data_3ANK # _model_server_result.job_id 5zXqxs638Es1MnwdEBXebw _model_server_result.datetime_utc '2024-11-27 11:42:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ank # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":404}' # _entry.id 3ANK # _exptl.entry_id 3ANK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.58 _cell.angle_gamma 90 _cell.entry_id 3ANK _cell.length_a 105.178 _cell.length_b 53.267 _cell.length_c 70.136 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ANK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -8.036912 0 69.674002 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GCD _pdbx_entity_branch_link.comp_id_2 NG6 _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O3 _pdbx_entity_branch_link.leaving_atom_id_2 HO3 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NG6 1 B 1 NG6 A 399 NG6 2 n B GCD 2 B 2 GCD A 400 GCD # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id O3 _struct_conn.ptnr1_label_comp_id NG6 _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id NG6 _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id GCD _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id GCD _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.42 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3ANK _atom_sites.fract_transf_matrix[1][1] 0.009508 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001097 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018773 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014353 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO A 1 3318 3318 EDO EDO . D 3 EDO A 1 401 401 EDO EDO . E 3 EDO A 1 402 402 EDO EDO . F 3 EDO A 1 403 403 EDO EDO . G 3 EDO A 1 404 404 EDO EDO . H 4 HOH A 1 405 405 HOH HOH . H 4 HOH A 2 406 406 HOH HOH . H 4 HOH A 3 407 407 HOH HOH . H 4 HOH A 4 408 408 HOH HOH . H 4 HOH A 5 409 409 HOH HOH . H 4 HOH A 6 410 410 HOH HOH . H 4 HOH A 7 411 411 HOH HOH . H 4 HOH A 8 412 412 HOH HOH . H 4 HOH A 9 413 413 HOH HOH . H 4 HOH A 10 414 414 HOH HOH . H 4 HOH A 11 415 415 HOH HOH . H 4 HOH A 12 416 416 HOH HOH . H 4 HOH A 13 417 417 HOH HOH . H 4 HOH A 14 418 418 HOH HOH . H 4 HOH A 15 419 419 HOH HOH . H 4 HOH A 16 420 420 HOH HOH . H 4 HOH A 17 421 421 HOH HOH . H 4 HOH A 18 422 422 HOH HOH . H 4 HOH A 19 423 423 HOH HOH . H 4 HOH A 20 424 424 HOH HOH . H 4 HOH A 21 425 425 HOH HOH . H 4 HOH A 22 426 426 HOH HOH . H 4 HOH A 23 427 427 HOH HOH . H 4 HOH A 24 428 428 HOH HOH . H 4 HOH A 25 429 429 HOH HOH . H 4 HOH A 26 430 430 HOH HOH . H 4 HOH A 27 431 431 HOH HOH . H 4 HOH A 28 432 432 HOH HOH . H 4 HOH A 29 433 433 HOH HOH . H 4 HOH A 30 434 434 HOH HOH . H 4 HOH A 31 435 435 HOH HOH . H 4 HOH A 32 436 436 HOH HOH . H 4 HOH A 33 437 437 HOH HOH . H 4 HOH A 34 438 438 HOH HOH . H 4 HOH A 35 439 439 HOH HOH . H 4 HOH A 36 440 440 HOH HOH . H 4 HOH A 37 441 441 HOH HOH . H 4 HOH A 38 442 442 HOH HOH . H 4 HOH A 39 443 443 HOH HOH . H 4 HOH A 40 444 444 HOH HOH . H 4 HOH A 41 445 445 HOH HOH . H 4 HOH A 42 446 446 HOH HOH . H 4 HOH A 43 447 447 HOH HOH . H 4 HOH A 44 448 448 HOH HOH . H 4 HOH A 45 449 449 HOH HOH . H 4 HOH A 46 450 450 HOH HOH . H 4 HOH A 47 451 451 HOH HOH . H 4 HOH A 48 452 452 HOH HOH . H 4 HOH A 49 453 453 HOH HOH . H 4 HOH A 50 454 454 HOH HOH . H 4 HOH A 51 455 455 HOH HOH . H 4 HOH A 52 456 456 HOH HOH . H 4 HOH A 53 457 457 HOH HOH . H 4 HOH A 54 458 458 HOH HOH . H 4 HOH A 55 459 459 HOH HOH . H 4 HOH A 56 460 460 HOH HOH . H 4 HOH A 57 461 461 HOH HOH . H 4 HOH A 58 462 462 HOH HOH . H 4 HOH A 59 463 463 HOH HOH . H 4 HOH A 60 464 464 HOH HOH . H 4 HOH A 61 465 465 HOH HOH . H 4 HOH A 62 466 466 HOH HOH . H 4 HOH A 63 467 467 HOH HOH . H 4 HOH A 64 468 468 HOH HOH . H 4 HOH A 65 469 469 HOH HOH . H 4 HOH A 66 470 470 HOH HOH . H 4 HOH A 67 471 471 HOH HOH . H 4 HOH A 68 472 472 HOH HOH . H 4 HOH A 69 473 473 HOH HOH . H 4 HOH A 70 474 474 HOH HOH . H 4 HOH A 71 475 475 HOH HOH . H 4 HOH A 72 476 476 HOH HOH . H 4 HOH A 73 477 477 HOH HOH . H 4 HOH A 74 478 478 HOH HOH . H 4 HOH A 75 479 479 HOH HOH . H 4 HOH A 76 480 480 HOH HOH . H 4 HOH A 77 481 481 HOH HOH . H 4 HOH A 78 482 482 HOH HOH . H 4 HOH A 79 483 483 HOH HOH . H 4 HOH A 80 484 484 HOH HOH . H 4 HOH A 81 485 485 HOH HOH . H 4 HOH A 82 486 486 HOH HOH . H 4 HOH A 83 487 487 HOH HOH . H 4 HOH A 84 488 488 HOH HOH . H 4 HOH A 85 489 489 HOH HOH . H 4 HOH A 86 490 490 HOH HOH . H 4 HOH A 87 491 491 HOH HOH . H 4 HOH A 88 492 492 HOH HOH . H 4 HOH A 89 493 493 HOH HOH . H 4 HOH A 90 494 494 HOH HOH . H 4 HOH A 91 495 495 HOH HOH . H 4 HOH A 92 496 496 HOH HOH . H 4 HOH A 93 497 497 HOH HOH . H 4 HOH A 94 498 498 HOH HOH . H 4 HOH A 95 499 499 HOH HOH . H 4 HOH A 96 500 500 HOH HOH . H 4 HOH A 97 501 501 HOH HOH . H 4 HOH A 98 502 502 HOH HOH . H 4 HOH A 99 503 503 HOH HOH . H 4 HOH A 100 504 504 HOH HOH . H 4 HOH A 101 505 505 HOH HOH . H 4 HOH A 102 506 506 HOH HOH . H 4 HOH A 103 507 507 HOH HOH . H 4 HOH A 104 508 508 HOH HOH . H 4 HOH A 105 509 509 HOH HOH . H 4 HOH A 106 510 510 HOH HOH . H 4 HOH A 107 511 511 HOH HOH . H 4 HOH A 108 512 512 HOH HOH . H 4 HOH A 109 513 513 HOH HOH . H 4 HOH A 110 514 514 HOH HOH . H 4 HOH A 111 515 515 HOH HOH . H 4 HOH A 112 516 516 HOH HOH . H 4 HOH A 113 517 517 HOH HOH . H 4 HOH A 114 518 518 HOH HOH . H 4 HOH A 115 519 519 HOH HOH . H 4 HOH A 116 520 520 HOH HOH . H 4 HOH A 117 521 521 HOH HOH . H 4 HOH A 118 522 522 HOH HOH . H 4 HOH A 119 523 523 HOH HOH . H 4 HOH A 120 524 524 HOH HOH . H 4 HOH A 121 525 525 HOH HOH . H 4 HOH A 122 526 526 HOH HOH . H 4 HOH A 123 527 527 HOH HOH . H 4 HOH A 124 528 528 HOH HOH . H 4 HOH A 125 529 529 HOH HOH . H 4 HOH A 126 530 530 HOH HOH . H 4 HOH A 127 531 531 HOH HOH . H 4 HOH A 128 532 532 HOH HOH . H 4 HOH A 129 533 533 HOH HOH . H 4 HOH A 130 534 534 HOH HOH . H 4 HOH A 131 535 535 HOH HOH . H 4 HOH A 132 536 536 HOH HOH . H 4 HOH A 133 537 537 HOH HOH . H 4 HOH A 134 538 538 HOH HOH . H 4 HOH A 135 539 539 HOH HOH . H 4 HOH A 136 540 540 HOH HOH . H 4 HOH A 137 541 541 HOH HOH . H 4 HOH A 138 542 542 HOH HOH . H 4 HOH A 139 543 543 HOH HOH . H 4 HOH A 140 544 544 HOH HOH . H 4 HOH A 141 545 545 HOH HOH . H 4 HOH A 142 546 546 HOH HOH . H 4 HOH A 143 547 547 HOH HOH . H 4 HOH A 144 548 548 HOH HOH . H 4 HOH A 145 549 549 HOH HOH . H 4 HOH A 146 550 550 HOH HOH . H 4 HOH A 147 551 551 HOH HOH . H 4 HOH A 148 552 552 HOH HOH . H 4 HOH A 149 553 553 HOH HOH . H 4 HOH A 150 554 554 HOH HOH . H 4 HOH A 151 555 555 HOH HOH . H 4 HOH A 152 556 556 HOH HOH . H 4 HOH A 153 557 557 HOH HOH . H 4 HOH A 154 558 558 HOH HOH . H 4 HOH A 155 559 559 HOH HOH . H 4 HOH A 156 560 560 HOH HOH . H 4 HOH A 157 561 561 HOH HOH . H 4 HOH A 158 562 562 HOH HOH . H 4 HOH A 159 563 563 HOH HOH . H 4 HOH A 160 564 564 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 3 -1.773 6.164 -0.257 1 22.29 ? C1 EDO 404 A 1 HETATM 2 O O1 EDO . . . G 3 -2.024 7.287 0.592 1 18.18 ? O1 EDO 404 A 1 HETATM 3 C C2 EDO . . . G 3 -3.082 5.449 -0.595 1 24.32 ? C2 EDO 404 A 1 HETATM 4 O O2 EDO . . . G 3 -4.139 6.392 -0.826 1 25.82 ? O2 EDO 404 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 4 #