data_3ANX # _model_server_result.job_id 0Q9NBw_3h9JuZ1WkwjTrvw _model_server_result.datetime_utc '2024-11-05 00:33:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3anx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":315}' # _entry.id 3ANX # _exptl.entry_id 3ANX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 297.334 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-DEOXY-5'-METHYLTHIOADENOSINE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ANX _cell.length_a 88.04 _cell.length_b 88.04 _cell.length_c 191 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ANX _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+3/2 0 -1 0 -1 0 0 0 0 -1 88.04 88.04 286.5 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C11 H15 N5 O3 S' _chem_comp.formula_weight 297.334 _chem_comp.id MTA _chem_comp.mon_nstd_flag . _chem_comp.name "5'-DEOXY-5'-METHYLTHIOADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CS S5' MTA sing 224 n n CS HCS1 MTA sing 225 n n CS HCS2 MTA sing 226 n n CS HCS3 MTA sing 227 n n S5' C5' MTA sing 228 n n C5' C4' MTA sing 229 n n C5' "H5'1" MTA sing 230 n n C5' "H5'2" MTA sing 231 n n C4' O4' MTA sing 232 n n C4' C3' MTA sing 233 n n C4' H4' MTA sing 234 n n O4' C1' MTA sing 235 n n C2' O2' MTA sing 236 n n C2' C3' MTA sing 237 n n C2' C1' MTA sing 238 n n C2' H2' MTA sing 239 n n O2' HO2' MTA sing 240 n n C3' O3' MTA sing 241 n n C3' H3' MTA sing 242 n n O3' H3T MTA sing 243 n n C1' N9 MTA sing 244 n n C1' H1' MTA sing 245 n n N9 C8 MTA sing 246 n y N9 C4 MTA sing 247 n y C8 N7 MTA doub 248 n y C8 H8 MTA sing 249 n n N7 C5 MTA sing 250 n y C5 C6 MTA sing 251 n y C5 C4 MTA doub 252 n y C6 N6 MTA sing 253 n n C6 N1 MTA doub 254 n y N6 H61 MTA sing 255 n n N6 H62 MTA sing 256 n n N1 C2 MTA sing 257 n y C2 N3 MTA doub 258 n y C2 H2 MTA sing 259 n n N3 C4 MTA sing 260 n y # _atom_sites.entry_id 3ANX _atom_sites.fract_transf_matrix[1][1] 0.011358 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011358 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005236 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MTA A 1 315 315 MTA MTA . D 2 MTA B 1 315 315 MTA MTA . E 3 HOH A 1 316 316 HOH HOH . E 3 HOH A 2 317 317 HOH HOH . E 3 HOH A 3 318 318 HOH HOH . E 3 HOH A 4 319 319 HOH HOH . E 3 HOH A 5 320 320 HOH HOH . E 3 HOH A 6 321 321 HOH HOH . E 3 HOH A 7 322 322 HOH HOH . E 3 HOH A 8 323 323 HOH HOH . E 3 HOH A 9 324 324 HOH HOH . E 3 HOH A 10 325 325 HOH HOH . E 3 HOH A 11 326 326 HOH HOH . E 3 HOH A 12 327 327 HOH HOH . E 3 HOH A 13 328 328 HOH HOH . E 3 HOH A 14 329 329 HOH HOH . E 3 HOH A 15 330 330 HOH HOH . E 3 HOH A 16 331 331 HOH HOH . E 3 HOH A 17 332 332 HOH HOH . E 3 HOH A 18 333 333 HOH HOH . E 3 HOH A 19 334 334 HOH HOH . E 3 HOH A 20 335 335 HOH HOH . E 3 HOH A 21 336 336 HOH HOH . E 3 HOH A 22 337 337 HOH HOH . E 3 HOH A 23 338 338 HOH HOH . E 3 HOH A 24 339 339 HOH HOH . E 3 HOH A 25 340 340 HOH HOH . E 3 HOH A 26 341 341 HOH HOH . E 3 HOH A 27 342 342 HOH HOH . E 3 HOH A 28 343 343 HOH HOH . E 3 HOH A 29 344 344 HOH HOH . E 3 HOH A 30 345 345 HOH HOH . E 3 HOH A 31 346 346 HOH HOH . E 3 HOH A 32 347 347 HOH HOH . E 3 HOH A 33 348 348 HOH HOH . E 3 HOH A 34 349 349 HOH HOH . E 3 HOH A 35 350 350 HOH HOH . E 3 HOH A 36 351 351 HOH HOH . E 3 HOH A 37 352 352 HOH HOH . E 3 HOH A 38 353 353 HOH HOH . E 3 HOH A 39 354 354 HOH HOH . E 3 HOH A 40 355 355 HOH HOH . E 3 HOH A 41 356 356 HOH HOH . E 3 HOH A 42 357 357 HOH HOH . E 3 HOH A 43 358 358 HOH HOH . E 3 HOH A 44 359 359 HOH HOH . E 3 HOH A 45 360 360 HOH HOH . E 3 HOH A 46 361 361 HOH HOH . E 3 HOH A 47 362 362 HOH HOH . E 3 HOH A 48 363 363 HOH HOH . E 3 HOH A 49 364 364 HOH HOH . E 3 HOH A 50 365 365 HOH HOH . E 3 HOH A 51 366 366 HOH HOH . E 3 HOH A 52 367 367 HOH HOH . E 3 HOH A 53 368 368 HOH HOH . E 3 HOH A 54 369 369 HOH HOH . E 3 HOH A 55 370 370 HOH HOH . E 3 HOH A 56 371 371 HOH HOH . E 3 HOH A 57 372 372 HOH HOH . E 3 HOH A 58 373 373 HOH HOH . E 3 HOH A 59 374 374 HOH HOH . E 3 HOH A 60 375 375 HOH HOH . E 3 HOH A 61 376 376 HOH HOH . E 3 HOH A 62 377 377 HOH HOH . E 3 HOH A 63 378 378 HOH HOH . E 3 HOH A 64 379 379 HOH HOH . E 3 HOH A 65 380 380 HOH HOH . E 3 HOH A 66 381 381 HOH HOH . E 3 HOH A 67 382 382 HOH HOH . E 3 HOH A 68 383 383 HOH HOH . E 3 HOH A 69 384 384 HOH HOH . E 3 HOH A 70 385 385 HOH HOH . E 3 HOH A 71 386 386 HOH HOH . E 3 HOH A 72 387 387 HOH HOH . E 3 HOH A 73 388 388 HOH HOH . E 3 HOH A 74 389 389 HOH HOH . E 3 HOH A 75 390 390 HOH HOH . E 3 HOH A 76 391 391 HOH HOH . E 3 HOH A 77 392 392 HOH HOH . E 3 HOH A 78 393 393 HOH HOH . E 3 HOH A 79 394 394 HOH HOH . E 3 HOH A 80 395 395 HOH HOH . E 3 HOH A 81 396 396 HOH HOH . E 3 HOH A 82 397 397 HOH HOH . E 3 HOH A 83 398 398 HOH HOH . E 3 HOH A 84 399 399 HOH HOH . E 3 HOH A 85 400 400 HOH HOH . E 3 HOH A 86 401 401 HOH HOH . E 3 HOH A 87 402 402 HOH HOH . E 3 HOH A 88 403 403 HOH HOH . E 3 HOH A 89 404 404 HOH HOH . E 3 HOH A 90 405 405 HOH HOH . E 3 HOH A 91 406 406 HOH HOH . E 3 HOH A 92 407 407 HOH HOH . E 3 HOH A 93 408 408 HOH HOH . E 3 HOH A 94 409 409 HOH HOH . E 3 HOH A 95 410 410 HOH HOH . E 3 HOH A 96 411 411 HOH HOH . E 3 HOH A 97 412 412 HOH HOH . E 3 HOH A 98 413 413 HOH HOH . E 3 HOH A 99 414 414 HOH HOH . E 3 HOH A 100 415 415 HOH HOH . E 3 HOH A 101 416 416 HOH HOH . E 3 HOH A 102 417 417 HOH HOH . F 3 HOH B 1 316 316 HOH HOH . F 3 HOH B 2 317 317 HOH HOH . F 3 HOH B 3 318 318 HOH HOH . F 3 HOH B 4 319 319 HOH HOH . F 3 HOH B 5 320 320 HOH HOH . F 3 HOH B 6 321 321 HOH HOH . F 3 HOH B 7 322 322 HOH HOH . F 3 HOH B 8 323 323 HOH HOH . F 3 HOH B 9 324 324 HOH HOH . F 3 HOH B 10 325 325 HOH HOH . F 3 HOH B 11 326 326 HOH HOH . F 3 HOH B 12 327 327 HOH HOH . F 3 HOH B 13 328 328 HOH HOH . F 3 HOH B 14 329 329 HOH HOH . F 3 HOH B 15 330 330 HOH HOH . F 3 HOH B 16 331 331 HOH HOH . F 3 HOH B 17 332 332 HOH HOH . F 3 HOH B 18 333 333 HOH HOH . F 3 HOH B 19 334 334 HOH HOH . F 3 HOH B 20 335 335 HOH HOH . F 3 HOH B 21 336 336 HOH HOH . F 3 HOH B 22 337 337 HOH HOH . F 3 HOH B 23 338 338 HOH HOH . F 3 HOH B 24 339 339 HOH HOH . F 3 HOH B 25 340 340 HOH HOH . F 3 HOH B 26 341 341 HOH HOH . F 3 HOH B 27 342 342 HOH HOH . F 3 HOH B 28 343 343 HOH HOH . F 3 HOH B 29 344 344 HOH HOH . F 3 HOH B 30 345 345 HOH HOH . F 3 HOH B 31 346 346 HOH HOH . F 3 HOH B 32 347 347 HOH HOH . F 3 HOH B 33 348 348 HOH HOH . F 3 HOH B 34 349 349 HOH HOH . F 3 HOH B 35 350 350 HOH HOH . F 3 HOH B 36 351 351 HOH HOH . F 3 HOH B 37 352 352 HOH HOH . F 3 HOH B 38 353 353 HOH HOH . F 3 HOH B 39 354 354 HOH HOH . F 3 HOH B 40 355 355 HOH HOH . F 3 HOH B 41 356 356 HOH HOH . F 3 HOH B 42 357 357 HOH HOH . F 3 HOH B 43 358 358 HOH HOH . F 3 HOH B 44 359 359 HOH HOH . F 3 HOH B 45 360 360 HOH HOH . F 3 HOH B 46 361 361 HOH HOH . F 3 HOH B 47 362 362 HOH HOH . F 3 HOH B 48 363 363 HOH HOH . F 3 HOH B 49 364 364 HOH HOH . F 3 HOH B 50 365 365 HOH HOH . F 3 HOH B 51 366 366 HOH HOH . F 3 HOH B 52 367 367 HOH HOH . F 3 HOH B 53 368 368 HOH HOH . F 3 HOH B 54 369 369 HOH HOH . F 3 HOH B 55 370 370 HOH HOH . F 3 HOH B 56 371 371 HOH HOH . F 3 HOH B 57 372 372 HOH HOH . F 3 HOH B 58 373 373 HOH HOH . F 3 HOH B 59 374 374 HOH HOH . F 3 HOH B 60 375 375 HOH HOH . F 3 HOH B 61 376 376 HOH HOH . F 3 HOH B 62 377 377 HOH HOH . F 3 HOH B 63 378 378 HOH HOH . F 3 HOH B 64 379 379 HOH HOH . F 3 HOH B 65 380 380 HOH HOH . F 3 HOH B 66 381 381 HOH HOH . F 3 HOH B 67 382 382 HOH HOH . F 3 HOH B 68 383 383 HOH HOH . F 3 HOH B 69 384 384 HOH HOH . F 3 HOH B 70 385 385 HOH HOH . F 3 HOH B 71 386 386 HOH HOH . F 3 HOH B 72 387 387 HOH HOH . F 3 HOH B 73 388 388 HOH HOH . F 3 HOH B 74 389 389 HOH HOH . F 3 HOH B 75 390 390 HOH HOH . F 3 HOH B 76 391 391 HOH HOH . F 3 HOH B 77 392 392 HOH HOH . F 3 HOH B 78 393 393 HOH HOH . F 3 HOH B 79 394 394 HOH HOH . F 3 HOH B 80 395 395 HOH HOH . F 3 HOH B 81 396 396 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CS MTA . . . C 2 38.428 66.523 125.188 0 88.8 ? CS MTA 315 A 1 HETATM 2 S S5' MTA . . . C 2 37.999 66.318 123.428 0 89.55 ? S5' MTA 315 A 1 HETATM 3 C C5' MTA . . . C 2 38.365 67.56 123.01 1 55.84 ? C5' MTA 315 A 1 HETATM 4 C C4' MTA . . . C 2 38.99 68.989 123.082 1 56 ? C4' MTA 315 A 1 HETATM 5 O O4' MTA . . . C 2 38.167 70.099 122.635 1 52.1 ? O4' MTA 315 A 1 HETATM 6 C C2' MTA . . . C 2 38.491 70.506 124.911 1 52.22 ? C2' MTA 315 A 1 HETATM 7 O O2' MTA . . . C 2 39.298 71.447 125.615 1 49.91 ? O2' MTA 315 A 1 HETATM 8 C C3' MTA . . . C 2 39.395 69.374 124.491 1 54.16 ? C3' MTA 315 A 1 HETATM 9 O O3' MTA . . . C 2 40.686 69.937 124.344 1 54.29 ? O3' MTA 315 A 1 HETATM 10 C C1' MTA . . . C 2 38.029 71.157 123.611 1 50.1 ? C1' MTA 315 A 1 HETATM 11 N N9 MTA . . . C 2 36.707 71.968 123.681 1 49.74 ? N9 MTA 315 A 1 HETATM 12 C C8 MTA . . . C 2 35.671 71.82 124.549 1 48.36 ? C8 MTA 315 A 1 HETATM 13 N N7 MTA . . . C 2 34.678 72.738 124.298 1 48.25 ? N7 MTA 315 A 1 HETATM 14 C C5 MTA . . . C 2 35.025 73.517 123.276 1 45.95 ? C5 MTA 315 A 1 HETATM 15 C C6 MTA . . . C 2 34.445 74.67 122.521 1 50.12 ? C6 MTA 315 A 1 HETATM 16 N N6 MTA . . . C 2 33.229 75.21 122.831 1 50.69 ? N6 MTA 315 A 1 HETATM 17 N N1 MTA . . . C 2 35.15 75.216 121.489 1 48.85 ? N1 MTA 315 A 1 HETATM 18 C C2 MTA . . . C 2 36.349 74.726 121.199 1 48 ? C2 MTA 315 A 1 HETATM 19 N N3 MTA . . . C 2 36.915 73.694 121.846 1 47.38 ? N3 MTA 315 A 1 HETATM 20 C C4 MTA . . . C 2 36.339 73.025 122.875 1 47.5 ? C4 MTA 315 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #