C 2 15.939 77.11 6.738 1 72.01 ? C29 M7S 1 A 1 HETATM 29 C C30 M7S . . . C 2 18.892 76.69 7.157 1 70.82 ? C30 M7S 1 A 1 HETATM 30 C C31 M7S . . . C 2 16.915 76.814 5.526 1 71.72 ? C31 M7S 1 A 1 HETATM 31 C C32 M7S . . . C 2 16.723 77.856 7.895 1 71.8 ? C32 M7S 1 A 1 HETATM 32 C C51 M7S . . . C 2 21.438 69.132 17.881 1 71.66 ? C51 M7S 1 A 1 HETATM 33 C C52 M7S . . . C 2 21.926 70.098 18.828 1 72.75 ? C52 M7S 1 A 1 HETATM 34 C C53 M7S . . . C 2 21.018 70.862 19.633 1 70.98 ? C53 M7S 1 A 1 HETATM 35 C C54 M7S . . . C 2 19.59 70.659 19.485 1 70.29 ? C54 M7S 1 A 1 HETATM 36 C C55 M7S . . . C 2 19.108 69.682 18.524 1 69.46 ? C55 M7S 1 A 1 HETATM 37 C C87 M7S . . . C 2 15.064 70.806 9.425 1 68.42 ? C87 M7S 1 A 1 HETATM 38 C C97 M7S . . . C 2 14.611 69.564 9.923 1 69.05 ? C97 M7S 1 A 1 HETATM 39 C C98 M7S . . . C 2 16.034 73.417 8.364 1 69.78 ? C98 M7S 1 A 1 HETATM 40 C C99 M7S . . . C 2 16.98 72.408 8.896 1 68.15 ? C99 M7S 1 A 1 HETATM 41 N N99 M7S . . . C 2 15.473 69.003 10.891 1 69.09 ? N99 M7S 1 A 1 HETATM 42 O O99 M7S . . . C 2 13.544 69.034 9.523 1 67.99 ? O99 M7S 1 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 42 #