data_3ANV
#
_model_server_result.job_id            a1MIfxCWXikOPRq1vrb72g 
_model_server_result.datetime_utc      '2024-10-12 18:14:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3anv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    3ANV 
#
_exptl.entry_id    3ANV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3ANV 
_cell.length_a            104.712 
_cell.length_b            104.712 
_cell.length_c            81.879 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ANV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        89 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 104.712 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C4A PLP . A PLP 401 1_555 E NG 2RA . A 2RA 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? 
metalc ? metalc1 A NE2 HIS 347 A HIS 347 1_555 D ZN ZN . A ZN 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc2 A SG CYS 349 A CYS 349 1_555 D ZN ZN . A ZN 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc3 D ZN ZN . A ZN 451 1_555 F O HOH . A HOH 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc4 D ZN ZN . A ZN 451 1_555 F O HOH . A HOH 583 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc5 D ZN ZN . A ZN 451 1_555 F O HOH . A HOH 583 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.631 ? 
metalc ? metalc6 D ZN ZN . A ZN 451 1_555 F O HOH . A HOH 584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 274 n y 
N1 C6 PLP sing 275 n y 
C2 C2A PLP sing 276 n n 
C2 C3 PLP sing 277 n y 
C2A H2A1 PLP sing 278 n n 
C2A H2A2 PLP sing 279 n n 
C2A H2A3 PLP sing 280 n n 
C3 O3 PLP sing 281 n n 
C3 C4 PLP doub 282 n y 
O3 HO3 PLP sing 283 n n 
C4 C4A PLP sing 284 n n 
C4 C5 PLP sing 285 n y 
C4A O4A PLP doub 286 n n 
C4A H4A PLP sing 287 n n 
C5 C6 PLP doub 288 n y 
C5 C5A PLP sing 289 n n 
C6 H6 PLP sing 290 n n 
C5A O4P PLP sing 291 n n 
C5A H5A1 PLP sing 292 n n 
C5A H5A2 PLP sing 293 n n 
O4P P PLP sing 294 n n 
P O1P PLP doub 295 n n 
P O2P PLP sing 296 n n 
P O3P PLP sing 297 n n 
O2P HOP2 PLP sing 298 n n 
O3P HOP3 PLP sing 299 n n 
#
_atom_sites.entry_id                     3ANV 
_atom_sites.fract_transf_matrix[1][1]    0.00955 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00955 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012213 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PLP A 1 401 401 PLP PLP . 
C 3 CL A 1 450 450 CL CL . 
D 4 ZN A 1 451 451 ZN ZN . 
E 5 2RA A 1 455 455 2RA DRG . 
F 6 HOH A 1 501 501 HOH HOH . 
F 6 HOH A 2 502 502 HOH HOH . 
F 6 HOH A 3 503 503 HOH HOH . 
F 6 HOH A 4 504 504 HOH HOH . 
F 6 HOH A 5 505 505 HOH HOH . 
F 6 HOH A 6 506 506 HOH HOH . 
F 6 HOH A 7 507 507 HOH HOH . 
F 6 HOH A 8 508 508 HOH HOH . 
F 6 HOH A 9 509 509 HOH HOH . 
F 6 HOH A 10 510 510 HOH HOH . 
F 6 HOH A 11 511 511 HOH HOH . 
F 6 HOH A 12 512 512 HOH HOH . 
F 6 HOH A 13 513 513 HOH HOH . 
F 6 HOH A 14 514 514 HOH HOH . 
F 6 HOH A 15 515 515 HOH HOH . 
F 6 HOH A 16 516 516 HOH HOH . 
F 6 HOH A 17 517 517 HOH HOH . 
F 6 HOH A 18 518 518 HOH HOH . 
F 6 HOH A 19 519 519 HOH HOH . 
F 6 HOH A 20 520 520 HOH HOH . 
F 6 HOH A 21 521 521 HOH HOH . 
F 6 HOH A 22 522 522 HOH HOH . 
F 6 HOH A 23 523 523 HOH HOH . 
F 6 HOH A 24 524 524 HOH HOH . 
F 6 HOH A 25 525 525 HOH HOH . 
F 6 HOH A 26 526 526 HOH HOH . 
F 6 HOH A 27 527 527 HOH HOH . 
F 6 HOH A 28 528 528 HOH HOH . 
F 6 HOH A 29 529 529 HOH HOH . 
F 6 HOH A 30 530 530 HOH HOH . 
F 6 HOH A 31 531 531 HOH HOH . 
F 6 HOH A 32 532 532 HOH HOH . 
F 6 HOH A 33 533 533 HOH HOH . 
F 6 HOH A 34 534 534 HOH HOH . 
F 6 HOH A 35 535 535 HOH HOH . 
F 6 HOH A 36 536 536 HOH HOH . 
F 6 HOH A 37 537 537 HOH HOH . 
F 6 HOH A 38 538 538 HOH HOH . 
F 6 HOH A 39 539 539 HOH HOH . 
F 6 HOH A 40 540 540 HOH HOH . 
F 6 HOH A 41 541 541 HOH HOH . 
F 6 HOH A 42 542 542 HOH HOH . 
F 6 HOH A 43 543 543 HOH HOH . 
F 6 HOH A 44 544 544 HOH HOH . 
F 6 HOH A 45 545 545 HOH HOH . 
F 6 HOH A 46 546 546 HOH HOH . 
F 6 HOH A 47 547 547 HOH HOH . 
F 6 HOH A 48 548 548 HOH HOH . 
F 6 HOH A 49 549 549 HOH HOH . 
F 6 HOH A 50 550 550 HOH HOH . 
F 6 HOH A 51 551 551 HOH HOH . 
F 6 HOH A 52 552 552 HOH HOH . 
F 6 HOH A 53 553 553 HOH HOH . 
F 6 HOH A 54 554 554 HOH HOH . 
F 6 HOH A 55 555 555 HOH HOH . 
F 6 HOH A 56 556 556 HOH HOH . 
F 6 HOH A 57 557 557 HOH HOH . 
F 6 HOH A 58 558 558 HOH HOH . 
F 6 HOH A 59 559 559 HOH HOH . 
F 6 HOH A 60 560 560 HOH HOH . 
F 6 HOH A 61 561 561 HOH HOH . 
F 6 HOH A 62 562 562 HOH HOH . 
F 6 HOH A 63 563 563 HOH HOH . 
F 6 HOH A 64 564 564 HOH HOH . 
F 6 HOH A 65 565 565 HOH HOH . 
F 6 HOH A 66 566 566 HOH HOH . 
F 6 HOH A 67 567 567 HOH HOH . 
F 6 HOH A 68 568 568 HOH HOH . 
F 6 HOH A 69 569 569 HOH HOH . 
F 6 HOH A 70 570 570 HOH HOH . 
F 6 HOH A 71 571 571 HOH HOH . 
F 6 HOH A 72 572 572 HOH HOH . 
F 6 HOH A 73 573 573 HOH HOH . 
F 6 HOH A 74 574 574 HOH HOH . 
F 6 HOH A 75 575 575 HOH HOH . 
F 6 HOH A 76 576 576 HOH HOH . 
F 6 HOH A 77 577 577 HOH HOH . 
F 6 HOH A 78 578 578 HOH HOH . 
F 6 HOH A 79 579 579 HOH HOH . 
F 6 HOH A 80 580 580 HOH HOH . 
F 6 HOH A 81 581 581 HOH HOH . 
F 6 HOH A 82 582 582 HOH HOH . 
F 6 HOH A 83 583 583 HOH HOH . 
F 6 HOH A 84 584 584 HOH HOH . 
F 6 HOH A 85 585 585 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . B 2 -5.589 71.735 18.822 1 33.98 ? N1 PLP 401 A 1 
HETATM 2 C C2 PLP . . . B 2 -6.258 70.618 18.391 1 34.9 ? C2 PLP 401 A 1 
HETATM 3 C C2A PLP . . . B 2 -7.751 70.525 18.473 1 32.85 ? C2A PLP 401 A 1 
HETATM 4 C C3 PLP . . . B 2 -5.517 69.569 17.867 1 36.58 ? C3 PLP 401 A 1 
HETATM 5 O O3 PLP . . . B 2 -6.189 68.466 17.434 1 36.93 ? O3 PLP 401 A 1 
HETATM 6 C C4 PLP . . . B 2 -4.122 69.647 17.779 1 36.35 ? C4 PLP 401 A 1 
HETATM 7 C C4A PLP . . . B 2 -3.336 68.512 17.206 1 41.82 ? C4A PLP 401 A 1 
HETATM 8 C C5 PLP . . . B 2 -3.445 70.777 18.221 1 35.15 ? C5 PLP 401 A 1 
HETATM 9 C C6 PLP . . . B 2 -4.21 71.808 18.745 1 34.11 ? C6 PLP 401 A 1 
HETATM 10 C C5A PLP . . . B 2 -1.919 70.891 18.152 1 31.54 ? C5A PLP 401 A 1 
HETATM 11 O O4P PLP . . . B 2 -1.398 70.646 16.845 1 32.97 ? O4P PLP 401 A 1 
HETATM 12 P P PLP . . . B 2 0.091 70.093 16.508 1 30.16 ? P PLP 401 A 1 
HETATM 13 O O1P PLP . . . B 2 0.434 70.433 15.099 1 29.98 ? O1P PLP 401 A 1 
HETATM 14 O O2P PLP . . . B 2 0.157 68.624 16.717 1 33.88 ? O2P PLP 401 A 1 
HETATM 15 O O3P PLP . . . B 2 1.084 70.748 17.431 1 32.82 ? O3P PLP 401 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           15 
#