data_3AO5 # _model_server_result.job_id IOYxpnLmqnHx5cgUO3lDFQ _model_server_result.datetime_utc '2024-11-22 14:26:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ao5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1003}' # _entry.id 3AO5 # _exptl.entry_id 3AO5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3AO5 _cell.length_a 49.032 _cell.length_b 49.032 _cell.length_c 103.724 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3AO5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 K N N ? 6 P N N ? 6 Q N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 C 1 GLC D 1 SUC 2 n C FRU 2 C 2 FRU D 1 SUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C1 GLC . C GLC 1 1_555 C O2 FRU . C FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 sing metalc ? metalc1 R O HOH . A HOH 12 1_555 K CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc2 R O HOH . A HOH 38 1_555 K CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc3 A SG CYS 16 A CYS 65 1_555 J CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc4 A SG CYS 16 A CYS 65 1_555 K CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc5 A NE2 HIS 18 A HIS 67 1_555 J CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc6 A OE1 GLU 43 A GLU 92 1_555 J CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc7 A OE2 GLU 43 A GLU 92 1_555 K CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc8 A OD2 ASP 67 A ASP 116 1_555 K CD CD . A CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc9 S O HOH . B HOH 17 1_555 Q CD CD . B CD 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc10 S O HOH . B HOH 23 1_555 Q CD CD . B CD 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc11 B SG CYS 16 B CYS 65 1_555 P CD CD . B CD 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc12 B SG CYS 16 B CYS 65 1_555 Q CD CD . B CD 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc13 B NE2 HIS 18 B HIS 67 1_555 P CD CD . B CD 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc14 B OE1 GLU 43 B GLU 92 1_555 P CD CD . B CD 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc15 B OE2 GLU 43 B GLU 92 1_555 Q CD CD . B CD 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc16 B OD2 ASP 67 B ASP 116 1_555 Q CD CD . B CD 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3AO5 _atom_sites.fract_transf_matrix[1][1] 0.020395 _atom_sites.fract_transf_matrix[1][2] 0.011775 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009641 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 BBY A 1 213 1 BBY AAA . E 4 CL A 1 501 501 CL CL . F 5 SO4 A 1 750 750 SO4 SO4 . G 5 SO4 A 1 752 752 SO4 SO4 . H 5 SO4 A 1 754 754 SO4 SO4 . I 5 SO4 A 1 755 755 SO4 SO4 . J 6 CD A 1 1001 1001 CD CD . K 6 CD A 1 1002 1002 CD CD . L 3 BBY B 1 1 1 BBY AAA . M 4 CL B 1 502 502 CL CL . N 5 SO4 B 1 751 751 SO4 SO4 . O 5 SO4 B 1 756 756 SO4 SO4 . P 6 CD B 1 1003 1003 CD CD . Q 6 CD B 1 1004 1004 CD CD . R 7 HOH A 1 4 4 HOH HOH . R 7 HOH A 2 7 7 HOH HOH . R 7 HOH A 3 8 8 HOH HOH . R 7 HOH A 4 10 10 HOH HOH . R 7 HOH A 5 12 12 HOH HOH . R 7 HOH A 6 13 13 HOH HOH . R 7 HOH A 7 15 15 HOH HOH . R 7 HOH A 8 19 19 HOH HOH . R 7 HOH A 9 21 21 HOH HOH . R 7 HOH A 10 24 24 HOH HOH . R 7 HOH A 11 25 25 HOH HOH . R 7 HOH A 12 26 26 HOH HOH . R 7 HOH A 13 27 27 HOH HOH . R 7 HOH A 14 29 29 HOH HOH . R 7 HOH A 15 33 33 HOH HOH . R 7 HOH A 16 34 34 HOH HOH . R 7 HOH A 17 37 37 HOH HOH . R 7 HOH A 18 38 38 HOH HOH . R 7 HOH A 19 40 40 HOH HOH . R 7 HOH A 20 43 43 HOH HOH . R 7 HOH A 21 45 45 HOH HOH . R 7 HOH A 22 214 53 HOH HOH . R 7 HOH A 23 215 56 HOH HOH . R 7 HOH A 24 216 57 HOH HOH . R 7 HOH A 25 217 58 HOH HOH . R 7 HOH A 26 218 59 HOH HOH . S 7 HOH B 1 2 2 HOH HOH . S 7 HOH B 2 3 3 HOH HOH . S 7 HOH B 3 5 5 HOH HOH . S 7 HOH B 4 6 6 HOH HOH . S 7 HOH B 5 9 9 HOH HOH . S 7 HOH B 6 11 11 HOH HOH . S 7 HOH B 7 14 14 HOH HOH . S 7 HOH B 8 16 16 HOH HOH . S 7 HOH B 9 17 17 HOH HOH . S 7 HOH B 10 18 18 HOH HOH . S 7 HOH B 11 20 20 HOH HOH . S 7 HOH B 12 22 22 HOH HOH . S 7 HOH B 13 23 23 HOH HOH . S 7 HOH B 14 28 28 HOH HOH . S 7 HOH B 15 30 30 HOH HOH . S 7 HOH B 16 31 31 HOH HOH . S 7 HOH B 17 32 32 HOH HOH . S 7 HOH B 18 35 35 HOH HOH . S 7 HOH B 19 36 36 HOH HOH . S 7 HOH B 20 39 39 HOH HOH . S 7 HOH B 21 41 41 HOH HOH . S 7 HOH B 22 42 42 HOH HOH . S 7 HOH B 23 44 44 HOH HOH . S 7 HOH B 24 46 46 HOH HOH . S 7 HOH B 25 47 47 HOH HOH . S 7 HOH B 26 48 48 HOH HOH . S 7 HOH B 27 49 49 HOH HOH . S 7 HOH B 28 213 1 HOH HOH . S 7 HOH B 29 214 50 HOH HOH . S 7 HOH B 30 215 51 HOH HOH . S 7 HOH B 31 216 52 HOH HOH . S 7 HOH B 32 217 54 HOH HOH . S 7 HOH B 33 218 55 HOH HOH . S 7 HOH B 34 219 60 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id P _atom_site.label_entity_id 6 _atom_site.Cartn_x -7.052 _atom_site.Cartn_y -28.288 _atom_site.Cartn_z -11.27 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 1003 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #