data_3AN4 # _model_server_result.job_id Ydrl6yl38klA6U2NQ6yisw _model_server_result.datetime_utc '2024-11-04 20:08:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3an4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3AN4 # _exptl.entry_id 3AN4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 565.742 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-benzyl-3-(4-propoxy-3-{[({4-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]phenyl}carbonyl)amino]methyl}phenyl)propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.82 _cell.angle_gamma 90 _cell.entry_id 3AN4 _cell.length_a 93.391 _cell.length_b 61.271 _cell.length_c 118.871 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AN4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,C,D 2 1 B,E 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -46.6955 30.6355 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C37 H43 N O4' _chem_comp.formula_weight 565.742 _chem_comp.id M7R _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-benzyl-3-(4-propoxy-3-{[({4-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]phenyl}carbonyl)amino]methyl}phenyl)propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 M7R doub 218 n n C1 C2 M7R sing 219 n n C1 O2 M7R sing 220 n n C2 C3 M7R sing 221 n n C2 C5 M7R sing 222 n n C3 C4 M7R sing 223 n n O3 C9 M7R sing 224 n n O3 C12 M7R sing 225 n n C4 C51 M7R doub 226 n y C4 C55 M7R sing 227 n y C5 C6 M7R sing 228 n n C6 C7 M7R doub 229 n y C6 C11 M7R sing 230 n y C7 C8 M7R sing 231 n y C8 C9 M7R doub 232 n y C8 C15 M7R sing 233 n n C9 C10 M7R sing 234 n y C10 C11 M7R doub 235 n y C12 C13 M7R sing 236 n n C13 C14 M7R sing 237 n n C15 N99 M7R sing 238 n n C17 C19 M7R doub 239 n y C17 C87 M7R sing 240 n y C19 C98 M7R sing 241 n y C22 C87 M7R doub 242 n y C22 C99 M7R sing 243 n y C23 C24 M7R sing 244 n n C23 C25 M7R sing 245 n n C23 C26 M7R sing 246 n n C23 C98 M7R sing 247 n n C24 C27 M7R sing 248 n n C25 C28 M7R sing 249 n n C26 C29 M7R sing 250 n n C27 C30 M7R sing 251 n n C27 C31 M7R sing 252 n n C28 C30 M7R sing 253 n n C28 C32 M7R sing 254 n n C29 C31 M7R sing 255 n n C29 C32 M7R sing 256 n n C51 C52 M7R sing 257 n y C52 C53 M7R doub 258 n y C53 C54 M7R sing 259 n y C54 C55 M7R doub 260 n y C87 C97 M7R sing 261 n n C97 N99 M7R sing 262 n n C97 O99 M7R doub 263 n n C98 C99 M7R doub 264 n y C2 H2 M7R sing 265 n n O2 HO2 M7R sing 266 n n C3 H3 M7R sing 267 n n C3 H3A M7R sing 268 n n C5 H5 M7R sing 269 n n C5 H5A M7R sing 270 n n C7 H7 M7R sing 271 n n C10 H10 M7R sing 272 n n C11 H11 M7R sing 273 n n C12 H12 M7R sing 274 n n C12 H12A M7R sing 275 n n C13 H13 M7R sing 276 n n C13 H13A M7R sing 277 n n C14 H14 M7R sing 278 n n C14 H14A M7R sing 279 n n C14 H14B M7R sing 280 n n C15 H15 M7R sing 281 n n C15 H15A M7R sing 282 n n C17 H17 M7R sing 283 n n C19 H19 M7R sing 284 n n C22 H22 M7R sing 285 n n C24 H24 M7R sing 286 n n C24 H24A M7R sing 287 n n C25 H25 M7R sing 288 n n C25 H25A M7R sing 289 n n C26 H26 M7R sing 290 n n C26 H26A M7R sing 291 n n C27 H27 M7R sing 292 n n C28 H28 M7R sing 293 n n C29 H29 M7R sing 294 n n C30 H30 M7R sing 295 n n C30 H30A M7R sing 296 n n C31 H31 M7R sing 297 n n C31 H31A M7R sing 298 n n