data_3AO3 # _model_server_result.job_id 1Lw-joWRg096w-0MafbQQw _model_server_result.datetime_utc '2024-10-12 12:27:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ao3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1}' # _entry.id 3AO3 # _exptl.entry_id 3AO3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 246.219 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-(1,3-benzodioxol-5-yl)-1-methyl-1H-pyrazole-5-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3AO3 _cell.length_a 49 _cell.length_b 49 _cell.length_c 103.6 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AO3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 Q O HOH . A HOH 3 1_555 D CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc2 Q O HOH . A HOH 13 1_555 D CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc3 A SG CYS 16 A CYS 65 1_555 C CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc4 A SG CYS 16 A CYS 65 1_555 D CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc5 A NE2 HIS 18 A HIS 67 1_555 C CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc6 A OE1 GLU 43 A GLU 92 1_555 C CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc7 A OE2 GLU 43 A GLU 92 1_555 D CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc8 A OD2 ASP 67 A ASP 116 1_555 D CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc9 R O HOH . B HOH 8 1_555 K CD CD . B CD 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc10 R O HOH . B HOH 20 1_555 K CD CD . B CD 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc11 B SG CYS 16 B CYS 65 1_555 J CD CD . B CD 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc12 B SG CYS 16 B CYS 65 1_555 K CD CD . B CD 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc13 B NE2 HIS 18 B HIS 67 1_555 J CD CD . B CD 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc14 B OE1 GLU 43 B GLU 92 1_555 J CD CD . B CD 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? metalc ? metalc15 B OE2 GLU 43 B GLU 92 1_555 K CD CD . B CD 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc16 B OD2 ASP 67 B ASP 116 1_555 K CD CD . B CD 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? # _chem_comp.formula 'C12 H10 N2 O4' _chem_comp.formula_weight 246.219 _chem_comp.id BMC _chem_comp.mon_nstd_flag . _chem_comp.name '3-(1,3-benzodioxol-5-yl)-1-methyl-1H-pyrazole-5-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BMC doub 70 n y C1 C6 BMC sing 71 n y C2 C3 BMC sing 72 n y C2 C10 BMC sing 73 n y C3 C4 BMC doub 74 n y C4 C5 BMC sing 75 n y C5 C6 BMC doub 76 n y C5 O9 BMC sing 77 n n C6 O7 BMC sing 78 n n O7 C8 BMC sing 79 n n C8 O9 BMC sing 80 n n C10 C11 BMC sing 81 n y C10 N14 BMC doub 82 n y C11 C12 BMC doub 83 n y C12 N13 BMC sing 84 n y C12 C15 BMC sing 85 n n N13 N14 BMC sing 86 n y N13 C18 BMC sing 87 n n C15 O16 BMC sing 88 n n C15 O17 BMC doub 89 n n C1 H1 BMC sing 90 n n C3 H3 BMC sing 91 n n C4 H4 BMC sing 92 n n C8 H8 BMC sing 93 n n C8 H8A BMC sing 94 n n C11 H11 BMC sing 95 n n O16 H16 BMC sing 96 n n C18 H18 BMC sing 97 n n C18 H18A BMC sing 98 n n C18 H18B