data_3ANX
#
_model_server_result.job_id            8l-MxYyqU82sUygsOQSU1Q 
_model_server_result.datetime_utc      '2024-11-05 00:32:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3anx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":315}' 
#
_entry.id    3ANX 
#
_exptl.entry_id    3ANX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              297.334 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-DEOXY-5'-METHYLTHIOADENOSINE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3ANX 
_cell.length_a            88.04 
_cell.length_b            88.04 
_cell.length_c            191 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ANX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+3/2 0 -1 0 -1 0 0 0 0 -1 88.04 88.04 286.5 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C11 H15 N5 O3 S' 
_chem_comp.formula_weight    297.334 
_chem_comp.id                MTA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-DEOXY-5'-METHYLTHIOADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CS S5' MTA sing 224 n n 
CS HCS1 MTA sing 225 n n 
CS HCS2 MTA sing 226 n n 
CS HCS3 MTA sing 227 n n 
S5' C5' MTA sing 228 n n 
C5' C4' MTA sing 229 n n 
C5' "H5'1" MTA sing 230 n n 
C5' "H5'2" MTA sing 231 n n 
C4' O4' MTA sing 232 n n 
C4' C3' MTA sing 233 n n 
C4' H4' MTA sing 234 n n 
O4' C1' MTA sing 235 n n 
C2' O2' MTA sing 236 n n 
C2' C3' MTA sing 237 n n 
C2' C1' MTA sing 238 n n 
C2' H2' MTA sing 239 n n 
O2' HO2' MTA sing 240 n n 
C3' O3' MTA sing 241 n n 
C3' H3' MTA sing 242 n n 
O3' H3T MTA sing 243 n n 
C1' N9 MTA sing 244 n n 
C1' H1' MTA sing 245 n n 
N9 C8 MTA sing 246 n y 
N9 C4 MTA sing 247 n y 
C8 N7 MTA doub 248 n y 
C8 H8 MTA sing 249 n n 
N7 C5 MTA sing 250 n y 
C5 C6 MTA sing 251 n y 
C5 C4 MTA doub 252 n y 
C6 N6 MTA sing 253 n n 
C6 N1 MTA doub 254 n y 
N6 H61 MTA sing 255 n n 
N6 H62 MTA sing 256 n n 
N1 C2 MTA sing 257 n y 
C2 N3 MTA doub 258 n y 
C2 H2 MTA sing 259 n n 
N3 C4 MTA sing 260 n y 
#
_atom_sites.entry_id                     3ANX 
_atom_sites.fract_transf_matrix[1][1]    0.011358 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011358 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005236 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MTA A 1 315 315 MTA MTA . 
D 2 MTA B 1 315 315 MTA MTA . 
E 3 HOH A 1 316 316 HOH HOH . 
E 3 HOH A 2 317 317 HOH HOH . 
E 3 HOH A 3 318 318 HOH HOH . 
E 3 HOH A 4 319 319 HOH HOH . 
E 3 HOH A 5 320 320 HOH HOH . 
E 3 HOH A 6 321 321 HOH HOH . 
E 3 HOH A 7 322 322 HOH HOH . 
E 3 HOH A 8 323 323 HOH HOH . 
E 3 HOH A 9 324 324 HOH HOH . 
E 3 HOH A 10 325 325 HOH HOH . 
E 3 HOH A 11 326 326 HOH HOH . 
E 3 HOH A 12 327 327 HOH HOH . 
E 3 HOH A 13 328 328 HOH HOH . 
E 3 HOH A 14 329 329 HOH HOH . 
E 3 HOH A 15 330 330 HOH HOH . 
E 3 HOH A 16 331 331 HOH HOH . 
E 3 HOH A 17 332 332 HOH HOH . 
E 3 HOH A 18 333 333 HOH HOH . 
E 3 HOH A 19 334 334 HOH HOH . 
E 3 HOH A 20 335 335 HOH HOH . 
E 3 HOH A 21 336 336 HOH HOH . 
E 3 HOH A 22 337 337 HOH HOH . 
E 3 HOH A 23 338 338 HOH HOH . 
E 3 HOH A 24 339 339 HOH HOH . 
E 3 HOH A 25 340 340 HOH HOH . 
E 3 HOH A 26 341 341 HOH HOH . 
E 3 HOH A 27 342 342 HOH HOH . 
E 3 HOH A 28 343 343 HOH HOH . 
E 3 HOH A 29 344 344 HOH HOH . 
E 3 HOH A 30 345 345 HOH HOH . 
E 3 HOH A 31 346 346 HOH HOH . 
E 3 HOH A 32 347 347 HOH HOH . 
E 3 HOH A 33 348 348 HOH HOH . 
E 3 HOH A 34 349 349 HOH HOH . 
E 3 HOH A 35 350 350 HOH HOH . 
E 3 HOH A 36 351 351 HOH HOH . 
E 3 HOH A 37 352 352 HOH HOH . 
E 3 HOH A 38 353 353 HOH HOH . 
E 3 HOH A 39 354 354 HOH HOH . 
E 3 HOH A 40 355 355 HOH HOH . 
E 3 HOH A 41 356 356 HOH HOH . 
E 3 HOH A 42 357 357 HOH HOH . 
E 3 HOH A 43 358 358 HOH HOH . 
E 3 HOH A 44 359 359 HOH HOH . 
E 3 HOH A 45 360 360 HOH HOH . 
E 3 HOH A 46 361 361 HOH HOH . 
E 3 HOH A 47 362 362 HOH HOH . 
E 3 HOH A 48 363 363 HOH HOH . 
E 3 HOH A 49 364 364 HOH HOH . 
E 3 HOH A 50 365 365 HOH HOH . 
E 3 HOH A 51 366 366 HOH HOH . 
E 3 HOH A 52 367 367 HOH HOH . 
E 3 HOH A 53 368 368 HOH HOH . 
E 3 HOH A 54 369 369 HOH HOH . 
E 3 HOH A 55 370 370 HOH HOH . 
E 3 HOH A 56 371 371 HOH HOH . 
E 3 HOH A 57 372 372 HOH HOH . 
E 3 HOH A 58 373 373 HOH HOH . 
E 3 HOH A 59 374 374 HOH HOH . 
E 3 HOH A 60 375 375 HOH HOH . 
E 3 HOH A 61 376 376 HOH HOH . 
E 3 HOH A 62 377 377 HOH HOH . 
E 3 HOH A 63 378 378 HOH HOH . 
E 3 HOH A 64 379 379 HOH HOH . 
E 3 HOH A 65 380 380 HOH HOH . 
E 3 HOH A 66 381 381 HOH HOH . 
E 3 HOH A 67 382 382 HOH HOH . 
E 3 HOH A 68 383 383 HOH HOH . 
E 3 HOH A 69 384 384 HOH HOH . 
E 3 HOH A 70 385 385 HOH HOH . 
E 3 HOH A 71 386 386 HOH HOH . 
E 3 HOH A 72 387 387 HOH HOH . 
E 3 HOH A 73 388 388 HOH HOH . 
E 3 HOH A 74 389 389 HOH HOH . 
E 3 HOH A 75 390 390 HOH HOH . 
E 3 HOH A 76 391 391 HOH HOH . 
E 3 HOH A 77 392 392 HOH HOH . 
E 3 HOH A 78 393 393 HOH HOH . 
E 3 HOH A 79 394 394 HOH HOH . 
E 3 HOH A 80 395 395 HOH HOH . 
E 3 HOH A 81 396 396 HOH HOH . 
E 3 HOH A 82 397 397 HOH HOH . 
E 3 HOH A 83 398 398 HOH HOH . 
E 3 HOH A 84 399 399 HOH HOH . 
E 3 HOH A 85 400 400 HOH HOH . 
E 3 HOH A 86 401 401 HOH HOH . 
E 3 HOH A 87 402 402 HOH HOH . 
E 3 HOH A 88 403 403 HOH HOH . 
E 3 HOH A 89 404 404 HOH HOH . 
E 3 HOH A 90 405 405 HOH HOH . 
E 3 HOH A 91 406 406 HOH HOH . 
E 3 HOH A 92 407 407 HOH HOH . 
E 3 HOH A 93 408 408 HOH HOH . 
E 3 HOH A 94 409 409 HOH HOH . 
E 3 HOH A 95 410 410 HOH HOH . 
E 3 HOH A 96 411 411 HOH HOH . 
E 3 HOH A 97 412 412 HOH HOH . 
E 3 HOH A 98 413 413 HOH HOH . 
E 3 HOH A 99 414 414 HOH HOH . 
E 3 HOH A 100 415 415 HOH HOH . 
E 3 HOH A 101 416 416 HOH HOH . 
E 3 HOH A 102 417 417 HOH HOH . 
F 3 HOH B 1 316 316 HOH HOH . 
F 3 HOH B 2 317 317 HOH HOH . 
F 3 HOH B 3 318 318 HOH HOH . 
F 3 HOH B 4 319 319 HOH HOH . 
F 3 HOH B 5 320 320 HOH HOH . 
F 3 HOH B 6 321 321 HOH HOH . 
F 3 HOH B 7 322 322 HOH HOH . 
F 3 HOH B 8 323 323 HOH HOH . 
F 3 HOH B 9 324 324 HOH HOH . 
F 3 HOH B 10 325 325 HOH HOH . 
F 3 HOH B 11 326 326 HOH HOH . 
F 3 HOH B 12 327 327 HOH HOH . 
F 3 HOH B 13 328 328 HOH HOH . 
F 3 HOH B 14 329 329 HOH HOH . 
F 3 HOH B 15 330 330 HOH HOH . 
F 3 HOH B 16 331 331 HOH HOH . 
F 3 HOH B 17 332 332 HOH HOH . 
F 3 HOH B 18 333 333 HOH HOH . 
F 3 HOH B 19 334 334 HOH HOH . 
F 3 HOH B 20 335 335 HOH HOH . 
F 3 HOH B 21 336 336 HOH HOH . 
F 3 HOH B 22 337 337 HOH HOH . 
F 3 HOH B 23 338 338 HOH HOH . 
F 3 HOH B 24 339 339 HOH HOH . 
F 3 HOH B 25 340 340 HOH HOH . 
F 3 HOH B 26 341 341 HOH HOH . 
F 3 HOH B 27 342 342 HOH HOH . 
F 3 HOH B 28 343 343 HOH HOH . 
F 3 HOH B 29 344 344 HOH HOH . 
F 3 HOH B 30 345 345 HOH HOH . 
F 3 HOH B 31 346 346 HOH HOH . 
F 3 HOH B 32 347 347 HOH HOH . 
F 3 HOH B 33 348 348 HOH HOH . 
F 3 HOH B 34 349 349 HOH HOH . 
F 3 HOH B 35 350 350 HOH HOH . 
F 3 HOH B 36 351 351 HOH HOH . 
F 3 HOH B 37 352 352 HOH HOH . 
F 3 HOH B 38 353 353 HOH HOH . 
F 3 HOH B 39 354 354 HOH HOH . 
F 3 HOH B 40 355 355 HOH HOH . 
F 3 HOH B 41 356 356 HOH HOH . 
F 3 HOH B 42 357 357 HOH HOH . 
F 3 HOH B 43 358 358 HOH HOH . 
F 3 HOH B 44 359 359 HOH HOH . 
F 3 HOH B 45 360 360 HOH HOH . 
F 3 HOH B 46 361 361 HOH HOH . 
F 3 HOH B 47 362 362 HOH HOH . 
F 3 HOH B 48 363 363 HOH HOH . 
F 3 HOH B 49 364 364 HOH HOH . 
F 3 HOH B 50 365 365 HOH HOH . 
F 3 HOH B 51 366 366 HOH HOH . 
F 3 HOH B 52 367 367 HOH HOH . 
F 3 HOH B 53 368 368 HOH HOH . 
F 3 HOH B 54 369 369 HOH HOH . 
F 3 HOH B 55 370 370 HOH HOH . 
F 3 HOH B 56 371 371 HOH HOH . 
F 3 HOH B 57 372 372 HOH HOH . 
F 3 HOH B 58 373 373 HOH HOH . 
F 3 HOH B 59 374 374 HOH HOH . 
F 3 HOH B 60 375 375 HOH HOH . 
F 3 HOH B 61 376 376 HOH HOH . 
F 3 HOH B 62 377 377 HOH HOH . 
F 3 HOH B 63 378 378 HOH HOH . 
F 3 HOH B 64 379 379 HOH HOH . 
F 3 HOH B 65 380 380 HOH HOH . 
F 3 HOH B 66 381 381 HOH HOH . 
F 3 HOH B 67 382 382 HOH HOH . 
F 3 HOH B 68 383 383 HOH HOH . 
F 3 HOH B 69 384 384 HOH HOH . 
F 3 HOH B 70 385 385 HOH HOH . 
F 3 HOH B 71 386 386 HOH HOH . 
F 3 HOH B 72 387 387 HOH HOH . 
F 3 HOH B 73 388 388 HOH HOH . 
F 3 HOH B 74 389 389 HOH HOH . 
F 3 HOH B 75 390 390 HOH HOH . 
F 3 HOH B 76 391 391 HOH HOH . 
F 3 HOH B 77 392 392 HOH HOH . 
F 3 HOH B 78 393 393 HOH HOH . 
F 3 HOH B 79 394 394 HOH HOH . 
F 3 HOH B 80 395 395 HOH HOH . 
F 3 HOH B 81 396 396 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CS MTA . . . D 2 33.143 29.581 128.333 0 87.91 ? CS MTA 315 B 1 
HETATM 2 S S5' MTA . . . D 2 34.141 29.531 126.818 0 89.05 ? S5' MTA 315 B 1 
HETATM 3 C C5' MTA . . . D 2 34.583 28.449 127.199 1 63.12 ? C5' MTA 315 B 1 
HETATM 4 C C4' MTA . . . D 2 34.72 26.915 127.426 1 65.97 ? C4' MTA 315 B 1 
HETATM 5 O O4' MTA . . . D 2 35.972 26.202 127.114 1 66.25 ? O4' MTA 315 B 1 
HETATM 6 C C2' MTA . . . D 2 35.643 25.779 129.422 1 64.71 ? C2' MTA 315 B 1 
HETATM 7 O O2' MTA . . . D 2 35.398 24.691 130.326 1 60.01 ? O2' MTA 315 B 1 
HETATM 8 C C3' MTA . . . D 2 34.416 26.467 128.861 1 64.79 ? C3' MTA 315 B 1 
HETATM 9 O O3' MTA . . . D 2 33.489 25.389 128.737 1 62.59 ? O3' MTA 315 B 1 
HETATM 10 C C1' MTA . . . D 2 36.092 25.131 128.137 1 68.14 ? C1' MTA 315 B 1 
HETATM 11 N N9 MTA . . . D 2 37.414 24.39 128.305 1 71.36 ? N9 MTA 315 B 1 
HETATM 12 C C8 MTA . . . D 2 38.474 24.768 129.09 1 68.65 ? C8 MTA 315 B 1 
HETATM 13 N N7 MTA . . . D 2 39.498 23.88 128.949 1 67.37 ? N7 MTA 315 B 1 
HETATM 14 C C5 MTA . . . D 2 39.118 22.902 128.069 1 68.21 ? C5 MTA 315 B 1 
HETATM 15 C C6 MTA . . . D 2 39.735 21.663 127.445 1 67.41 ? C6 MTA 315 B 1 
HETATM 16 N N6 MTA . . . D 2 41.01 21.272 127.758 1 67.29 ? N6 MTA 315 B 1 
HETATM 17 N N1 MTA . . . D 2 38.986 20.925 126.576 1 64.71 ? N1 MTA 315 B 1 
HETATM 18 C C2 MTA . . . D 2 37.734 21.312 126.241 1 67.45 ? C2 MTA 315 B 1 
HETATM 19 N N3 MTA . . . D 2 37.121 22.415 126.747 1 68.95 ? N3 MTA 315 B 1 
HETATM 20 C C4 MTA . . . D 2 37.738 23.235 127.657 1 68.82 ? C4 MTA 315 B 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#