C32 H32 M7R sing 299 n n C32 H32A M7R sing 300 n n C51 H51 M7R sing 301 n n C52 H52 M7R sing 302 n n C53 H53 M7R sing 303 n n C54 H54 M7R sing 304 n n C55 H55 M7R sing 305 n n C99 H99 M7R sing 306 n n N99 HN99 M7R sing 307 n n # _atom_sites.entry_id 3AN4 _atom_sites.fract_transf_matrix[1][1] 0.010708 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002437 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016321 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 M7R A 1 1 1 M7R M7R . D 3 HOH A 1 1001 1001 HOH HOH . D 3 HOH A 2 1011 1011 HOH HOH . D 3 HOH A 3 1015 1015 HOH HOH . D 3 HOH A 4 1017 1017 HOH HOH . D 3 HOH A 5 1019 1019 HOH HOH . D 3 HOH A 6 1023 1023 HOH HOH . D 3 HOH A 7 1035 1035 HOH HOH . D 3 HOH A 8 1036 1036 HOH HOH . D 3 HOH A 9 1063 1063 HOH HOH . D 3 HOH A 10 1065 1065 HOH HOH . D 3 HOH A 11 1066 1066 HOH HOH . D 3 HOH A 12 1069 1069 HOH HOH . D 3 HOH A 13 1075 1075 HOH HOH . D 3 HOH A 14 1077 1077 HOH HOH . D 3 HOH A 15 1080 1080 HOH HOH . D 3 HOH A 16 1083 1083 HOH HOH . D 3 HOH A 17 1086 1086 HOH HOH . D 3 HOH A 18 1091 1091 HOH HOH . D 3 HOH A 19 1093 1093 HOH HOH . D 3 HOH A 20 1094 1094 HOH HOH . D 3 HOH A 21 1101 1101 HOH HOH . D 3 HOH A 22 1105 1105 HOH HOH . D 3 HOH A 23 1111 1111 HOH HOH . D 3 HOH A 24 1114 1114 HOH HOH . D 3 HOH A 25 1123 1123 HOH HOH . D 3 HOH A 26 1127 1127 HOH HOH . D 3 HOH A 27 1128 1128 HOH HOH . D 3 HOH A 28 1133 1133 HOH HOH . D 3 HOH A 29 1140 1140 HOH HOH . D 3 HOH A 30 1149 1149 HOH HOH . D 3 HOH A 31 1151 1151 HOH HOH . D 3 HOH A 32 1152 1152 HOH HOH . D 3 HOH A 33 1155 1155 HOH HOH . D 3 HOH A 34 1166 1166 HOH HOH . D 3 HOH A 35 1196 1196 HOH HOH . D 3 HOH A 36 1203 1203 HOH HOH . D 3 HOH A 37 1210 1210 HOH HOH . D 3 HOH A 38 1230 1230 HOH HOH . D 3 HOH A 39 1245 1245 HOH HOH . D 3 HOH A 40 1246 1246 HOH HOH . D 3 HOH A 41 1249 1249 HOH HOH . E 3 HOH B 1 1003 1003 HOH HOH . E 3 HOH B 2 1004 1004 HOH HOH . E 3 HOH B 3 1006 1006 HOH HOH . E 3 HOH B 4 1026 1026 HOH HOH . E 3 HOH B 5 1028 1028 HOH HOH . E 3 HOH B 6 1037 1037 HOH HOH . E 3 HOH B 7 1051 1051 HOH HOH . E 3 HOH B 8 1064 1064 HOH HOH . E 3 HOH B 9 1067 1067 HOH HOH . E 3 HOH B 10 1068 1068 HOH HOH . E 3 HOH B 11 1070 1070 HOH HOH . E 3 HOH B 12 1072 1072 HOH HOH . E 3 HOH B 13 1073 1073 HOH HOH . E 3 HOH B 14 1074 1074 HOH HOH . E 3 HOH B 15 1078 1078 HOH HOH . E 3 HOH B 16 1081 1081 HOH HOH . E 3 HOH B 17 1084 1084 HOH HOH . E 3 HOH B 18 1092 1092 HOH HOH . E 3 HOH B 19 1102 1102 HOH HOH . E 3 HOH B 20 1106 1106 HOH HOH . E 3 HOH B 21 1110 1110 HOH HOH . E 3 HOH B 22 1112 1112 HOH HOH . E 3 HOH B 23 1116 1116 HOH HOH . E 3 HOH B 24 1117 1117 HOH HOH . E 3 HOH B 25 1125 1125 HOH HOH . E 3 HOH B 26 1142 1142 HOH HOH . E 3 HOH B 27 1177 1177 HOH HOH . E 3 HOH B 28 1178 1178 HOH HOH . E 3 HOH B 29 1180 1180 HOH HOH . E 3 HOH B 30 1184 1184 HOH HOH . E 3 HOH B 31 1189 1189 HOH HOH . E 3 HOH B 32 1205 1205 HOH HOH . E 3 HOH B 33 1208 1208 HOH HOH . E 3 HOH B 34 1209 1209 HOH HOH . E 3 HOH B 35 1214 1214 HOH HOH . E 3 HOH B 36 1215 1215 HOH HOH . E 3 HOH B 37 1219 1219 HOH HOH . E 3 HOH B 38 1220 1220 HOH HOH . E 3 HOH B 39 1225 1225 HOH HOH . E 3 HOH B 40 1239 1239 HOH HOH . E 3 HOH B 41 1248 1248 HOH HOH . E 3 HOH B 42 1255 1255 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 M7R . . . C 2 18.049 66.523 18.575 1 66.35 ? C1 M7R 1 A 1 HETATM 2 O O1 M7R . . . C 2 17.937 65.334 18.841 1 70.18 ? O1 M7R 1 A 1 HETATM 3 C C2 M7R . . . C 2 18.32 67.05 17.268 1 64.74 ? C2 M7R 1 A 1 HETATM 4 O O2 M7R . . . C 2 17.908 67.441 19.567 1 63.78 ? O2 M7R 1 A 1 HETATM 5 C C3 M7R . . . C 2 18.425 68.605 17.17 1 65.86 ? C3 M7R 1 A 1 HETATM 6 O O3 M7R . . . C 2 17.742 66.797 10.62 1 58.49 ? O3 M7R 1 A 1 HETATM 7 C C4 M7R . . . C 2 19.564 69.263 17.953 1 66.49 ? C4 M7R 1 A 1 HETATM 8 C C5 M7R . . . C 2 17.147 66.518 16.43 1 63.04 ? C5 M7R 1 A 1 HETATM 9 C C6 M7R . . . C 2 17.346 66.582 14.94 1 61.01 ? C6 M7R 1 A 1 HETATM 10 C C7 M7R . . . C 2 16.245 67.053 14.11 1 60.15 ? C7 M7R 1 A 1 HETATM 11 C C8 M7R . . . C 2 16.382 67.125 12.664 1 59.64 ? C8 M7R 1 A 1 HETATM 12 C C9 M7R . . . C 2 17.632 66.724 12.027 1 58.98 ? C9 M7R 1 A 1 HETATM 13 C C10 M7R . . . C 2 18.739 66.251 12.873 1 59.06 ? C10 M7R 1 A 1 HETATM 14 C C11 M7R . . . C 2 18.601 66.178 14.314 1 60.22 ? C11 M7R 1 A 1 HETATM 15 C C12 M7R . . . C 2 19.042 67.175 10.161 1 58.96 ? C12 M7R 1 A 1 HETATM 16 C C13 M7R . . . C 2 18.926 67.732 8.773 1 60.47 ? C13 M7R 1 A 1 HETATM 17 C C14 M7R . . . C 2 19.809 68.94 8.66 1 60.64 ? C14 M7R 1 A 1 HETATM 18 C C15 M7R . . . C 2 15.252 67.598 11.869 1 62.47 ? C15 M7R 1 A 1 HETATM 19 C C17 M7R . . . C 2 14.299 71.431 8.97 1 61.78 ? C17 M7R 1 A 1 HETATM 20 C C19 M7R . . . C 2 14.803 72.6 8.294 1 60.15 ? C19 M7R 1 A 1 HETATM 21 C C22 M7R . . . C 2 16.648 70.736 9.522 1 59.69 ? C22 M7R 1 A 1 HETATM 22 C C23 M7R . . . C 2 16.789 74.111 7.491 1 61.1 ? C23 M7R 1 A 1 HETATM 23 C C24 M7R . . . C 2 17.739 73.675 6.322 1 60.77 ? C24 M7R 1 A 1 HETATM 24 C C25 M7R . . . C 2 17.594 75.007 8.495 1 61.25 ? C25 M7R 1 A 1 HETATM 25 C C26 M7R . . . C 2 15.621 74.99 6.882 1 62.76 ? C26 M7R 1 A 1 HETATM 26 C C27 M7R . . . C 2 18.305 74.93 5.59 1 62.09 ? C27 M7R 1 A 1 HETATM 27 C C28 M7R . . . C 2 18.161 76.269 7.766 1 62.35 ? C28 M7R 1 A 1 HETATM 28 C C29 M7R . . . C 2 16.192 76.242 6.15 1 62.99 ? C29 M7R 1 A 1 HETATM 29 C C30 M7R . . . C 2 19.106 75.807 6.605 1 61.86 ? C30 M7R 1 A 1 HETATM 30 C C31 M7R . . . C 2 17.129 75.773 4.997 1 62.15 ? C31 M7R 1 A 1 HETATM 31 C C32 M7R . . . C 2 16.99 77.105 7.172 1 62.65 ? C32 M7R 1 A 1 HETATM 32 C C51 M7R . . . C 2 19.296 70.124 19.048 1 66.48 ? C51 M7R 1 A 1 HETATM 33 C C52 M7R . . . C 2 20.346 70.743 19.793 1 66.27 ? C52 M7R 1 A 1 HETATM 34 C C53 M7R . . . C 2 21.706 70.504 19.445 1 67.08 ? C53 M7R 1 A 1 HETATM 35 C C54 M7R . . . C 2 22.02 69.629 18.334 1 68.07 ? C54 M7R 1 A 1 HETATM 36 C C55 M7R . . . C 2 20.946 69.01 17.589 1 67.67 ? C55 M7R 1 A 1 HETATM 37 C C87 M7R . . . C 2 15.216 70.486 9.591 1 60.78 ? C87 M7R 1 A 1 HETATM 38 C C97 M7R . . . C 2 14.714 69.358 10.229 1 62.35 ? C97 M7R 1 A 1 HETATM 39 C C98 M7R . . . C 2 16.24 72.865 8.216 1 60.73 ? C98 M7R 1 A 1 HETATM 40 C C99 M7R . . . C 2 17.161 71.91 8.846 1 59.58 ? C99 M7R 1 A 1 HETATM 41 N N99 M7R . . . C 2 15.608 68.789 11.125 1 62.83 ? N99 M7R 1 A 1 HETATM 42 O O99 M7R . . . C 2 13.574 68.917 9.992 1 63.19 ? O99 M7R 1 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 42 #