BMC sing 99 n n # _atom_sites.entry_id 3AO3 _atom_sites.fract_transf_matrix[1][1] 0.020408 _atom_sites.fract_transf_matrix[1][2] 0.011783 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023565 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009653 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD A 1 1001 1001 CD CD . D 2 CD A 1 1002 1002 CD CD . E 3 CL A 1 501 501 CL CL . F 4 BMC A 1 1 1 BMC BMC . G 5 SO4 A 1 213 213 SO4 SO4 . H 5 SO4 A 1 2 2 SO4 SO4 . I 5 SO4 A 1 4 4 SO4 SO4 . J 2 CD B 1 1003 1003 CD CD . K 2 CD B 1 1004 1004 CD CD . L 3 CL B 1 502 502 CL CL . M 4 BMC B 1 1 1 BMC BMC . N 5 SO4 B 1 3 3 SO4 SO4 . O 5 SO4 B 1 5 5 SO4 SO4 . P 5 SO4 B 1 6 6 SO4 SO4 . Q 6 HOH A 1 3 3 HOH HOH . Q 6 HOH A 2 5 5 HOH HOH . Q 6 HOH A 3 6 6 HOH HOH . Q 6 HOH A 4 9 9 HOH HOH . Q 6 HOH A 5 13 13 HOH HOH . Q 6 HOH A 6 15 15 HOH HOH . Q 6 HOH A 7 16 16 HOH HOH . Q 6 HOH A 8 17 17 HOH HOH . Q 6 HOH A 9 18 18 HOH HOH . Q 6 HOH A 10 19 19 HOH HOH . Q 6 HOH A 11 24 24 HOH HOH . Q 6 HOH A 12 25 25 HOH HOH . Q 6 HOH A 13 27 27 HOH HOH . Q 6 HOH A 14 30 30 HOH HOH . Q 6 HOH A 15 31 31 HOH HOH . Q 6 HOH A 16 32 32 HOH HOH . Q 6 HOH A 17 34 34 HOH HOH . Q 6 HOH A 18 36 36 HOH HOH . Q 6 HOH A 19 38 38 HOH HOH . Q 6 HOH A 20 43 43 HOH HOH . Q 6 HOH A 21 44 44 HOH HOH . Q 6 HOH A 22 46 46 HOH HOH . Q 6 HOH A 23 47 47 HOH HOH . Q 6 HOH A 24 48 48 HOH HOH . Q 6 HOH A 25 49 49 HOH HOH . Q 6 HOH A 26 214 214 HOH HOH . Q 6 HOH A 27 215 215 HOH HOH . Q 6 HOH A 28 216 216 HOH HOH . Q 6 HOH A 29 217 217 HOH HOH . Q 6 HOH A 30 218 218 HOH HOH . Q 6 HOH A 31 219 219 HOH HOH . Q 6 HOH A 32 220 220 HOH HOH . Q 6 HOH A 33 221 221 HOH HOH . Q 6 HOH A 34 222 222 HOH HOH . Q 6 HOH A 35 223 223 HOH HOH . Q 6 HOH A 36 225 225 HOH HOH . Q 6 HOH A 37 226 226 HOH HOH . Q 6 HOH A 38 227 227 HOH HOH . Q 6 HOH A 39 228 228 HOH HOH . Q 6 HOH A 40 229 229 HOH HOH . Q 6 HOH A 41 230 230 HOH HOH . R 6 HOH B 1 7 7 HOH HOH . R 6 HOH B 2 8 8 HOH HOH . R 6 HOH B 3 10 10 HOH HOH . R 6 HOH B 4 11 11 HOH HOH . R 6 HOH B 5 12 12 HOH HOH . R 6 HOH B 6 14 14 HOH HOH . R 6 HOH B 7 20 20 HOH HOH . R 6 HOH B 8 21 21 HOH HOH . R 6 HOH B 9 22 22 HOH HOH . R 6 HOH B 10 23 23 HOH HOH . R 6 HOH B 11 26 26 HOH HOH . R 6 HOH B 12 28 28 HOH HOH . R 6 HOH B 13 29 29 HOH HOH . R 6 HOH B 14 33 33 HOH HOH . R 6 HOH B 15 35 35 HOH HOH . R 6 HOH B 16 37 37 HOH HOH . R 6 HOH B 17 39 39 HOH HOH . R 6 HOH B 18 40 40 HOH HOH . R 6 HOH B 19 41 41 HOH HOH . R 6 HOH B 20 42 42 HOH HOH . R 6 HOH B 21 45 45 HOH HOH . R 6 HOH B 22 213 213 HOH HOH . R 6 HOH B 23 214 214 HOH HOH . R 6 HOH B 24 215 215 HOH HOH . R 6 HOH B 25 216 216 HOH HOH . R 6 HOH B 26 217 217 HOH HOH . R 6 HOH B 27 218 218 HOH HOH . R 6 HOH B 28 219 219 HOH HOH . R 6 HOH B 29 220 220 HOH HOH . R 6 HOH B 30 221 221 HOH HOH . R 6 HOH B 31 222 222 HOH HOH . R 6 HOH B 32 223 223 HOH HOH . R 6 HOH B 33 224 224 HOH HOH . R 6 HOH B 34 225 225 HOH HOH . R 6 HOH B 35 226 226 HOH HOH . R 6 HOH B 36 227 227 HOH HOH . R 6 HOH B 37 228 228 HOH HOH . R 6 HOH B 38 229 229 HOH HOH . R 6 HOH B 39 230 230 HOH HOH . R 6 HOH B 40 231 231 HOH HOH . R 6 HOH B 41 232 232 HOH HOH . R 6 HOH B 42 233 233 HOH HOH . R 6 HOH B 43 234 234 HOH HOH . R 6 HOH B 44 235 235 HOH HOH . R 6 HOH B 45 236 236 HOH HOH . R 6 HOH B 46 237 237 HOH HOH . R 6 HOH B 47 238 238 HOH HOH . R 6 HOH B 48 239 239 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BMC . A . F 4 -1.354 12.551 -5.91 0.4 28.95 ? C1 BMC 1 A 1 HETATM 2 C C1 BMC . B . F 4 -1.179 12.191 -6.795 0.4 30.13 ? C1 BMC 1 A 1 HETATM 3 C C2 BMC . A . F 4 -0.63 11.535 -6.554 0.4 33.16 ? C2 BMC 1 A 1 HETATM 4 C C2 BMC . B . F 4 -1.227 10.867 -6.332 0.4 32.75 ? C2 BMC 1 A 1 HETATM 5 C C3 BMC . A . F 4 -0.652 10.189 -6.135 0.4 30.23 ? C3 BMC 1 A 1 HETATM 6 C C3 BMC . B . F 4 -1.806 10.509 -5.101 0.4 29.65 ? C3 BMC 1 A 1 HETATM 7 C C4 BMC . A . F 4 -1.392 9.773 -5.037 0.4 28.49 ? C4 BMC 1 A 1 HETATM 8 C C4 BMC . B . F 4 -2.344 11.467 -4.243 0.4 28.02 ? C4 BMC 1 A 1 HETATM 9 C C5 BMC . A . F 4 -2.11 10.756 -4.382 0.4 26.32 ? C5 BMC 1 A 1 HETATM 10 C C5 BMC . B . F 4 -2.265 12.784 -4.691 0.4 28.84 ? C5 BMC 1 A 1 HETATM 11 C C6 BMC . A . F 4 -2.088 12.138 -4.803 0.4 28.82 ? C6 BMC 1 A 1 HETATM 12 C C6 BMC . B . F 4 -1.681 13.148 -5.97 0.4 26.78 ? C6 BMC 1 A 1 HETATM 13 O O7 BMC . A . F 4 -2.886 12.834 -3.935 0.4 27.79 ? O7 BMC 1 A 1 HETATM 14 O O7 BMC . B . F 4 -1.747 14.493 -6.118 0.4 27.17 ? O7 BMC 1 A 1 HETATM 15 C C8 BMC . A . F 4 -3.433 11.955 -2.931 0.4 25.25 ? C8 BMC 1 A 1 HETATM 16 C C8 BMC . B . F 4 -2.521 15.035 -5.057 0.4 23.54 ? C8 BMC 1 A 1 HETATM 17 O O9 BMC . A . F 4 -2.913 10.677 -3.292 0.4 27.25 ? O9 BMC 1 A 1 HETATM 18 O O9 BMC . B . F 4 -2.675 13.946 -4.125 0.4 29.3 ? O9 BMC 1 A 1 HETATM 19 C C10 BMC . A . F 4 0.178 11.902 -7.748 0.4 35.03 ? C10 BMC 1 A 1 HETATM 20 C C10 BMC . B . F 4 -0.711 9.848 -7.285 0.4 35.35 ? C10 BMC 1 A 1 HETATM 21 C C11 BMC . A . F 4 -0.282 11.851 -9.066 0.4 37.48 ? C11 BMC 1 A 1 HETATM 22 C C11 BMC . B . F 4 0.224 10.07 -8.303 0.4 36.02 ? C11 BMC 1 A 1 HETATM 23 C C12 BMC . A . F 4 0.749 12.276 -9.889 0.4 38.73 ? C12 BMC 1 A 1 HETATM 24 C C12 BMC . B . F 4 0.371 8.874 -9.001 0.4 37.29 ? C12 BMC 1 A 1 HETATM 25 N N13 BMC . A . F 4 1.762 12.571 -9.075 0.4 37.95 ? N13 BMC 1 A 1 HETATM 26 N N13 BMC . B . F 4 -0.457 8 -8.439 0.4 37.33 ? N13 BMC 1 A 1 HETATM 27 N N14 BMC . A . F 4 1.449 12.366 -7.737 0.4 34.47 ? N14 BMC 1 A 1 HETATM 28 N N14 BMC . B . F 4 -1.157 8.578 -7.374 0.4 36.15 ? N14 BMC 1 A 1 HETATM 29 C C15 BMC . A . F 4 0.735 12.399 -11.373 0.4 40.83 ? C15 BMC 1 A 1 HETATM 30 C C15 BMC . B . F 4 1.258 8.598 -10.159 0.4 38.51 ? C15 BMC 1 A 1 HETATM 31 O O16 BMC . A . F 4 0.707 11.363 -12.079 0.4 39.9 ? O16 BMC 1 A 1 HETATM 32 O O16 BMC . B . F 4 1.234 7.456 -10.677 0.4 40.23 ? O16 BMC 1 A 1 HETATM 33 O O17 BMC . A . F 4 0.732 13.561 -11.858 0.4 42.39 ? O17 BMC 1 A 1 HETATM 34 O O17 BMC . B . F 4 1.989 9.515 -10.594 0.4 39.05 ? O17 BMC 1 A 1 HETATM 35 C C18 BMC . A . F 4 3.123 13.077 -9.328 0.4 37.76 ? C18 BMC 1 A 1 HETATM 36 C C18 BMC . B . F 4 -0.774 6.573 -8.724 0.4 36.59 ? C18 BMC 1 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #